From 67ba4fde57d0bd6763c46cc3aaf09af5c51405e3 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Wed, 20 May 2020 13:53:08 +0200 Subject: [PATCH] added test for prepare projects step --- .../project/PrepareProjectTest.java | 94 ++++++++++++++++++ .../preparedProgramme_whole.json.gz | Bin .../prepared_projects.json} | 0 .../project/projects_subset.json | 0 .../{ => project}/whole_programme.json.gz | Bin 5 files changed, 94 insertions(+) create mode 100644 dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/PrepareProjectTest.java rename dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/{ => project}/preparedProgramme_whole.json.gz (100%) rename dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/{projects_subset.json => project/prepared_projects.json} (100%) create mode 100644 dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/projects_subset.json rename dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/{ => project}/whole_programme.json.gz (100%) diff --git a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/PrepareProjectTest.java b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/PrepareProjectTest.java new file mode 100644 index 0000000000..fa9e32fd57 --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/PrepareProjectTest.java @@ -0,0 +1,94 @@ + +package eu.dnetlib.dhp.actionmanager.project; + +import com.fasterxml.jackson.databind.ObjectMapper; +import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme; +import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProject; +import org.apache.commons.io.FileUtils; +import org.apache.spark.SparkConf; +import org.apache.spark.api.java.JavaRDD; +import org.apache.spark.api.java.JavaSparkContext; +import org.apache.spark.sql.Dataset; +import org.apache.spark.sql.Encoders; +import org.apache.spark.sql.SparkSession; +import org.junit.jupiter.api.AfterAll; +import org.junit.jupiter.api.Assertions; +import org.junit.jupiter.api.BeforeAll; +import org.junit.jupiter.api.Test; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Path; + +public class PrepareProjectTest { + + private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); + + private static final ClassLoader cl = PrepareProjectTest.class + .getClassLoader(); + + private static SparkSession spark; + + private static Path workingDir; + private static final Logger log = LoggerFactory + .getLogger(PrepareProjectTest.class); + + @BeforeAll + public static void beforeAll() throws IOException { + workingDir = Files + .createTempDirectory(PrepareProjectTest.class.getSimpleName()); + log.info("using work dir {}", workingDir); + + SparkConf conf = new SparkConf(); + conf.setAppName(PrepareProjectTest.class.getSimpleName()); + + conf.setMaster("local[*]"); + conf.set("spark.driver.host", "localhost"); + conf.set("hive.metastore.local", "true"); + conf.set("spark.ui.enabled", "false"); + conf.set("spark.sql.warehouse.dir", workingDir.toString()); + conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); + + spark = SparkSession + .builder() + .appName(PrepareProjectTest.class.getSimpleName()) + .config(conf) + .getOrCreate(); + } + + @AfterAll + public static void afterAll() throws IOException { + FileUtils.deleteDirectory(workingDir.toFile()); + spark.stop(); + } + + @Test + public void numberDistinctProgrammeTest() throws Exception { + PrepareProjects + .main( + new String[] { + "-isSparkSessionManaged", + Boolean.FALSE.toString(), + "-projectPath", + getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/projects_subset.json").getPath(), + "-outputPath", + workingDir.toString() + "/preparedProjects" + }); + + final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext()); + + JavaRDD tmp = sc + .textFile(workingDir.toString() + "/preparedProjects") + .map(item -> OBJECT_MAPPER.readValue(item, CSVProject.class)); + + Assertions.assertEquals(20, tmp.count()); + + Dataset verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(CSVProject.class)); + + Assertions.assertEquals(0, verificationDataset.filter("length(id) = 0").count()); + Assertions.assertEquals(0, verificationDataset.filter("length(programme) = 0").count()); + } + +} diff --git a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/preparedProgramme_whole.json.gz b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/preparedProgramme_whole.json.gz similarity index 100% rename from dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/preparedProgramme_whole.json.gz rename to dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/preparedProgramme_whole.json.gz diff --git a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/projects_subset.json b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/prepared_projects.json similarity index 100% rename from dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/projects_subset.json rename to dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/prepared_projects.json diff --git a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/projects_subset.json b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/projects_subset.json new file mode 100644 index 0000000000..e69de29bb2 diff --git a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/whole_programme.json.gz b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/whole_programme.json.gz similarity index 100% rename from dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/whole_programme.json.gz rename to dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/project/whole_programme.json.gz