diff --git a/dhp-workflows/dhp-dedup-openaire/pom.xml b/dhp-workflows/dhp-dedup-openaire/pom.xml index 03ddbcf4c..ff11c66e0 100644 --- a/dhp-workflows/dhp-dedup-openaire/pom.xml +++ b/dhp-workflows/dhp-dedup-openaire/pom.xml @@ -90,6 +90,10 @@ com.fasterxml.jackson.core jackson-core + + org.apache.httpcomponents + httpclient + diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AbstractSparkAction.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AbstractSparkAction.java index 74cecb7b6..9a1127764 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AbstractSparkAction.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AbstractSparkAction.java @@ -29,6 +29,7 @@ import eu.dnetlib.pace.config.DedupConfig; abstract class AbstractSparkAction implements Serializable { protected static final int NUM_PARTITIONS = 1000; + protected static final int NUM_CONNECTIONS = 20; protected static final ObjectMapper OBJECT_MAPPER = new ObjectMapper() .configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false); diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DatePicker.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DatePicker.java index 70fb2cc5b..c2fe09a4d 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DatePicker.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DatePicker.java @@ -18,7 +18,7 @@ import eu.dnetlib.dhp.schema.oaf.Field; public class DatePicker { - private static final String DATE_PATTERN = "\\d{4}-\\d{2}-\\d{2}"; + public static final String DATE_PATTERN = "\\d{4}-\\d{2}-\\d{2}"; private static final String DATE_DEFAULT_SUFFIX = "01-01"; private static final int YEAR_LB = 1300; private static final int YEAR_UB = Year.now().getValue() + 5; @@ -114,7 +114,7 @@ public class DatePicker { } } - private static boolean inRange(final String date) { + public static boolean inRange(final String date) { final int year = Integer.parseInt(substringBefore(date, "-")); return year >= YEAR_LB && year <= YEAR_UB; } diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java index f7e2e9ae0..025745f12 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java @@ -17,6 +17,7 @@ import com.fasterxml.jackson.databind.DeserializationFeature; import com.fasterxml.jackson.databind.ObjectMapper; import com.google.common.collect.Lists; +import eu.dnetlib.dhp.oa.dedup.model.Identifier; import eu.dnetlib.dhp.oa.merge.AuthorMerger; import eu.dnetlib.dhp.schema.common.ModelSupport; import eu.dnetlib.dhp.schema.oaf.*; @@ -81,11 +82,16 @@ public class DedupRecordFactory { final Collection dates = Lists.newArrayList(); final List> authors = Lists.newArrayList(); + final List bestPids = Lists.newArrayList(); // best pids list entities .forEachRemaining( t -> { T duplicate = t._2(); + + // prepare the list of pids to use for the id generation + bestPids.addAll(IdGenerator.bestPidToIdentifier(duplicate)); + entity.mergeFrom(duplicate); if (ModelSupport.isSubClass(duplicate, Result.class)) { Result r1 = (Result) duplicate; @@ -94,6 +100,7 @@ public class DedupRecordFactory { if (r1.getDateofacceptance() != null) dates.add(r1.getDateofacceptance().getValue()); } + }); // set authors and date @@ -102,10 +109,12 @@ public class DedupRecordFactory { ((Result) entity).setAuthor(AuthorMerger.merge(authors)); } - entity.setId(id); + entity.setId(IdGenerator.generate(bestPids, id)); + entity.setLastupdatetimestamp(ts); entity.setDataInfo(dataInfo); return entity; } + } diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupUtility.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupUtility.java index 01065510a..a44d51af3 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupUtility.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupUtility.java @@ -70,17 +70,6 @@ public class DedupUtility { return Sets.newHashSet(BlacklistAwareClusteringCombiner.filterAndCombine(doc, conf)); } - public static String md5(final String s) { - try { - final MessageDigest md = MessageDigest.getInstance("MD5"); - md.update(s.getBytes(StandardCharsets.UTF_8)); - return new String(Hex.encodeHex(md.digest())); - } catch (final Exception e) { - System.err.println("Error creating id"); - return null; - } - } - public static String createDedupRecordPath( final String basePath, final String actionSetId, final String entityType) { return String.format("%s/%s/%s_deduprecord", basePath, actionSetId, entityType); diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/IdGenerator.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/IdGenerator.java new file mode 100644 index 000000000..405a9abf1 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/IdGenerator.java @@ -0,0 +1,124 @@ + +package eu.dnetlib.dhp.oa.dedup; + +import java.io.Serializable; +import java.text.ParseException; +import java.text.SimpleDateFormat; +import java.util.*; + +import org.apache.commons.lang.StringUtils; + +import com.google.common.collect.Lists; + +import eu.dnetlib.dhp.oa.dedup.model.Identifier; +import eu.dnetlib.dhp.oa.dedup.model.PidType; +import eu.dnetlib.dhp.schema.common.EntityType; +import eu.dnetlib.dhp.schema.common.ModelSupport; +import eu.dnetlib.dhp.schema.oaf.Field; +import eu.dnetlib.dhp.schema.oaf.OafEntity; +import eu.dnetlib.dhp.schema.oaf.Result; +import eu.dnetlib.dhp.schema.oaf.StructuredProperty; +import eu.dnetlib.dhp.utils.DHPUtils; + +public class IdGenerator implements Serializable { + + public static String CROSSREF_ID = "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2"; + public static String DATACITE_ID = "10|openaire____::9e3be59865b2c1c335d32dae2fe7b254"; + public static String BASE_DATE = "2000-01-01"; + + // pick the best pid from the list (consider date and pidtype) + public static String generate(List pids, String defaultID) { + if (pids == null || pids.size() == 0) + return defaultID; + + Optional bp = pids + .stream() + .max(Identifier::compareTo); + + if (bp.get().isUseOriginal() || bp.get().getPid().getValue() == null) { + return bp.get().getOriginalID().split("\\|")[0] + "|dedup_wf_001::" + + DHPUtils.md5(bp.get().getOriginalID()); + } else { + return bp.get().getOriginalID().split("\\|")[0] + "|" + + createPrefix(bp.get().getPid().getQualifier().getClassid()) + "::" + + DHPUtils.md5(bp.get().getPid().getValue()); + } + + } + + public static ArrayList createBasePid(T entity, SimpleDateFormat sdf) { + + Date date; + try { + date = sdf.parse(BASE_DATE); + } catch (ParseException e) { + date = new Date(); + } + return Lists + .newArrayList( + new Identifier(new StructuredProperty(), date, PidType.original, entity.getCollectedfrom(), + EntityType.fromClass(entity.getClass()), entity.getId())); + } + + // pick the best pid from the entity. Returns a list (length 1) to save time in the call + public static List bestPidToIdentifier(T entity) { + + SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd"); + + if (entity.getPid() == null || entity.getPid().size() == 0) + return createBasePid(entity, sdf); + + Optional bp = entity + .getPid() + .stream() + .filter(pid -> PidType.classidValueOf(pid.getQualifier().getClassid()) != PidType.undefined) + .max(Comparator.comparing(pid -> PidType.classidValueOf(pid.getQualifier().getClassid()))); + + return bp + .map( + structuredProperty -> Lists + .newArrayList( + new Identifier(structuredProperty, extractDate(entity, sdf), + PidType.classidValueOf(structuredProperty.getQualifier().getClassid()), + entity.getCollectedfrom(), EntityType.fromClass(entity.getClass()), entity.getId()))) + .orElseGet(() -> createBasePid(entity, sdf)); + + } + + // create the prefix (length = 12): dedup_+ pidType + public static String createPrefix(String pidType) { + + StringBuilder prefix = new StringBuilder("dedup_" + pidType); + + while (prefix.length() < 12) { + prefix.append("_"); + } + return prefix.toString().substring(0, 12); + + } + + // extracts the date from the record. If the date is not available or is not wellformed, it returns a base date: + // 00-01-01 + public static Date extractDate(T duplicate, SimpleDateFormat sdf) { + + String date = BASE_DATE; + if (ModelSupport.isSubClass(duplicate, Result.class)) { + Result result = (Result) duplicate; + if (isWellformed(result.getDateofacceptance())) { + date = result.getDateofacceptance().getValue(); + } + } + + try { + return sdf.parse(date); + } catch (ParseException e) { + return new Date(); + } + + } + + public static boolean isWellformed(Field date) { + return date != null && StringUtils.isNotBlank(date.getValue()) + && date.getValue().matches(DatePicker.DATE_PATTERN) && DatePicker.inRange(date.getValue()); + } +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCollectSimRels.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCollectSimRels.java new file mode 100644 index 000000000..f9e6448b0 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCollectSimRels.java @@ -0,0 +1,184 @@ + +package eu.dnetlib.dhp.oa.dedup; + +import java.io.IOException; +import java.util.ArrayList; +import java.util.List; +import java.util.Optional; +import java.util.stream.Collectors; +import java.util.stream.StreamSupport; + +import org.apache.commons.io.IOUtils; +import org.apache.spark.SparkConf; +import org.apache.spark.api.java.JavaPairRDD; +import org.apache.spark.api.java.JavaRDD; +import org.apache.spark.sql.*; +import org.dom4j.DocumentException; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import eu.dnetlib.dhp.application.ArgumentApplicationParser; +import eu.dnetlib.dhp.schema.oaf.DataInfo; +import eu.dnetlib.dhp.schema.oaf.Relation; +import eu.dnetlib.dhp.utils.ISLookupClientFactory; +import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; +import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; +import eu.dnetlib.pace.config.DedupConfig; +import scala.Tuple2; + +public class SparkCollectSimRels extends AbstractSparkAction { + + private static final Logger log = LoggerFactory.getLogger(SparkCollectSimRels.class); + + Dataset simGroupsDS; + Dataset groupsDS; + + public SparkCollectSimRels(ArgumentApplicationParser parser, SparkSession spark, Dataset simGroupsDS, + Dataset groupsDS) { + super(parser, spark); + this.simGroupsDS = simGroupsDS; + this.groupsDS = groupsDS; + } + + public static void main(String[] args) throws Exception { + ArgumentApplicationParser parser = new ArgumentApplicationParser( + IOUtils + .toString( + SparkBlockStats.class + .getResourceAsStream( + "/eu/dnetlib/dhp/oa/dedup/collectSimRels_parameters.json"))); + parser.parseArgument(args); + + SparkConf conf = new SparkConf(); + + final String dbUrl = parser.get("postgresUrl"); + final String dbUser = parser.get("postgresUser"); + final String dbPassword = parser.get("postgresPassword"); + + SparkSession spark = getSparkSession(conf); + + DataFrameReader readOptions = spark + .read() + .format("jdbc") + .option("url", dbUrl) + .option("user", dbUser) + .option("password", dbPassword); + + new SparkCollectSimRels( + parser, + spark, + readOptions.option("dbtable", "similarity_groups").load(), + readOptions.option("dbtable", "groups").load()) + .run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl"))); + } + + @Override + void run(ISLookUpService isLookUpService) throws DocumentException, ISLookUpException, IOException { + + // read oozie parameters + final String isLookUpUrl = parser.get("isLookUpUrl"); + final String actionSetId = parser.get("actionSetId"); + final String workingPath = parser.get("workingPath"); + final int numPartitions = Optional + .ofNullable(parser.get("numPartitions")) + .map(Integer::valueOf) + .orElse(NUM_PARTITIONS); + final String dbUrl = parser.get("postgresUrl"); + final String dbUser = parser.get("postgresUser"); + + log.info("numPartitions: '{}'", numPartitions); + log.info("isLookUpUrl: '{}'", isLookUpUrl); + log.info("actionSetId: '{}'", actionSetId); + log.info("workingPath: '{}'", workingPath); + log.info("postgresUser: {}", dbUser); + log.info("postgresUrl: {}", dbUrl); + log.info("postgresPassword: xxx"); + + JavaPairRDD> similarityGroup = simGroupsDS + .toJavaRDD() + .mapToPair(r -> new Tuple2<>(r.getString(0), r.getString(1))) + .groupByKey() + .mapToPair( + i -> new Tuple2<>(i._1(), StreamSupport + .stream(i._2().spliterator(), false) + .collect(Collectors.toList()))); + + JavaPairRDD groupIds = groupsDS + .toJavaRDD() + .mapToPair(r -> new Tuple2<>(r.getString(0), r.getString(1))); + + JavaRDD, List>> groups = similarityGroup + .leftOuterJoin(groupIds) + .filter(g -> g._2()._2().isPresent()) + .map(g -> new Tuple2<>(new Tuple2<>(g._1(), g._2()._2().get()), g._2()._1())); + + JavaRDD relations = groups.flatMap(g -> { + String firstId = g._2().get(0); + List rels = new ArrayList<>(); + + for (String id : g._2()) { + if (!firstId.equals(id)) + rels.add(createSimRel(firstId, id, g._1()._2())); + } + + return rels.iterator(); + }); + + Dataset resultRelations = spark + .createDataset( + relations.filter(r -> r.getRelType().equals("resultResult")).rdd(), + Encoders.bean(Relation.class)) + .repartition(numPartitions); + + Dataset organizationRelations = spark + .createDataset( + relations.filter(r -> r.getRelType().equals("organizationOrganization")).rdd(), + Encoders.bean(Relation.class)) + .repartition(numPartitions); + + for (DedupConfig dedupConf : getConfigurations(isLookUpService, actionSetId)) { + switch (dedupConf.getWf().getSubEntityValue()) { + case "organization": + savePostgresRelation(organizationRelations, workingPath, actionSetId, "organization"); + break; + default: + savePostgresRelation( + resultRelations, workingPath, actionSetId, dedupConf.getWf().getSubEntityValue()); + break; + } + } + + } + + private Relation createSimRel(String source, String target, String entity) { + final Relation r = new Relation(); + r.setSubRelType("dedupSimilarity"); + r.setRelClass("isSimilarTo"); + r.setDataInfo(new DataInfo()); + + switch (entity) { + case "result": + r.setSource("50|" + source); + r.setTarget("50|" + target); + r.setRelType("resultResult"); + break; + case "organization": + r.setSource("20|" + source); + r.setTarget("20|" + target); + r.setRelType("organizationOrganization"); + break; + default: + throw new IllegalArgumentException("unmanaged entity type: " + entity); + } + return r; + } + + private void savePostgresRelation(Dataset newRelations, String workingPath, String actionSetId, + String entityType) { + newRelations + .write() + .mode(SaveMode.Append) + .parquet(DedupUtility.createSimRelPath(workingPath, actionSetId, entityType)); + } + +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java index 6d625cd11..1122b42eb 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java @@ -106,10 +106,8 @@ public class SparkCreateMergeRels extends AbstractSparkAction { final RDD> edgeRdd = spark .read() - .textFile(DedupUtility.createSimRelPath(workingPath, actionSetId, subEntity)) - .map( - (MapFunction) r -> OBJECT_MAPPER.readValue(r, Relation.class), - Encoders.bean(Relation.class)) + .load(DedupUtility.createSimRelPath(workingPath, actionSetId, subEntity)) + .as(Encoders.bean(Relation.class)) .javaRDD() .map(it -> new Edge<>(hash(it.getSource()), hash(it.getTarget()), it.getRelClass())) .rdd(); diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateSimRels.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateSimRels.java index b3ee47bfc..d5033d425 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateSimRels.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateSimRels.java @@ -100,12 +100,17 @@ public class SparkCreateSimRels extends AbstractSparkAction { .repartition(numPartitions); // create relations by comparing only elements in the same group - Deduper - .computeRelations(sc, blocks, dedupConf) - .map(t -> createSimRel(t._1(), t._2(), entity)) - .repartition(numPartitions) - .map(r -> OBJECT_MAPPER.writeValueAsString(r)) - .saveAsTextFile(outputPath); + spark + .createDataset( + Deduper + .computeRelations(sc, blocks, dedupConf) + .map(t -> createSimRel(t._1(), t._2(), entity)) + .repartition(numPartitions) + .rdd(), + Encoders.bean(Relation.class)) + .write() + .mode(SaveMode.Append) + .parquet(outputPath); } } diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPrepareNewOrgs.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPrepareNewOrgs.java new file mode 100644 index 000000000..9b91a545e --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPrepareNewOrgs.java @@ -0,0 +1,170 @@ + +package eu.dnetlib.dhp.oa.dedup; + +import java.io.IOException; +import java.util.Optional; +import java.util.Properties; + +import org.apache.commons.io.IOUtils; +import org.apache.http.client.methods.CloseableHttpResponse; +import org.apache.http.client.methods.HttpGet; +import org.apache.http.impl.client.CloseableHttpClient; +import org.apache.http.impl.client.HttpClients; +import org.apache.spark.SparkConf; +import org.apache.spark.api.java.function.FilterFunction; +import org.apache.spark.api.java.function.MapFunction; +import org.apache.spark.sql.Dataset; +import org.apache.spark.sql.Encoders; +import org.apache.spark.sql.SaveMode; +import org.apache.spark.sql.SparkSession; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import eu.dnetlib.dhp.application.ArgumentApplicationParser; +import eu.dnetlib.dhp.oa.dedup.model.OrgSimRel; +import eu.dnetlib.dhp.schema.common.ModelSupport; +import eu.dnetlib.dhp.schema.oaf.Organization; +import eu.dnetlib.dhp.schema.oaf.Relation; +import eu.dnetlib.dhp.utils.ISLookupClientFactory; +import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; +import scala.Tuple2; + +public class SparkPrepareNewOrgs extends AbstractSparkAction { + + private static final Logger log = LoggerFactory.getLogger(SparkCreateDedupRecord.class); + + public SparkPrepareNewOrgs(ArgumentApplicationParser parser, SparkSession spark) { + super(parser, spark); + } + + public static void main(String[] args) throws Exception { + ArgumentApplicationParser parser = new ArgumentApplicationParser( + IOUtils + .toString( + SparkPrepareNewOrgs.class + .getResourceAsStream( + "/eu/dnetlib/dhp/oa/dedup/prepareNewOrgs_parameters.json"))); + parser.parseArgument(args); + + SparkConf conf = new SparkConf(); + conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer"); + conf.registerKryoClasses(ModelSupport.getOafModelClasses()); + + new SparkPrepareNewOrgs(parser, getSparkSession(conf)) + .run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl"))); + } + + @Override + public void run(ISLookUpService isLookUpService) throws IOException { + + final String graphBasePath = parser.get("graphBasePath"); + final String isLookUpUrl = parser.get("isLookUpUrl"); + final String actionSetId = parser.get("actionSetId"); + final String workingPath = parser.get("workingPath"); + final int numConnections = Optional + .ofNullable(parser.get("numConnections")) + .map(Integer::valueOf) + .orElse(NUM_CONNECTIONS); + + final String apiUrl = Optional + .ofNullable(parser.get("apiUrl")) + .orElse(""); + + final String dbUrl = parser.get("dbUrl"); + final String dbTable = parser.get("dbTable"); + final String dbUser = parser.get("dbUser"); + final String dbPwd = parser.get("dbPwd"); + + log.info("graphBasePath: '{}'", graphBasePath); + log.info("isLookUpUrl: '{}'", isLookUpUrl); + log.info("actionSetId: '{}'", actionSetId); + log.info("workingPath: '{}'", workingPath); + log.info("numPartitions: '{}'", numConnections); + log.info("apiUrl: '{}'", apiUrl); + log.info("dbUrl: '{}'", dbUrl); + log.info("dbUser: '{}'", dbUser); + log.info("table: '{}'", dbTable); + log.info("dbPwd: '{}'", "xxx"); + + final String mergeRelPath = DedupUtility.createMergeRelPath(workingPath, actionSetId, "organization"); + final String entityPath = DedupUtility.createEntityPath(graphBasePath, "organization"); + + Dataset newOrgs = createNewOrgs(spark, mergeRelPath, entityPath); + + final Properties connectionProperties = new Properties(); + connectionProperties.put("user", dbUser); + connectionProperties.put("password", dbPwd); + + newOrgs + .repartition(numConnections) + .write() + .mode(SaveMode.Append) + .jdbc(dbUrl, dbTable, connectionProperties); + + if (!apiUrl.isEmpty()) + updateSimRels(apiUrl); + + } + + public static Dataset createNewOrgs( + final SparkSession spark, + final String mergeRelsPath, + final String entitiesPath) { + + // + Dataset> entities = spark + .read() + .textFile(entitiesPath) + .map( + (MapFunction>) it -> { + Organization entity = OBJECT_MAPPER.readValue(it, Organization.class); + return new Tuple2<>(entity.getId(), entity); + }, + Encoders.tuple(Encoders.STRING(), Encoders.kryo(Organization.class))); + + Dataset> mergerels = spark + .createDataset( + spark + .read() + .load(mergeRelsPath) + .as(Encoders.bean(Relation.class)) + .where("relClass == 'isMergedIn'") + .toJavaRDD() + .mapToPair(r -> new Tuple2<>(r.getSource(), r.getTarget())) + .rdd(), + Encoders.tuple(Encoders.STRING(), Encoders.STRING())); + + return entities + .joinWith(mergerels, entities.col("_1").equalTo(mergerels.col("_1")), "left") + .filter((FilterFunction, Tuple2>>) t -> t._2() == null) + .filter( + (FilterFunction, Tuple2>>) t -> !t + ._1() + ._1() + .contains("openorgs")) + .map( + (MapFunction, Tuple2>, OrgSimRel>) r -> new OrgSimRel( + "", + r._1()._2().getOriginalId().get(0), + r._1()._2().getLegalname() != null ? r._1()._2().getLegalname().getValue() : "", + r._1()._2().getLegalshortname() != null ? r._1()._2().getLegalshortname().getValue() : "", + r._1()._2().getCountry() != null ? r._1()._2().getCountry().getClassid() : "", + r._1()._2().getWebsiteurl() != null ? r._1()._2().getWebsiteurl().getValue() : "", + r._1()._2().getCollectedfrom().get(0).getValue(), ""), + Encoders.bean(OrgSimRel.class)); + + } + + private static String updateSimRels(final String apiUrl) throws IOException { + + log.info("Updating simrels on the portal"); + + final HttpGet req = new HttpGet(apiUrl); + try (final CloseableHttpClient client = HttpClients.createDefault()) { + try (final CloseableHttpResponse response = client.execute(req)) { + return IOUtils.toString(response.getEntity().getContent()); + } + } + } + +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPrepareOrgRels.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPrepareOrgRels.java new file mode 100644 index 000000000..e9933c4e5 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPrepareOrgRels.java @@ -0,0 +1,263 @@ +package eu.dnetlib.dhp.oa.dedup; + +import com.google.common.collect.Lists; +import eu.dnetlib.dhp.application.ArgumentApplicationParser; +import eu.dnetlib.dhp.oa.dedup.model.OrgSimRel; +import eu.dnetlib.dhp.schema.common.ModelSupport; +import eu.dnetlib.dhp.schema.oaf.Organization; +import eu.dnetlib.dhp.schema.oaf.Relation; +import eu.dnetlib.dhp.utils.ISLookupClientFactory; +import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; +import org.apache.commons.io.IOUtils; +import org.apache.spark.SparkConf; +import org.apache.spark.api.java.function.MapFunction; +import org.apache.spark.sql.Dataset; +import org.apache.spark.sql.Encoders; +import org.apache.spark.sql.SaveMode; +import org.apache.spark.sql.SparkSession; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import scala.Tuple2; +import scala.Tuple3; + +import java.io.IOException; +import java.util.*; + +public class SparkPrepareOrgRels extends AbstractSparkAction { + + private static final Logger log = LoggerFactory.getLogger(SparkCreateDedupRecord.class); + + public SparkPrepareOrgRels(ArgumentApplicationParser parser, SparkSession spark) { + super(parser, spark); + } + + public static void main(String[] args) throws Exception { + ArgumentApplicationParser parser = new ArgumentApplicationParser( + IOUtils + .toString( + SparkCreateSimRels.class + .getResourceAsStream( + "/eu/dnetlib/dhp/oa/dedup/prepareOrgRels_parameters.json"))); + parser.parseArgument(args); + + SparkConf conf = new SparkConf(); + conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer"); + conf.registerKryoClasses(ModelSupport.getOafModelClasses()); + + new SparkPrepareOrgRels(parser, getSparkSession(conf)) + .run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl"))); + } + + @Override + public void run(ISLookUpService isLookUpService) throws IOException { + + final String graphBasePath = parser.get("graphBasePath"); + final String isLookUpUrl = parser.get("isLookUpUrl"); + final String actionSetId = parser.get("actionSetId"); + final String workingPath = parser.get("workingPath"); + final int numConnections = Optional + .ofNullable(parser.get("numConnections")) + .map(Integer::valueOf) + .orElse(NUM_CONNECTIONS); + + final String dbUrl = parser.get("dbUrl"); + final String dbTable = parser.get("dbTable"); + final String dbUser = parser.get("dbUser"); + final String dbPwd = parser.get("dbPwd"); + + log.info("graphBasePath: '{}'", graphBasePath); + log.info("isLookUpUrl: '{}'", isLookUpUrl); + log.info("actionSetId: '{}'", actionSetId); + log.info("workingPath: '{}'", workingPath); + log.info("numPartitions: '{}'", numConnections); + log.info("dbUrl: '{}'", dbUrl); + log.info("dbUser: '{}'", dbUser); + log.info("table: '{}'", dbTable); + log.info("dbPwd: '{}'", "xxx"); + + final String mergeRelPath = DedupUtility.createMergeRelPath(workingPath, actionSetId, "organization"); + final String entityPath = DedupUtility.createEntityPath(graphBasePath, "organization"); + + Dataset relations = createRelations(spark, mergeRelPath, entityPath); + + final Properties connectionProperties = new Properties(); + connectionProperties.put("user", dbUser); + connectionProperties.put("password", dbPwd); + + relations + .repartition(numConnections) + .write() + .mode(SaveMode.Overwrite) + .jdbc(dbUrl, dbTable, connectionProperties); + + } + + public static Dataset createRelations( + final SparkSession spark, + final String mergeRelsPath, + final String entitiesPath) { + + Dataset> entities = spark + .read() + .textFile(entitiesPath) + .map( + (MapFunction>) it -> { + Organization entity = OBJECT_MAPPER.readValue(it, Organization.class); + return new Tuple2<>(entity.getId(), entity); + }, + Encoders.tuple(Encoders.STRING(), Encoders.kryo(Organization.class))); + + Dataset> relations = spark + .createDataset( + spark + .read() + .load(mergeRelsPath) + .as(Encoders.bean(Relation.class)) + .where("relClass == 'merges'") + .toJavaRDD() + .mapToPair(r -> new Tuple2<>(r.getSource(), r.getTarget())) + .filter(t -> !t._2().contains("openorgsmesh")) + .groupByKey() + .map(g -> Lists.newArrayList(g._2())) + .filter(l -> l.size() > 1) + .flatMap(l -> { + String groupId = "group::" + UUID.randomUUID(); + List ids = sortIds(l); + List> rels = new ArrayList<>(); + + for (String source : ids) { + if (source.contains("openorgs____") || ids.indexOf(source) == 0) + for (String target : ids) { + rels.add(new Tuple3<>(source, target, groupId)); + } + } + return rels.iterator(); + }) + .rdd(), + Encoders.tuple(Encoders.STRING(), Encoders.STRING(), Encoders.STRING())); + + Dataset> relations2 = relations // + .joinWith(entities, relations.col("_2").equalTo(entities.col("_1")), "inner") + .map( + (MapFunction, Tuple2>, OrgSimRel>) r -> new OrgSimRel( + r._1()._1(), + r._2()._2().getOriginalId().get(0), + r._2()._2().getLegalname() != null ? r._2()._2().getLegalname().getValue() : "", + r._2()._2().getLegalshortname() != null ? r._2()._2().getLegalshortname().getValue() : "", + r._2()._2().getCountry() != null ? r._2()._2().getCountry().getClassid() : "", + r._2()._2().getWebsiteurl() != null ? r._2()._2().getWebsiteurl().getValue() : "", + r._2()._2().getCollectedfrom().get(0).getValue(), + r._1()._3()), + Encoders.bean(OrgSimRel.class)) + .map( + (MapFunction>) o -> new Tuple2<>(o.getLocal_id(), o), + Encoders.tuple(Encoders.STRING(), Encoders.bean(OrgSimRel.class))); + + return relations2 + .joinWith(entities, relations2.col("_1").equalTo(entities.col("_1")), "inner") + .map( + (MapFunction, Tuple2>, OrgSimRel>) r -> { + OrgSimRel orgSimRel = r._1()._2(); + orgSimRel.setLocal_id(r._2()._2().getOriginalId().get(0)); + return orgSimRel; + }, + Encoders.bean(OrgSimRel.class)); + + } + + // select best ids from the list. Priority: 1) openorgs, 2)corda, 3)alphabetic + public static List sortIds(List ids) { + + ids.sort((o1, o2) -> { + + if (o1.contains("openorgs____") && o2.contains("openorgs____")) + return o1.compareTo(o2); + if (o1.contains("corda") && o2.contains("corda")) + return o1.compareTo(o2); + + if (o1.contains("openorgs____")) + return -1; + if (o2.contains("openorgs____")) + return 1; + + if (o1.contains("corda")) + return -1; + if (o2.contains("corda")) + return 1; + + return o1.compareTo(o2); + }); + + return ids; + } + + public static Dataset createRelationsFromScratch( + final SparkSession spark, + final String mergeRelsPath, + final String entitiesPath) { + + // + Dataset> entities = spark + .read() + .textFile(entitiesPath) + .map( + (MapFunction>) it -> { + Organization entity = OBJECT_MAPPER.readValue(it, Organization.class); + return new Tuple2<>(entity.getId(), entity); + }, + Encoders.tuple(Encoders.STRING(), Encoders.kryo(Organization.class))); + + Dataset> relations = spark + .createDataset( + spark + .read() + .load(mergeRelsPath) + .as(Encoders.bean(Relation.class)) + .where("relClass == 'merges'") + .toJavaRDD() + .mapToPair(r -> new Tuple2<>(r.getSource(), r.getTarget())) + .groupByKey() + .flatMap(g -> { + List> rels = new ArrayList<>(); + for (String id1 : g._2()) { + for (String id2 : g._2()) { + if (!id1.equals(id2)) + if (id1.contains("openorgs____") && !id2.contains("openorgsmesh")) + rels.add(new Tuple2<>(id1, id2)); + } + } + return rels.iterator(); + }) + .rdd(), + Encoders.tuple(Encoders.STRING(), Encoders.STRING())); + + Dataset> relations2 = relations // + .joinWith(entities, relations.col("_2").equalTo(entities.col("_1")), "inner") + .map( + (MapFunction, Tuple2>, OrgSimRel>) r -> new OrgSimRel( + r._1()._1(), + r._2()._2().getOriginalId().get(0), + r._2()._2().getLegalname() != null ? r._2()._2().getLegalname().getValue() : "", + r._2()._2().getLegalshortname() != null ? r._2()._2().getLegalshortname().getValue() : "", + r._2()._2().getCountry() != null ? r._2()._2().getCountry().getClassid() : "", + r._2()._2().getWebsiteurl() != null ? r._2()._2().getWebsiteurl().getValue() : "", + r._2()._2().getCollectedfrom().get(0).getValue(), + "group::" + r._1()._1()), + Encoders.bean(OrgSimRel.class)) + .map( + (MapFunction>) o -> new Tuple2<>(o.getLocal_id(), o), + Encoders.tuple(Encoders.STRING(), Encoders.bean(OrgSimRel.class))); + + return relations2 + .joinWith(entities, relations2.col("_1").equalTo(entities.col("_1")), "inner") + .map( + (MapFunction, Tuple2>, OrgSimRel>) r -> { + OrgSimRel orgSimRel = r._1()._2(); + orgSimRel.setLocal_id(r._2()._2().getOriginalId().get(0)); + return orgSimRel; + }, + Encoders.bean(OrgSimRel.class)); + + } + +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPropagateRelation.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPropagateRelation.java index ae5bf9252..699039c99 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPropagateRelation.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPropagateRelation.java @@ -28,8 +28,7 @@ public class SparkPropagateRelation extends AbstractSparkAction { SOURCE, TARGET } - public SparkPropagateRelation(ArgumentApplicationParser parser, SparkSession spark) - throws Exception { + public SparkPropagateRelation(ArgumentApplicationParser parser, SparkSession spark) throws Exception { super(parser, spark); } diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/ConnectedComponent.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/ConnectedComponent.java index cd4f99f63..3f24adb93 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/ConnectedComponent.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/ConnectedComponent.java @@ -12,6 +12,7 @@ import org.codehaus.jackson.annotate.JsonIgnore; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.oa.dedup.DedupUtility; +import eu.dnetlib.dhp.utils.DHPUtils; import eu.dnetlib.pace.util.PaceException; public class ConnectedComponent implements Serializable { @@ -36,7 +37,7 @@ public class ConnectedComponent implements Serializable { if (docIds.size() > 1) { final String s = getMin(); String prefix = s.split("\\|")[0]; - ccId = prefix + "|dedup_wf_001::" + DedupUtility.md5(s); + ccId = prefix + "|dedup_wf_001::" + DHPUtils.md5(s); return ccId; } else { return docIds.iterator().next(); diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/Identifier.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/Identifier.java new file mode 100644 index 000000000..f5b2f48c5 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/Identifier.java @@ -0,0 +1,146 @@ + +package eu.dnetlib.dhp.oa.dedup.model; + +import java.io.Serializable; +import java.util.Date; +import java.util.List; +import java.util.Set; +import java.util.stream.Collectors; + +import com.google.common.collect.Sets; +import eu.dnetlib.dhp.oa.dedup.IdGenerator; +import eu.dnetlib.dhp.schema.common.EntityType; +import eu.dnetlib.dhp.schema.oaf.KeyValue; +import eu.dnetlib.dhp.schema.oaf.StructuredProperty; + +public class Identifier implements Serializable, Comparable { + + StructuredProperty pid; + Date date; + PidType type; + List collectedFrom; + EntityType entityType; + String originalID; + + boolean useOriginal = false; // to know if the top identifier won because of the alphabetical order of the original + // ID + + public Identifier(StructuredProperty pid, Date date, PidType type, List collectedFrom, + EntityType entityType, String originalID) { + this.pid = pid; + this.date = date; + this.type = type; + this.collectedFrom = collectedFrom; + this.entityType = entityType; + this.originalID = originalID; + } + + public StructuredProperty getPid() { + return pid; + } + + public void setPid(StructuredProperty pid) { + this.pid = pid; + } + + public Date getDate() { + return date; + } + + public void setDate(Date date) { + this.date = date; + } + + public PidType getType() { + return type; + } + + public void setType(PidType type) { + this.type = type; + } + + public List getCollectedFrom() { + return collectedFrom; + } + + public void setCollectedFrom(List collectedFrom) { + this.collectedFrom = collectedFrom; + } + + public EntityType getEntityType() { + return entityType; + } + + public void setEntityType(EntityType entityType) { + this.entityType = entityType; + } + + public String getOriginalID() { + return originalID; + } + + public void setOriginalID(String originalID) { + this.originalID = originalID; + } + + public boolean isUseOriginal() { + return useOriginal; + } + + public void setUseOriginal(boolean useOriginal) { + this.useOriginal = useOriginal; + } + + @Override + public int compareTo(Identifier i) { + // priority in comparisons: 1) pidtype, 2) collectedfrom (depending on the entity type) , 3) date 4) + // alphabetical order of the originalID + + Set lKeys = Sets.newHashSet(); + if (this.collectedFrom != null) + lKeys = this.collectedFrom.stream().map(KeyValue::getKey).collect(Collectors.toSet()); + + Set rKeys = Sets.newHashSet(); + if (i.getCollectedFrom() != null) + rKeys = i.getCollectedFrom().stream().map(KeyValue::getKey).collect(Collectors.toSet()); + + if (this.getType().compareTo(i.getType()) == 0) { // same type + if (entityType == EntityType.publication) { + if (isFromDatasourceID(lKeys, IdGenerator.CROSSREF_ID) + && !isFromDatasourceID(rKeys, IdGenerator.CROSSREF_ID)) + return 1; + if (isFromDatasourceID(rKeys, IdGenerator.CROSSREF_ID) + && !isFromDatasourceID(lKeys, IdGenerator.CROSSREF_ID)) + return -1; + } + if (entityType == EntityType.dataset) { + if (isFromDatasourceID(lKeys, IdGenerator.DATACITE_ID) + && !isFromDatasourceID(rKeys, IdGenerator.DATACITE_ID)) + return 1; + if (isFromDatasourceID(rKeys, IdGenerator.DATACITE_ID) + && !isFromDatasourceID(lKeys, IdGenerator.DATACITE_ID)) + return -1; + } + + if (this.getDate().compareTo(i.getDate()) == 0) {// same date + + if (this.originalID.compareTo(i.originalID) < 0) + this.useOriginal = true; + else + i.setUseOriginal(true); + + // the minus because we need to take the alphabetically lower id + return -this.originalID.compareTo(i.originalID); + } else + // the minus is because we need to take the elder date + return -this.getDate().compareTo(i.getDate()); + } else { + return this.getType().compareTo(i.getType()); + } + + } + + public boolean isFromDatasourceID(Set collectedFrom, String dsId) { + return collectedFrom.contains(dsId); + } +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/OrgSimRel.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/OrgSimRel.java new file mode 100644 index 000000000..65f383500 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/OrgSimRel.java @@ -0,0 +1,108 @@ + +package eu.dnetlib.dhp.oa.dedup.model; + +import java.io.Serializable; + +public class OrgSimRel implements Serializable { + + String local_id; + String oa_original_id; + String oa_name; + String oa_acronym; + String oa_country; + String oa_url; + String oa_collectedfrom; + String group_id; + + public OrgSimRel() { + } + + public OrgSimRel(String local_id, String oa_original_id, String oa_name, String oa_acronym, String oa_country, + String oa_url, String oa_collectedfrom, String group_id) { + this.local_id = local_id; + this.oa_original_id = oa_original_id; + this.oa_name = oa_name; + this.oa_acronym = oa_acronym; + this.oa_country = oa_country; + this.oa_url = oa_url; + this.oa_collectedfrom = oa_collectedfrom; + this.group_id = group_id; + } + + public String getLocal_id() { + return local_id; + } + + public void setLocal_id(String local_id) { + this.local_id = local_id; + } + + public String getOa_original_id() { + return oa_original_id; + } + + public void setOa_original_id(String oa_original_id) { + this.oa_original_id = oa_original_id; + } + + public String getOa_name() { + return oa_name; + } + + public void setOa_name(String oa_name) { + this.oa_name = oa_name; + } + + public String getOa_acronym() { + return oa_acronym; + } + + public void setOa_acronym(String oa_acronym) { + this.oa_acronym = oa_acronym; + } + + public String getOa_country() { + return oa_country; + } + + public void setOa_country(String oa_country) { + this.oa_country = oa_country; + } + + public String getOa_url() { + return oa_url; + } + + public void setOa_url(String oa_url) { + this.oa_url = oa_url; + } + + public String getOa_collectedfrom() { + return oa_collectedfrom; + } + + public void setOa_collectedfrom(String oa_collectedfrom) { + this.oa_collectedfrom = oa_collectedfrom; + } + + public String getGroup_id() { + return group_id; + } + + public void setGroup_id(String group_id) { + this.group_id = group_id; + } + + @Override + public String toString() { + return "OrgSimRel{" + + "local_id='" + local_id + '\'' + + ", oa_original_id='" + oa_original_id + '\'' + + ", oa_name='" + oa_name + '\'' + + ", oa_acronym='" + oa_acronym + '\'' + + ", oa_country='" + oa_country + '\'' + + ", oa_url='" + oa_url + '\'' + + ", oa_collectedfrom='" + oa_collectedfrom + '\'' + + '}'; + } +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/PidType.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/PidType.java new file mode 100644 index 000000000..cb9b2bd15 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/PidType.java @@ -0,0 +1,17 @@ + +package eu.dnetlib.dhp.oa.dedup.model; + +public enum PidType { + + // from the less to the more important + undefined, original, orcid, ror, grid, pdb, arXiv, pmid, pmc, doi; + + public static PidType classidValueOf(String s) { + try { + return PidType.valueOf(s); + } catch (Exception e) { + return PidType.undefined; + } + } + +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/collectSimRels_parameters.json b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/collectSimRels_parameters.json new file mode 100644 index 000000000..da1011371 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/collectSimRels_parameters.json @@ -0,0 +1,44 @@ +[ + { + "paramName": "la", + "paramLongName": "isLookUpUrl", + "paramDescription": "address for the LookUp", + "paramRequired": true + }, + { + "paramName": "asi", + "paramLongName": "actionSetId", + "paramDescription": "action set identifier (name of the orchestrator)", + "paramRequired": true + }, + { + "paramName": "w", + "paramLongName": "workingPath", + "paramDescription": "path of the working directory", + "paramRequired": true + }, + { + "paramName": "np", + "paramLongName": "numPartitions", + "paramDescription": "number of partitions for the similarity relations intermediate phases", + "paramRequired": false + }, + { + "paramName": "purl", + "paramLongName": "postgresUrl", + "paramDescription": "the url of the postgres server", + "paramRequired": true + }, + { + "paramName": "pusr", + "paramLongName": "postgresUser", + "paramDescription": "the owner of the postgres database", + "paramRequired": true + }, + { + "paramName": "ppwd", + "paramLongName": "postgresPassword", + "paramDescription": "the password for the postgres user", + "paramRequired": true + } +] \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/neworgs/oozie_app/config-default.xml b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/neworgs/oozie_app/config-default.xml new file mode 100644 index 000000000..2e0ed9aee --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/neworgs/oozie_app/config-default.xml @@ -0,0 +1,18 @@ + + + jobTracker + yarnRM + + + nameNode + hdfs://nameservice1 + + + oozie.use.system.libpath + true + + + oozie.action.sharelib.for.spark + spark2 + + \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/neworgs/oozie_app/workflow.xml b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/neworgs/oozie_app/workflow.xml new file mode 100644 index 000000000..9bfdaaebd --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/neworgs/oozie_app/workflow.xml @@ -0,0 +1,208 @@ + + + + graphBasePath + the raw graph base path + + + isLookUpUrl + the address of the lookUp service + + + actionSetId + id of the actionSet + + + workingPath + path for the working directory + + + dedupGraphPath + path for the output graph + + + cutConnectedComponent + max number of elements in a connected component + + + dbUrl + the url of the database + + + dbUser + the user of the database + + + dbTable + the name of the table in the database + + + dbPwd + the passowrd of the user of the database + + + sparkDriverMemory + memory for driver process + + + sparkExecutorMemory + memory for individual executor + + + sparkExecutorCores + number of cores used by single executor + + + oozieActionShareLibForSpark2 + oozie action sharelib for spark 2.* + + + spark2ExtraListeners + com.cloudera.spark.lineage.NavigatorAppListener + spark 2.* extra listeners classname + + + spark2SqlQueryExecutionListeners + com.cloudera.spark.lineage.NavigatorQueryListener + spark 2.* sql query execution listeners classname + + + spark2YarnHistoryServerAddress + spark 2.* yarn history server address + + + spark2EventLogDir + spark 2.* event log dir location + + + + + ${jobTracker} + ${nameNode} + + + mapreduce.job.queuename + ${queueName} + + + oozie.launcher.mapred.job.queue.name + ${oozieLauncherQueueName} + + + oozie.action.sharelib.for.spark + ${oozieActionShareLibForSpark2} + + + + + + + + Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}] + + + + + + + + + + + + + -pb + ${graphBasePath}/relation + ${workingPath}/${actionSetId}/organization_simrel + + + + + + + + yarn + cluster + Create Similarity Relations + eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --workingPath${workingPath} + --numPartitions8000 + + + + + + + + yarn + cluster + Create Merge Relations + eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --workingPath${workingPath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --cutConnectedComponent${cutConnectedComponent} + + + + + + + + yarn + cluster + Prepare New Organizations + eu.dnetlib.dhp.oa.dedup.SparkPrepareNewOrgs + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --workingPath${workingPath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --dbUrl${dbUrl} + --dbTable${dbTable} + --dbUser${dbUser} + --dbPwd${dbPwd} + --numConnections20 + + + + + + + \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/orgsdedup/oozie_app/config-default.xml b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/orgsdedup/oozie_app/config-default.xml new file mode 100644 index 000000000..2e0ed9aee --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/orgsdedup/oozie_app/config-default.xml @@ -0,0 +1,18 @@ + + + jobTracker + yarnRM + + + nameNode + hdfs://nameservice1 + + + oozie.use.system.libpath + true + + + oozie.action.sharelib.for.spark + spark2 + + \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/orgsdedup/oozie_app/workflow.xml b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/orgsdedup/oozie_app/workflow.xml new file mode 100644 index 000000000..e7c95ee8d --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/orgsdedup/oozie_app/workflow.xml @@ -0,0 +1,240 @@ + + + + graphBasePath + the raw graph base path + + + isLookUpUrl + the address of the lookUp service + + + actionSetId + id of the actionSet + + + workingPath + path for the working directory + + + dedupGraphPath + path for the output graph + + + cutConnectedComponent + max number of elements in a connected component + + + dbUrl + the url of the database + + + dbUser + the user of the database + + + dbTable + the name of the table in the database + + + dbPwd + the passowrd of the user of the database + + + sparkDriverMemory + memory for driver process + + + sparkExecutorMemory + memory for individual executor + + + sparkExecutorCores + number of cores used by single executor + + + oozieActionShareLibForSpark2 + oozie action sharelib for spark 2.* + + + spark2ExtraListeners + com.cloudera.spark.lineage.NavigatorAppListener + spark 2.* extra listeners classname + + + spark2SqlQueryExecutionListeners + com.cloudera.spark.lineage.NavigatorQueryListener + spark 2.* sql query execution listeners classname + + + spark2YarnHistoryServerAddress + spark 2.* yarn history server address + + + spark2EventLogDir + spark 2.* event log dir location + + + + + ${jobTracker} + ${nameNode} + + + mapreduce.job.queuename + ${queueName} + + + oozie.launcher.mapred.job.queue.name + ${oozieLauncherQueueName} + + + oozie.action.sharelib.for.spark + ${oozieActionShareLibForSpark2} + + + + + + + + Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}] + + + + + + + + + + + + + -pb + /tmp/graph_openorgs_and_corda/relation + ${workingPath}/${actionSetId}/organization_simrel + + + + + + + + yarn + cluster + Create Similarity Relations + eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --workingPath${workingPath} + --numPartitions8000 + + + + + + + + yarn + cluster + Create Merge Relations + eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --workingPath${workingPath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --cutConnectedComponent${cutConnectedComponent} + + + + + + + + yarn + cluster + Prepare Organization Relations + eu.dnetlib.dhp.oa.dedup.SparkPrepareOrgRels + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --workingPath${workingPath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --dbUrl${dbUrl} + --dbTable${dbTable} + --dbUser${dbUser} + --dbPwd${dbPwd} + --numConnections20 + + + + + + + + yarn + cluster + Prepare New Organizations + eu.dnetlib.dhp.oa.dedup.SparkPrepareNewOrgs + dhp-dedup-openaire-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + --conf spark.sql.shuffle.partitions=3840 + + --graphBasePath${graphBasePath} + --workingPath${workingPath} + --isLookUpUrl${isLookUpUrl} + --actionSetId${actionSetId} + --apiUrl${apiUrl} + --dbUrl${dbUrl} + --dbTable${dbTable} + --dbUser${dbUser} + --dbPwd${dbPwd} + --numConnections20 + + + + + + + \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/prepareNewOrgs_parameters.json b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/prepareNewOrgs_parameters.json new file mode 100644 index 000000000..b70d1af28 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/prepareNewOrgs_parameters.json @@ -0,0 +1,62 @@ +[ + { + "paramName": "i", + "paramLongName": "graphBasePath", + "paramDescription": "the base path of raw graph", + "paramRequired": true + }, + { + "paramName": "w", + "paramLongName": "workingPath", + "paramDescription": "the working directory path", + "paramRequired": true + }, + { + "paramName": "la", + "paramLongName": "isLookUpUrl", + "paramDescription": "the url of the lookup service", + "paramRequired": true + }, + { + "paramName": "asi", + "paramLongName": "actionSetId", + "paramDescription": "the id of the actionset (orchestrator)", + "paramRequired": true + }, + { + "paramName": "nc", + "paramLongName": "numConnections", + "paramDescription": "number of connections to the postgres db (for the write operation)", + "paramRequired": false + }, + { + "paramName": "au", + "paramLongName": "apiUrl", + "paramDescription": "the url for the APIs of the openorgs service", + "paramRequired": false + }, + { + "paramName": "du", + "paramLongName": "dbUrl", + "paramDescription": "the url of the database", + "paramRequired": true + }, + { + "paramName": "dusr", + "paramLongName": "dbUser", + "paramDescription": "the user of the database", + "paramRequired": true + }, + { + "paramName": "t", + "paramLongName": "dbTable", + "paramDescription": "the name of the table in the database", + "paramRequired": true + }, + { + "paramName": "dpwd", + "paramLongName": "dbPwd", + "paramDescription": "the password for the user of the database", + "paramRequired": true + } +] \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/prepareOrgRels_parameters.json b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/prepareOrgRels_parameters.json new file mode 100644 index 000000000..2119cbc3a --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/prepareOrgRels_parameters.json @@ -0,0 +1,56 @@ +[ + { + "paramName": "i", + "paramLongName": "graphBasePath", + "paramDescription": "the base path of raw graph", + "paramRequired": true + }, + { + "paramName": "w", + "paramLongName": "workingPath", + "paramDescription": "the working directory path", + "paramRequired": true + }, + { + "paramName": "la", + "paramLongName": "isLookUpUrl", + "paramDescription": "the url of the lookup service", + "paramRequired": true + }, + { + "paramName": "asi", + "paramLongName": "actionSetId", + "paramDescription": "the id of the actionset (orchestrator)", + "paramRequired": true + }, + { + "paramName": "nc", + "paramLongName": "numConnections", + "paramDescription": "number of connections to the postgres db (for the write operation)", + "paramRequired": false + }, + { + "paramName": "du", + "paramLongName": "dbUrl", + "paramDescription": "the url of the database", + "paramRequired": true + }, + { + "paramName": "dusr", + "paramLongName": "dbUser", + "paramDescription": "the user of the database", + "paramRequired": true + }, + { + "paramName": "t", + "paramLongName": "dbTable", + "paramDescription": "the name of the table in the database", + "paramRequired": true + }, + { + "paramName": "dpwd", + "paramLongName": "dbPwd", + "paramDescription": "the password for the user of the database", + "paramRequired": true + } +] \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java index 30cfebe79..bb4188f7e 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java @@ -23,10 +23,13 @@ public class EntityMergerTest implements Serializable { List> publications; List> publications2; + List> publications3; + List> publications4; + List> publications5; String testEntityBasePath; DataInfo dataInfo; - String dedupId = "dedup_id"; + String dedupId = "00|dedup_id::1"; Publication pub_top; @BeforeEach @@ -39,6 +42,9 @@ public class EntityMergerTest implements Serializable { publications = readSample(testEntityBasePath + "/publication_merge.json", Publication.class); publications2 = readSample(testEntityBasePath + "/publication_merge2.json", Publication.class); + publications3 = readSample(testEntityBasePath + "/publication_merge3.json", Publication.class); + publications4 = readSample(testEntityBasePath + "/publication_merge4.json", Publication.class); + publications5 = readSample(testEntityBasePath + "/publication_merge5.json", Publication.class); pub_top = getTopPub(publications); @@ -48,6 +54,7 @@ public class EntityMergerTest implements Serializable { @Test public void softwareMergerTest() throws InstantiationException, IllegalAccessException { + List> softwares = readSample( testEntityBasePath + "/software_merge.json", Software.class); @@ -55,6 +62,9 @@ public class EntityMergerTest implements Serializable { .entityMerger(dedupId, softwares.iterator(), 0, dataInfo, Software.class); assertEquals(merged.getBestaccessright().getClassid(), "OPEN SOURCE"); + + assertEquals(merged.getId(), "50|dedup_doi___::0968af610a356656706657e4f234b340"); + } @Test @@ -63,7 +73,8 @@ public class EntityMergerTest implements Serializable { Publication pub_merged = DedupRecordFactory .entityMerger(dedupId, publications.iterator(), 0, dataInfo, Publication.class); - assertEquals(dedupId, pub_merged.getId()); + // verify id + assertEquals(pub_merged.getId(), "50|dedup_doi___::0968af610a356656706657e4f234b340"); assertEquals(pub_merged.getJournal(), pub_top.getJournal()); assertEquals(pub_merged.getBestaccessright().getClassid(), "OPEN"); @@ -118,9 +129,40 @@ public class EntityMergerTest implements Serializable { Publication pub_merged = DedupRecordFactory .entityMerger(dedupId, publications2.iterator(), 0, dataInfo, Publication.class); - assertEquals(pub_merged.getAuthor().size(), 27); - // insert assertions here + // verify id + assertEquals("50|dedup_doi___::0ca46ff10b2b4c756191719d85302b14", pub_merged.getId()); + assertEquals(pub_merged.getAuthor().size(), 27); + } + + @Test + public void publicationMergerTest3() throws InstantiationException, IllegalAccessException { + + Publication pub_merged = DedupRecordFactory + .entityMerger(dedupId, publications3.iterator(), 0, dataInfo, Publication.class); + + // verify id + assertEquals("50|dedup_doi___::0ca46ff10b2b4c756191719d85302b14", pub_merged.getId()); + } + + @Test + public void publicationMergerTest4() throws InstantiationException, IllegalStateException, IllegalAccessException { + + Publication pub_merged = DedupRecordFactory + .entityMerger(dedupId, publications4.iterator(), 0, dataInfo, Publication.class); + + // verify id + assertEquals("50|dedup_wf_001::2d2bbbbcfb285e3fb3590237b79e2fa8", pub_merged.getId()); + } + + @Test + public void publicationMergerTest5() throws InstantiationException, IllegalStateException, IllegalAccessException { + + Publication pub_merged = DedupRecordFactory + .entityMerger(dedupId, publications5.iterator(), 0, dataInfo, Publication.class); + + // verify id + assertEquals("50|dedup_wf_001::584b89679c3ccd1015b647ec63cc2699", pub_merged.getId()); } public DataInfo setDI() { diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/IdGeneratorTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/IdGeneratorTest.java new file mode 100644 index 000000000..403498aeb --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/IdGeneratorTest.java @@ -0,0 +1,159 @@ + +package eu.dnetlib.dhp.oa.dedup; + +import static org.junit.jupiter.api.Assertions.assertEquals; + +import java.io.BufferedReader; +import java.io.FileReader; +import java.io.IOException; +import java.nio.file.Paths; +import java.text.SimpleDateFormat; +import java.util.ArrayList; +import java.util.Date; +import java.util.List; +import java.util.stream.Collectors; + +import org.codehaus.jackson.map.ObjectMapper; +import org.junit.jupiter.api.*; + +import com.google.common.collect.Lists; + +import eu.dnetlib.dhp.oa.dedup.model.Identifier; +import eu.dnetlib.dhp.oa.dedup.model.PidType; +import eu.dnetlib.dhp.schema.common.EntityType; +import eu.dnetlib.dhp.schema.oaf.KeyValue; +import eu.dnetlib.dhp.schema.oaf.Publication; +import eu.dnetlib.dhp.schema.oaf.Qualifier; +import eu.dnetlib.dhp.schema.oaf.StructuredProperty; +import eu.dnetlib.pace.util.MapDocumentUtil; +import scala.Tuple2; + +@TestMethodOrder(MethodOrderer.OrderAnnotation.class) +public class IdGeneratorTest { + + private static List bestIds; + private static List> pubs; + + private static List bestIds2; + private static List bestIds3; + + private static String testEntityBasePath; + + private static SimpleDateFormat sdf; + private static Date baseDate; + + @BeforeAll + public static void setUp() throws Exception { + + sdf = new SimpleDateFormat("yyyy-MM-dd"); + baseDate = sdf.parse("2000-01-01"); + + bestIds = new ArrayList<>(); + bestIds2 = Lists + .newArrayList( + new Identifier(pid("pid1", "original", "original"), baseDate, PidType.original, + keyValue("key", "value"), EntityType.publication, "50|originalID1"), + new Identifier(pid("pid2", "original", "original"), baseDate, PidType.original, + keyValue("key", "value"), EntityType.publication, "50|originalID2"), + new Identifier(pid("pid3", "original", "original"), baseDate, PidType.original, + keyValue("key", "value"), EntityType.publication, "50|originalID3")); + bestIds3 = Lists + .newArrayList( + new Identifier(pid("pid1", "original", "original"), baseDate, PidType.original, + keyValue("key", "value"), EntityType.publication, "50|originalID1"), + new Identifier(pid("pid2", "doi", "doi"), baseDate, PidType.doi, keyValue("key", "value"), + EntityType.publication, "50|originalID2"), + new Identifier(pid("pid3", "original", "original"), baseDate, PidType.original, + keyValue("key", "value"), EntityType.publication, "50|originalID3")); + + testEntityBasePath = Paths + .get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/json").toURI()) + .toFile() + .getAbsolutePath(); + + pubs = readSample(testEntityBasePath + "/publication_idgeneration.json", Publication.class); + + } + + @Test + @Order(1) + public void bestPidToIdentifierTest() { + + List typesForAssertions = Lists + .newArrayList(PidType.pmc.toString(), PidType.doi.toString(), PidType.doi.toString()); + + for (Tuple2 pub : pubs) { + List ids = IdGenerator.bestPidToIdentifier(pub._2()); + assertEquals(typesForAssertions.get(pubs.indexOf(pub)), ids.get(0).getPid().getQualifier().getClassid()); + bestIds.addAll(ids); + } + } + + @Test + @Order(2) + public void generateIdTest1() { + String id1 = IdGenerator.generate(bestIds, "50|defaultID"); + + System.out.println("id list 1 = " + bestIds.stream().map(i -> i.getPid().getValue()).collect(Collectors.toList())); + + assertEquals("50|dedup_wf_001::9c5cfbf993d38476e0f959a301239719", id1); + } + + @Test + public void generateIdTest2() { + String id1 = IdGenerator.generate(bestIds2, "50|defaultID"); + String id2 = IdGenerator.generate(bestIds3, "50|defaultID"); + + System.out.println("id list 2 = " + bestIds2.stream().map(i -> i.getPid().getValue()).collect(Collectors.toList())); + System.out.println("winner 2 = " + id1); + System.out.println("id list 3 = " + bestIds3.stream().map(i -> i.getPid().getValue()).collect(Collectors.toList())); + System.out.println("winner 3 = " + id2); + + assertEquals("50|dedup_wf_001::2c56cc1914bffdb30fdff354e0099612", id1); + assertEquals("50|dedup_doi___::128ead3ed8d9ecf262704b6fcf592b8d", id2); + } + + public static List> readSample(String path, Class clazz) { + List> res = new ArrayList<>(); + BufferedReader reader; + try { + reader = new BufferedReader(new FileReader(path)); + String line = reader.readLine(); + while (line != null) { + res + .add( + new Tuple2<>( + MapDocumentUtil.getJPathString("$.id", line), + new ObjectMapper().readValue(line, clazz))); + // read next line + line = reader.readLine(); + } + reader.close(); + } catch (IOException e) { + e.printStackTrace(); + } + + return res; + } + + public static StructuredProperty pid(String pid, String classid, String classname) { + + StructuredProperty sp = new StructuredProperty(); + sp.setValue(pid); + Qualifier q = new Qualifier(); + q.setSchemeid(classid); + q.setSchemename(classname); + q.setClassname(classname); + q.setClassid(classid); + sp.setQualifier(q); + return sp; + } + + public static List keyValue(String key, String value) { + + KeyValue kv = new KeyValue(); + kv.setKey(key); + kv.setValue(value); + return Lists.newArrayList(kv); + } +} diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java index 2c1607165..b849160ff 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java @@ -1,22 +1,12 @@ package eu.dnetlib.dhp.oa.dedup; -import static java.nio.file.Files.createTempDirectory; - -import static org.apache.spark.sql.functions.col; -import static org.apache.spark.sql.functions.count; -import static org.junit.jupiter.api.Assertions.assertEquals; -import static org.mockito.Mockito.lenient; - -import java.io.File; -import java.io.IOException; -import java.io.Serializable; -import java.net.URISyntaxException; -import java.nio.file.Paths; -import java.util.HashSet; -import java.util.Set; -import java.util.stream.Collectors; - +import com.fasterxml.jackson.databind.ObjectMapper; +import eu.dnetlib.dhp.application.ArgumentApplicationParser; +import eu.dnetlib.dhp.schema.oaf.Relation; +import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; +import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; +import eu.dnetlib.pace.util.MapDocumentUtil; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; @@ -35,16 +25,19 @@ import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.Mock; import org.mockito.Mockito; import org.mockito.junit.jupiter.MockitoExtension; - -import com.fasterxml.jackson.databind.ObjectMapper; - -import eu.dnetlib.dhp.application.ArgumentApplicationParser; -import eu.dnetlib.dhp.schema.oaf.Relation; -import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; -import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; -import eu.dnetlib.pace.util.MapDocumentUtil; import scala.Tuple2; +import java.io.File; +import java.io.IOException; +import java.io.Serializable; +import java.net.URISyntaxException; +import java.nio.file.Paths; + +import static java.nio.file.Files.createTempDirectory; +import static org.apache.spark.sql.functions.count; +import static org.junit.jupiter.api.Assertions.assertEquals; +import static org.mockito.Mockito.lenient; + @ExtendWith(MockitoExtension.class) @TestMethodOrder(MethodOrderer.OrderAnnotation.class) public class SparkDedupTest implements Serializable { @@ -59,6 +52,7 @@ public class SparkDedupTest implements Serializable { private static String testOutputBasePath; private static String testDedupGraphBasePath; private static final String testActionSetId = "test-orchestrator"; + private static String testDedupAssertionsBasePath; @BeforeAll public static void cleanUp() throws IOException, URISyntaxException { @@ -73,6 +67,10 @@ public class SparkDedupTest implements Serializable { testDedupGraphBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-") .toAbsolutePath() .toString(); + testDedupAssertionsBasePath = Paths + .get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/assertions").toURI()) + .toFile() + .getAbsolutePath(); FileUtils.deleteDirectory(new File(testOutputBasePath)); FileUtils.deleteDirectory(new File(testDedupGraphBasePath)); @@ -87,6 +85,7 @@ public class SparkDedupTest implements Serializable { .getOrCreate(); jsc = JavaSparkContext.fromSparkContext(spark.sparkContext()); + } @BeforeEach @@ -157,6 +156,7 @@ public class SparkDedupTest implements Serializable { SparkCreateSimRels.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json"))); + parser .parseArgument( new String[] { @@ -171,27 +171,27 @@ public class SparkDedupTest implements Serializable { long orgs_simrel = spark .read() - .textFile(testOutputBasePath + "/" + testActionSetId + "/organization_simrel") + .load(testOutputBasePath + "/" + testActionSetId + "/organization_simrel") .count(); long pubs_simrel = spark .read() - .textFile(testOutputBasePath + "/" + testActionSetId + "/publication_simrel") + .load(testOutputBasePath + "/" + testActionSetId + "/publication_simrel") .count(); long sw_simrel = spark .read() - .textFile(testOutputBasePath + "/" + testActionSetId + "/software_simrel") + .load(testOutputBasePath + "/" + testActionSetId + "/software_simrel") .count(); long ds_simrel = spark .read() - .textFile(testOutputBasePath + "/" + testActionSetId + "/dataset_simrel") + .load(testOutputBasePath + "/" + testActionSetId + "/dataset_simrel") .count(); long orp_simrel = spark .read() - .textFile(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_simrel") + .load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_simrel") .count(); assertEquals(3082, orgs_simrel); @@ -203,6 +203,67 @@ public class SparkDedupTest implements Serializable { @Test @Order(2) + public void collectSimRelsTest() throws Exception { + ArgumentApplicationParser parser = new ArgumentApplicationParser( + IOUtils + .toString( + SparkCollectSimRels.class + .getResourceAsStream( + "/eu/dnetlib/dhp/oa/dedup/collectSimRels_parameters.json"))); + parser + .parseArgument( + new String[] { + "-asi", testActionSetId, + "-la", "lookupurl", + "-w", testOutputBasePath, + "-np", "50", + "-purl", "jdbc:postgresql://localhost:5432/dnet_dedup", + "-pusr", "postgres_user", + "-ppwd", "" + }); + + new SparkCollectSimRels( + parser, + spark, + spark.read().load(testDedupAssertionsBasePath + "/similarity_groups"), + spark.read().load(testDedupAssertionsBasePath + "/groups")) + .run(isLookUpService); + + long orgs_simrel = spark + .read() + .load(testOutputBasePath + "/" + testActionSetId + "/organization_simrel") + .count(); + + long pubs_simrel = spark + .read() + .load(testOutputBasePath + "/" + testActionSetId + "/publication_simrel") + .count(); + + long sw_simrel = spark + .read() + .load(testOutputBasePath + "/" + testActionSetId + "/software_simrel") + .count(); + + long ds_simrel = spark + .read() + .load(testOutputBasePath + "/" + testActionSetId + "/dataset_simrel") + .count(); + + long orp_simrel = spark + .read() + .load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_simrel") + .count(); + + assertEquals(3672, orgs_simrel); + assertEquals(10459, pubs_simrel); + assertEquals(3767, sw_simrel); + assertEquals(3865, ds_simrel); + assertEquals(10173, orp_simrel); + + } + + @Test + @Order(3) public void cutMergeRelsTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( @@ -211,6 +272,7 @@ public class SparkDedupTest implements Serializable { SparkCreateMergeRels.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json"))); + parser .parseArgument( new String[] { @@ -297,7 +359,7 @@ public class SparkDedupTest implements Serializable { } @Test - @Order(3) + @Order(4) public void createMergeRelsTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( @@ -306,6 +368,7 @@ public class SparkDedupTest implements Serializable { SparkCreateMergeRels.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json"))); + parser .parseArgument( new String[] { @@ -351,7 +414,7 @@ public class SparkDedupTest implements Serializable { } @Test - @Order(4) + @Order(5) public void createDedupRecordTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( @@ -390,7 +453,7 @@ public class SparkDedupTest implements Serializable { testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_deduprecord") .count(); - assertEquals(85, orgs_deduprecord); + assertEquals(84, orgs_deduprecord); assertEquals(65, pubs_deduprecord); assertEquals(51, sw_deduprecord); assertEquals(97, ds_deduprecord); @@ -398,7 +461,7 @@ public class SparkDedupTest implements Serializable { } @Test - @Order(5) + @Order(6) public void updateEntityTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( @@ -474,7 +537,7 @@ public class SparkDedupTest implements Serializable { .count(); assertEquals(896, publications); - assertEquals(838, organizations); + assertEquals(837, organizations); assertEquals(100, projects); assertEquals(100, datasource); assertEquals(200, softwares); @@ -514,7 +577,7 @@ public class SparkDedupTest implements Serializable { } @Test - @Order(6) + @Order(7) public void propagateRelationTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( @@ -564,7 +627,7 @@ public class SparkDedupTest implements Serializable { } @Test - @Order(7) + @Order(8) public void testRelations() throws Exception { testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_1.json", 12, 10); testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_2.json", 10, 2); diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/._SUCCESS.crc b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/._SUCCESS.crc new file mode 100644 index 000000000..3b7b04493 Binary files /dev/null and b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/._SUCCESS.crc differ diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/.part-00000-4bafcd13-3995-4d26-9cf4-eae22806175b-c000.snappy.parquet.crc b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/.part-00000-4bafcd13-3995-4d26-9cf4-eae22806175b-c000.snappy.parquet.crc new file mode 100644 index 000000000..de674144d Binary files /dev/null and b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/.part-00000-4bafcd13-3995-4d26-9cf4-eae22806175b-c000.snappy.parquet.crc differ diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/_SUCCESS b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/_SUCCESS new file mode 100644 index 000000000..e69de29bb diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/part-00000-4bafcd13-3995-4d26-9cf4-eae22806175b-c000.snappy.parquet b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/part-00000-4bafcd13-3995-4d26-9cf4-eae22806175b-c000.snappy.parquet new file mode 100644 index 000000000..ea7655139 Binary files /dev/null and b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/groups/part-00000-4bafcd13-3995-4d26-9cf4-eae22806175b-c000.snappy.parquet differ diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/._SUCCESS.crc b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/._SUCCESS.crc new file mode 100644 index 000000000..3b7b04493 Binary files /dev/null and b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/._SUCCESS.crc differ diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/.part-00000-ad5faba8-5922-42f1-a215-1619e7bb4e5d-c000.snappy.parquet.crc b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/.part-00000-ad5faba8-5922-42f1-a215-1619e7bb4e5d-c000.snappy.parquet.crc new file mode 100644 index 000000000..9ac084585 Binary files /dev/null and b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/.part-00000-ad5faba8-5922-42f1-a215-1619e7bb4e5d-c000.snappy.parquet.crc differ diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/_SUCCESS b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/_SUCCESS new file mode 100644 index 000000000..e69de29bb diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/part-00000-ad5faba8-5922-42f1-a215-1619e7bb4e5d-c000.snappy.parquet b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/part-00000-ad5faba8-5922-42f1-a215-1619e7bb4e5d-c000.snappy.parquet new file mode 100644 index 000000000..e494e5ac0 Binary files /dev/null and b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/assertions/similarity_groups/part-00000-ad5faba8-5922-42f1-a215-1619e7bb4e5d-c000.snappy.parquet differ diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_idgeneration.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_idgeneration.json new file mode 100644 index 000000000..b2300acc6 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_idgeneration.json @@ -0,0 +1,3 @@ +{"context": [], "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "sysimport:crosswalk:datasetarchive", "classname": "sysimport:crosswalk:datasetarchive", "schemename": "dnet:provenanceActions", "schemeid": "dnet:provenanceActions"}, "inferred": false, "inferenceprovenance": "dedup-similarity-result-levenstein", "invisible": false, "trust": "0.95"}, "resourcetype": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "pid": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "arXiv", "classname": "arXiv", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "arXivSampleID"} ,{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "pmc", "classname": "pmc", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "pmcsampleid"}], "contributor": [], "resulttype": {"classid": "publication", "classname": "publication", "schemename": "dnet:result_typologies", "schemeid": "dnet:result_typologies"}, "relevantdate": [], "collectedfrom": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "Journal.fi", "key": "10|openaire____::6eef8049d0feedc089ee009abca55e35"}], "id": "50|a89337edbe55::4930db9e954866d70916cbfba9f81f97", "subject": [], "instance": [{"refereed": null, "hostedby": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "Journal.fi", "key": "10|openaire____::6eef8049d0feedc089ee009abca55e35"}, "processingchargeamount": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "license": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "url": [], "distributionlocation": "", "processingchargecurrency": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2016-01-01"}, "collectedfrom": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "Journal.fi", "key": "10|openaire____::6eef8049d0feedc089ee009abca55e35"}, "accessright": {"classid": "OPEN", "classname": "Open Access", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "instancetype": {"classid": "0001", "classname": "Article", "schemename": "dnet:dataCite_resource", "schemeid": "dnet:dataCite_resource"}}], "embargoenddate": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "lastupdatetimestamp": 0, "author": [{"surname": "Go\\u0308tz", "name": "Julia", "pid": [], "rank": 5, "affiliation": [], "fullname": "G\\u00f6tz, Julia"}, {"surname": "Wolff", "name": "Stephan", "pid": [], "rank": 6, "affiliation": [], "fullname": "Wolff, Stephan"}, {"surname": "Jansen", "name": "Olav", "pid": [], "rank": 7, "affiliation": [], "fullname": "Jansen, Olav"}, {"surname": "Dressler", "name": "Dirk", "pid": [{"qualifier": {"classid": "ORCID", "classname": "ORCID"}, "value": "0000-0000-0656-9999"},{"qualifier": {"classid": "id", "classname": "id"}, "value": "987654321"}], "rank": 8, "affiliation": [], "fullname": "Dressler, Dirk"}, {"surname": "Schneider", "name": "Susanne A.", "pid": [], "rank": 9, "affiliation": [], "fullname": "Schneider, Susanne A."}], "source": [], "dateofcollection": "2019-11-05T14:49:22.351Z", "fulltext": [], "dateoftransformation": "2019-11-05T16:10:58.988Z", "description": [], "format": [], "journal": {"issnPrinted": "1459-6067", "conferencedate": "", "conferenceplace": "", "name": "Agricultural and Food Science", "edition": "", "iss": "3", "sp": "", "vol": "27", "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "issnOnline": "1795-1895", "ep": "", "issnLinking": ""}, "coverage": [], "publisher": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "language": {"classid": "eng", "classname": "English", "schemename": "dnet:languages", "schemeid": "dnet:languages"}, "bestaccessright": {"classid": "OPEN", "classname": "Open Access", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "country": [], "extraInfo": [], "originalId": [], "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2018-09-30"}, "title": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "main title", "classname": "main title", "schemename": "dnet:dataCite_title", "schemeid": "dnet:dataCite_title"}, "value": "Altered brain activation in a reversal learning task unmasks adaptive changes in cognitive control in writer's cramp"}]} +{"context": [], "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "sysimport:crosswalk:repository", "classname": "sysimport:crosswalk:repository", "schemename": "dnet:provenanceActions", "schemeid": "dnet:provenanceActions"}, "inferred": true, "inferenceprovenance": "dedup-similarity-result-levenstein", "invisible": false, "trust": "0.9"}, "resourcetype": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "pid": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "doi", "classname": "doi", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "10.1016/j.nicl.2015.11.006"}, {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "arXiv", "classname": "arXiv", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "arXivSampleID"} ,{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "pmc", "classname": "pmc", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "pmcsampleid"}], "contributor": [], "resulttype": {"classid": "publication", "classname": "publication", "schemename": "dnet:result_typologies", "schemeid": "dnet:result_typologies"}, "relevantdate": [], "collectedfrom": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "BASE (Open Access Aggregator)", "key": "10|openaire____::df45502607927471ecf8a6ae83683ff5"}], "id": "50|base_oa_____::0968af610a356656706657e4f234b340", "subject": [], "instance": [{"refereed": null, "hostedby": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "NeuroImage: Clinical", "key": "10|doajarticles::0c0e74daa5d95504eade9c81ebbd5b8a"}, "processingchargeamount": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "license": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "http://creativecommons.org/licenses/by-nc-nd/4.0/"}, "url": ["http://dx.doi.org/10.1016/j.nicl.2015.11.006"], "distributionlocation": "", "processingchargecurrency": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2016-01-01"}, "collectedfrom": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "BASE (Open Access Aggregator)", "key": "10|openaire____::df45502607927471ecf8a6ae83683ff5"}, "accessright": {"classid": "OPEN", "classname": "Open Access", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "instancetype": {"classid": "0001", "classname": "Article", "schemename": "dnet:publication_resource", "schemeid": "dnet:publication_resource"}}], "embargoenddate": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "lastupdatetimestamp": 0, "author": [{"surname": "Zeuner", "name": "Kirsten E.", "pid": [], "rank": 1, "affiliation": [], "fullname": "Zeuner, Kirsten E."}, {"surname": "Knutzen", "name": "Arne", "pid": [], "rank": 2, "affiliation": [], "fullname": "Knutzen, Arne"}, {"surname": "Granert", "name": "Oliver", "pid": [{"qualifier": {"classid": "ORCID", "classname": "ORCID"}, "value": "0000-0002-0656-1023"}], "rank": 3, "affiliation": [], "fullname": "Granert, Oliver"}, {"surname": "Sablowsky", "name": "Simone", "pid": [], "rank": 4, "affiliation": [], "fullname": "Sablowsky, Simone"}, {"surname": "Go\\u0308tz", "name": "Julia", "pid": [], "rank": 5, "affiliation": [], "fullname": "G\\u00f6tz, Julia"}, {"surname": "Wolff", "name": "Stephan", "pid": [], "rank": 6, "affiliation": [], "fullname": "Wolff, Stephan"}, {"surname": "Jansen", "name": "Olav", "pid": [], "rank": 7, "affiliation": [], "fullname": "Jansen, Olav"}, {"surname": "Dressler", "name": "Dirk", "pid": [], "rank": 8, "affiliation": [], "fullname": "Dressler, Dirk"}, {"surname": "Schneider", "name": "Susanne A.", "pid": [], "rank": 9, "affiliation": [], "fullname": "Schneider, Susanne A."}, {"surname": "Klein", "name": "Christine", "pid": [], "rank": 10, "affiliation": [], "fullname": "Klein, Christine"}, {"surname": "Deuschl", "name": "Gu\\u0308nther", "pid": [], "rank": 11, "affiliation": [], "fullname": "Deuschl, G\\u00fcnther"}, {"surname": "Eimeren", "name": "Thilo", "pid": [], "rank": 12, "affiliation": [], "fullname": "van Eimeren, Thilo"}, {"surname": "Witt", "name": "Karsten", "pid": [], "rank": 13, "affiliation": [], "fullname": "Witt, Karsten"}], "source": [], "dateofcollection": "2017-07-27T19:04:09.131Z", "fulltext": [], "dateoftransformation": "2019-01-23T10:15:19.582Z", "description": [], "format": [], "journal": {"issnPrinted": "2213-1582", "conferencedate": "", "conferenceplace": "", "name": "NeuroImage: Clinical", "edition": "", "iss": "", "sp": "63", "vol": "10", "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "issnOnline": "", "ep": "70", "issnLinking": ""}, "coverage": [], "publisher": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "Elsevier BV"}, "language": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "bestaccessright": {"classid": "OPEN", "classname": "Open Access", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "country": [{"classid": "IT", "classname": "Italy", "schemeid": "dnet:countries", "schemename": "dnet:countries"}], "extraInfo": [], "originalId": ["10.1016/j.nicl.2015.11.006"], "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2016-01-01"}, "title": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "main title", "classname": "main title", "schemename": "dnet:dataCite_title", "schemeid": "dnet:dataCite_title"}, "value": "Altered brain activation in a reversal learning task unmasks adaptive changes in cognitive control in writer's cramp"}]} +{"context": [], "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "sysimport:crosswalk:datasetarchive", "classname": "sysimport:crosswalk:datasetarchive", "schemename": "dnet:provenanceActions", "schemeid": "dnet:provenanceActions"}, "inferred": true, "inferenceprovenance": "dedup-similarity-result-levenstein", "invisible": false, "trust": "0.9"}, "resourcetype": {"classid": "0004", "classname": "Conference object", "schemename": "dnet:dataCite_resource", "schemeid": "dnet:dataCite_resource"}, "pid": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "arXiv", "classname": "arXiv", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "arXivSampleID"} ,{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "doi", "classname": "doi", "schemename": "dnet:pid_types", "schemeid": "dnet:pid_types"}, "value": "10.0001/doi2"}], "contributor": [], "resulttype": {"classid": "publication", "classname": "publication", "schemename": "dnet:result_typologies", "schemeid": "dnet:result_typologies"}, "relevantdate": [], "collectedfrom": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "CRIS UNS (Current Research Information System University of Novi Sad)", "key": "10|CRIS_UNS____::f66f1bd369679b5b077dcdf006089556"}], "id": "50|CrisUnsNoviS::9f9d014eea45dab432cab636c4c9cf39", "subject": [], "instance": [{"refereed": null, "hostedby": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "CRIS UNS (Current Research Information System University of Novi Sad)", "key": "10|CRIS_UNS____::f66f1bd369679b5b077dcdf006089556"}, "processingchargeamount": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "license": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "url": ["https://www.cris.uns.ac.rs/record.jsf?recordId=113444&source=OpenAIRE&language=en"], "distributionlocation": "", "processingchargecurrency": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2019-01-01"}, "collectedfrom": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "CRIS UNS (Current Research Information System University of Novi Sad)", "key": "10|CRIS_UNS____::f66f1bd369679b5b077dcdf006089556"}, "accessright": {"classid": "UNKNOWN", "classname": "UNKNOWN", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "instancetype": {"classid": "0004", "classname": "Conference object", "schemename": "dnet:dataCite_resource", "schemeid": "dnet:dataCite_resource"}}], "embargoenddate": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "lastupdatetimestamp": 0, "author": [{"surname": "Zeuner", "name": "Kirsten E.", "pid": [], "rank": 1, "affiliation": [], "fullname": "Zeuner, Kirsten E."}, {"surname": "Knutzen", "name": "Arne", "pid": [], "rank": 2, "affiliation": [], "fullname": "Knutzen, Arne"}, {"surname": "Granert", "name": "Oliver", "pid": [{"qualifier": {"classid": "ORCID", "classname": "ORCID"}, "value": "0000-0002-0656-1023"}, {"qualifier": {"classid": "pubmed", "classname": "pubmed"}, "value": "pubmed.it"}], "rank": 3, "affiliation": [], "fullname": "Granert, Oliver"}, {"surname": "Sablowsky", "name": "Simone", "pid": [{"qualifier": {"classid": "id", "classname": "id"}, "value": "12345678"}], "rank": 4, "affiliation": [], "fullname": "Sablowsky, Simone"}, {"surname": "Go\\u0308tz", "name": "Julia", "pid": [], "rank": 5, "affiliation": [], "fullname": "G\\u00f6tz, Julia"}, {"surname": "Wolff", "name": "Stephan", "pid": [], "rank": 6, "affiliation": [], "fullname": "Wolff, Stephan"}, {"surname": "Jansen", "name": "Olav", "pid": [{"qualifier": {"classid": "ORCID", "classname": "ORCID"}, "value": "0000-0000-0656-1023"},{"qualifier": {"classid": "id", "classname": "id"}, "value": "987654321"}], "rank": 7, "affiliation": [], "fullname": "Jansen, Olav"}, {"surname": "Dressler", "name": "Dirk", "pid": [], "rank": 8, "affiliation": [], "fullname": "Dressler, Dirk"}, {"surname": "Schneider", "name": "Susanne A.", "pid": [], "rank": 9, "affiliation": [], "fullname": "Schneider, Susanne A."}], "source": [], "dateofcollection": "2020-03-10T15:05:38.685Z", "fulltext": [], "dateoftransformation": "2020-03-11T20:11:13.15Z", "description": [], "format": [], "journal": {"issnPrinted": "", "conferencedate": "", "conferenceplace": "", "name": "", "edition": "", "iss": "", "sp": "", "vol": "", "dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "issnOnline": "", "ep": "", "issnLinking": ""}, "coverage": [], "publisher": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": ""}, "language": {"classid": "en", "classname": "en", "schemename": "dnet:languages", "schemeid": "dnet:languages"}, "bestaccessright": {"classid": "UNKNOWN", "classname": "not available", "schemename": "dnet:access_modes", "schemeid": "dnet:access_modes"}, "country": [{"classid": "FI", "classname": "Finland", "schemeid": "dnet:countries", "schemename": "dnet:countries"}], "extraInfo": [], "originalId": ["(BISIS)113444", "https://www.cris.uns.ac.rs/record.jsf?recordId=113444&source=OpenAIRE&language=en"], "dateofacceptance": {"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "value": "2016-01-01"}, "title": [{"dataInfo": {"deletedbyinference": false, "provenanceaction": {"classid": "", "classname": "", "schemename": "", "schemeid": ""}, "inferred": false, "inferenceprovenance": "", "invisible": false, "trust": ""}, "qualifier": {"classid": "test title", "classname": "test title", "schemename": "dnet:dataCite_title", "schemeid": "dnet:dataCite_title"}, "value": "Antichains of copies of ultrahomogeneous structures"}]} \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge3.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge3.json new file mode 100644 index 000000000..c82c8c83e --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge3.json @@ -0,0 +1,3 @@ +{"id":"50|doajarticles::842fa3b99fcdccafb4d5c8a815f56efa","dateofcollection":"2020-04-06T12:22:31.216Z","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.5213/inj.1632552.276"}, {"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.5213/inj.1632552.27XXXXX"}],"author":[{"affiliation":null,"fullname":"Seok Joong Yun","name":null,"pid":[],"rank":1,"surname":null},{"affiliation":null,"fullname":"Pildu Jeong","name":null,"pid":[],"rank":2,"surname":null},{"affiliation":null,"fullname":"Ho Won Kang","name":null,"pid":[],"rank":3,"surname":null},{"affiliation":null,"fullname":"Helen Ki Shinn","name":null,"pid":[],"rank":4,"surname":null},{"affiliation":null,"fullname":"Ye-Hwan Kim","name":null,"pid":[],"rank":5,"surname":null},{"affiliation":null,"fullname":"Chunri Yan","name":null,"pid":[],"rank":6,"surname":null},{"affiliation":null,"fullname":"Young-Ki Choi","name":null,"pid":[],"rank":7,"surname":null},{"affiliation":null,"fullname":"Dongho Kim","name":null,"pid":[],"rank":8,"surname":null},{"affiliation":null,"fullname":"Dong Hee Ryu","name":null,"pid":[],"rank":9,"surname":null},{"affiliation":null,"fullname":"Yun-Sok Ha","name":null,"pid":[],"rank":10,"surname":null},{"affiliation":null,"fullname":"Tae-Hwan Kim","name":null,"pid":[],"rank":11,"surname":null},{"affiliation":null,"fullname":"Tae Gyun Kwon","name":null,"pid":[],"rank":12,"surname":null},{"affiliation":null,"fullname":"Jung Min Kim","name":null,"pid":[],"rank":13,"surname":null},{"affiliation":null,"fullname":"Sang Heon Suh","name":null,"pid":[],"rank":14,"surname":null},{"affiliation":null,"fullname":"Seon-Kyu Kim","name":null,"pid":[],"rank":15,"surname":null},{"affiliation":null,"fullname":"Seon-Young Kim","name":null,"pid":[],"rank":16,"surname":null},{"affiliation":null,"fullname":"Sang Tae Kim","name":null,"pid":[],"rank":17,"surname":null},{"affiliation":null,"fullname":"Won Tae Kim","name":null,"pid":[],"rank":18,"surname":null},{"affiliation":null,"fullname":"Ok-Jun Lee","name":null,"pid":[],"rank":19,"surname":null},{"affiliation":null,"fullname":"Sung-Kwon Moon","name":null,"pid":[],"rank":20,"surname":null},{"affiliation":null,"fullname":"Nam-Hyung Kim","name":null,"pid":[],"rank":21,"surname":null},{"affiliation":null,"fullname":"Isaac Yi Kim","name":null,"pid":[],"rank":22,"surname":null},{"affiliation":null,"fullname":"Jayoung Kim","name":null,"pid":[],"rank":23,"surname":null},{"affiliation":null,"fullname":"Hee-Jae Cha","name":null,"pid":[],"rank":24,"surname":null},{"affiliation":null,"fullname":"Yung-Hyun Choi","name":null,"pid":[],"rank":25,"surname":null},{"affiliation":null,"fullname":"Eun-Jong Cha","name":null,"pid":[],"rank":26,"surname":null},{"affiliation":null,"fullname":"Wun-Jae Kim","name":null,"pid":[],"rank":27,"surname":null}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Diseases of the genitourinary system. Urology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"RC870-923"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|doajarticles::52db9a4f8e176f6e8e1d9f0c1e0a2de0","value":"International Neurourology Journal"},"instancetype":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://www.einj.org/upload/pdf/inj-1632552-276.pdf","https://doaj.org/toc/2093-4777","https://doaj.org/toc/2093-6931"]}]} +{"id":"50|od_______267::b5f5da11a8239ef57655cea8675cb466","dateofcollection":"","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed Central"}],"pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.5213/inj.1632552.276"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"pmc","classname":"pmc","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"PMC4932644"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"pmid","classname":"pmid","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"27377944"}],"author":[{"affiliation":null,"fullname":"Yun, Seok Joong","name":"Seok Joong","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-7737-4746"}],"rank":1,"surname":"Yun"},{"affiliation":null,"fullname":"Jeong, Pildu","name":"Pildu","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-5602-5376"}],"rank":2,"surname":"Jeong"},{"affiliation":null,"fullname":"Kang, Ho Won","name":"Ho Won","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8164-4427"}],"rank":3,"surname":"Kang"},{"affiliation":null,"fullname":"Shinn, Helen Ki","name":"Helen Ki","pid":[],"rank":4,"surname":"Shinn"},{"affiliation":null,"fullname":"Kim, Ye-Hwan","name":"Ye-Hwan","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8676-7119"}],"rank":5,"surname":"Kim"},{"affiliation":null,"fullname":"Yan, Chunri","name":"Chunri","pid":[],"rank":6,"surname":"Yan"},{"affiliation":null,"fullname":"Choi, Young-Ki","name":"Young-Ki","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1894-9869"}],"rank":7,"surname":"Choi"},{"affiliation":null,"fullname":"Kim, Dongho","name":"Dongho","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1409-3311"}],"rank":8,"surname":"Kim"},{"affiliation":null,"fullname":"Ryu, Dong Hee","name":"Dong Hee","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-6088-298X"}],"rank":9,"surname":"Ryu"},{"affiliation":null,"fullname":"Ha, Yun-Sok","name":"Yun-Sok","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0003-3732-9814"}],"rank":10,"surname":"Ha"},{"affiliation":null,"fullname":"Kim, Tae-Hwan","name":"Tae-Hwan","pid":[],"rank":11,"surname":"Kim"},{"affiliation":null,"fullname":"Kwon, Tae Gyun","name":"Tae Gyun","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-4390-0952"}],"rank":12,"surname":"Kwon"},{"affiliation":null,"fullname":"Kim, Jung Min","name":"Jung Min","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-6319-0217"}],"rank":13,"surname":"Kim"},{"affiliation":null,"fullname":"Suh, Sang Heon","name":"Sang Heon","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0003-4560-8880"}],"rank":14,"surname":"Suh"},{"affiliation":null,"fullname":"Kim, Seon-Kyu","name":"Seon-Kyu","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-4176-5187"}],"rank":15,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Seon-Young","name":"Seon-Young","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1030-7730"}],"rank":16,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Sang Tae","name":"Sang Tae","pid":[],"rank":17,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Won Tae","name":"Won Tae","pid":[],"rank":18,"surname":"Kim"},{"affiliation":null,"fullname":"Lee, Ok-Jun","name":"Ok-Jun","pid":[],"rank":19,"surname":"Lee"},{"affiliation":null,"fullname":"Moon, Sung-Kwon","name":"Sung-Kwon","pid":[],"rank":20,"surname":"Moon"},{"affiliation":null,"fullname":"Kim, Nam-Hyung","name":"Nam-Hyung","pid":[],"rank":21,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Isaac Yi","name":"Isaac Yi","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1967-5281"}],"rank":22,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Jayoung","name":"Jayoung","pid":[],"rank":23,"surname":"Kim"},{"affiliation":null,"fullname":"Cha, Hee-Jae","name":"Hee-Jae","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-6963-2685"}],"rank":24,"surname":"Cha"},{"affiliation":null,"fullname":"Choi, Yung-Hyun","name":"Yung-Hyun","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1454-3124"}],"rank":25,"surname":"Choi"},{"affiliation":null,"fullname":"Cha, Eun-Jong","name":"Eun-Jong","pid":[],"rank":26,"surname":"Cha"},{"affiliation":null,"fullname":"Kim, Wun-Jae","name":"Wun-Jae","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8060-8926"}],"rank":27,"surname":"Kim"}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Original Article"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Fundamental Science for Neurourology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed Central"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c","value":"Europe PubMed Central"},"instancetype":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://europepmc.org/articles/PMC4932644"]}]} +{"id":"50|doiboost____::0ca46ff10b2b4c756191719d85302b14","dateofcollection":"2019-02-15","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::8ac8380272269217cb09a928c8caa993","value":"UnpayWall"}],"pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.5213/inj.1632552.276"}],"author":[{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Seok Joong Yun","name":"Seok Joong","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2105974574"}],"rank":1,"surname":"Yun"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Pildu Jeong","name":"Pildu","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2041919263"}],"rank":2,"surname":"Jeong"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ho Won Kang","name":"Ho Won","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2164408067"}],"rank":3,"surname":"Kang"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Inha University"}],"fullname":"Helen Ki Shinn","name":"Helen Ki","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2045077081"}],"rank":4,"surname":"Shinn"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ye-Hwan Kim","name":"Ye-Hwan","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2276303457"}],"rank":5,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Chunri Yan","name":"Chunri","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2186750404"}],"rank":6,"surname":"Yan"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Young-Ki Choi","name":"Young-Ki","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2311466124"}],"rank":7,"surname":"Choi"},{"affiliation":[],"fullname":"Dongho Kim","name":"Dongho","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2644843893"}],"rank":8,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Dong Hee Ryu","name":"Dong Hee","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2117604941"}],"rank":9,"surname":"Ryu"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Yun-Sok Ha","name":"Yun-Sok","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2145233282"}],"rank":10,"surname":"Ha"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Tae-Hwan Kim","name":"Tae-Hwan","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2509096378"}],"rank":11,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Tae Gyun Kwon","name":"Tae Gyun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"1978978081"}],"rank":12,"surname":"Kwon"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Daejeon University"}],"fullname":"Jung Min Kim","name":"Jung Min","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2265841962"}],"rank":13,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"KAIST"}],"fullname":"Sang Heon Suh","name":"Sang Heon","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2890693470"}],"rank":14,"surname":"Suh"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korea Research Institute of Bioscience and Biotechnology"}],"fullname":"Seon-Kyu Kim","name":"Seon-Kyu","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2162364977"}],"rank":15,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korea Research Institute of Bioscience and Biotechnology"}],"fullname":"Seon-Young Kim","name":"Seon-Young","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2344797375"}],"rank":16,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Seoul National University Bundang Hospital"}],"fullname":"Sang Tae Kim","name":"Sang Tae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2257827509"}],"rank":17,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Won Tae Kim","name":"Won Tae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2617237649"}],"rank":18,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ok-Jun Lee","name":"Ok-Jun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2112231548"}],"rank":19,"surname":"Lee"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chung-Ang University"}],"fullname":"Sung-Kwon Moon","name":"Sung-Kwon","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2796689429"}],"rank":20,"surname":"Moon"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Nam-Hyung Kim","name":"Nam-Hyung","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2136287741"}],"rank":21,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Rutgers University"}],"fullname":"Isaac Yi Kim","name":"Isaac Yi","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2015295992"}],"rank":22,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Harvard University"}],"fullname":"Jayoung Kim","name":"Jayoung","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2130848131"}],"rank":23,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kosin University"}],"fullname":"Hee-Jae Cha","name":"Hee-Jae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2113489867"}],"rank":24,"surname":"Cha"},{"affiliation":[],"fullname":"Yung-Hyun Choi","name":"Yung-Hyun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2151282194"}],"rank":25,"surname":"Choi"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Eun-Jong Cha","name":"Eun-Jong","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2109572239"}],"rank":26,"surname":"Cha"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Wun-Jae Kim","name":"Wun-Jae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2113339670"}],"rank":27,"surname":"Kim"}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"und","classname":"Undetermined","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Purpose:"}],"dateofacceptance":null,"embargoenddate":null,"resourcetype":null,"context":null,"instance":null} \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge4.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge4.json new file mode 100644 index 000000000..785465ae9 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge4.json @@ -0,0 +1,3 @@ +{"id":"50|doajarticles::842fa3b99fcdccafb4d5c8a815f56efa","dateofcollection":"2020-04-06T12:22:31.216Z","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"pid":[],"author":[{"affiliation":null,"fullname":"Seok Joong Yun","name":null,"pid":[],"rank":1,"surname":null},{"affiliation":null,"fullname":"Pildu Jeong","name":null,"pid":[],"rank":2,"surname":null},{"affiliation":null,"fullname":"Ho Won Kang","name":null,"pid":[],"rank":3,"surname":null},{"affiliation":null,"fullname":"Helen Ki Shinn","name":null,"pid":[],"rank":4,"surname":null},{"affiliation":null,"fullname":"Ye-Hwan Kim","name":null,"pid":[],"rank":5,"surname":null},{"affiliation":null,"fullname":"Chunri Yan","name":null,"pid":[],"rank":6,"surname":null},{"affiliation":null,"fullname":"Young-Ki Choi","name":null,"pid":[],"rank":7,"surname":null},{"affiliation":null,"fullname":"Dongho Kim","name":null,"pid":[],"rank":8,"surname":null},{"affiliation":null,"fullname":"Dong Hee Ryu","name":null,"pid":[],"rank":9,"surname":null},{"affiliation":null,"fullname":"Yun-Sok Ha","name":null,"pid":[],"rank":10,"surname":null},{"affiliation":null,"fullname":"Tae-Hwan Kim","name":null,"pid":[],"rank":11,"surname":null},{"affiliation":null,"fullname":"Tae Gyun Kwon","name":null,"pid":[],"rank":12,"surname":null},{"affiliation":null,"fullname":"Jung Min Kim","name":null,"pid":[],"rank":13,"surname":null},{"affiliation":null,"fullname":"Sang Heon Suh","name":null,"pid":[],"rank":14,"surname":null},{"affiliation":null,"fullname":"Seon-Kyu Kim","name":null,"pid":[],"rank":15,"surname":null},{"affiliation":null,"fullname":"Seon-Young Kim","name":null,"pid":[],"rank":16,"surname":null},{"affiliation":null,"fullname":"Sang Tae Kim","name":null,"pid":[],"rank":17,"surname":null},{"affiliation":null,"fullname":"Won Tae Kim","name":null,"pid":[],"rank":18,"surname":null},{"affiliation":null,"fullname":"Ok-Jun Lee","name":null,"pid":[],"rank":19,"surname":null},{"affiliation":null,"fullname":"Sung-Kwon Moon","name":null,"pid":[],"rank":20,"surname":null},{"affiliation":null,"fullname":"Nam-Hyung Kim","name":null,"pid":[],"rank":21,"surname":null},{"affiliation":null,"fullname":"Isaac Yi Kim","name":null,"pid":[],"rank":22,"surname":null},{"affiliation":null,"fullname":"Jayoung Kim","name":null,"pid":[],"rank":23,"surname":null},{"affiliation":null,"fullname":"Hee-Jae Cha","name":null,"pid":[],"rank":24,"surname":null},{"affiliation":null,"fullname":"Yung-Hyun Choi","name":null,"pid":[],"rank":25,"surname":null},{"affiliation":null,"fullname":"Eun-Jong Cha","name":null,"pid":[],"rank":26,"surname":null},{"affiliation":null,"fullname":"Wun-Jae Kim","name":null,"pid":[],"rank":27,"surname":null}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Diseases of the genitourinary system. Urology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"RC870-923"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|doajarticles::52db9a4f8e176f6e8e1d9f0c1e0a2de0","value":"International Neurourology Journal"},"instancetype":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://www.einj.org/upload/pdf/inj-1632552-276.pdf","https://doaj.org/toc/2093-4777","https://doaj.org/toc/2093-6931"]}]} +{"id":"50|od_______267::b5f5da11a8239ef57655cea8675cb466","dateofcollection":"","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed Central"}],"pid":[],"author":[{"affiliation":null,"fullname":"Yun, Seok Joong","name":"Seok Joong","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-7737-4746"}],"rank":1,"surname":"Yun"},{"affiliation":null,"fullname":"Jeong, Pildu","name":"Pildu","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-5602-5376"}],"rank":2,"surname":"Jeong"},{"affiliation":null,"fullname":"Kang, Ho Won","name":"Ho Won","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8164-4427"}],"rank":3,"surname":"Kang"},{"affiliation":null,"fullname":"Shinn, Helen Ki","name":"Helen Ki","pid":[],"rank":4,"surname":"Shinn"},{"affiliation":null,"fullname":"Kim, Ye-Hwan","name":"Ye-Hwan","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8676-7119"}],"rank":5,"surname":"Kim"},{"affiliation":null,"fullname":"Yan, Chunri","name":"Chunri","pid":[],"rank":6,"surname":"Yan"},{"affiliation":null,"fullname":"Choi, Young-Ki","name":"Young-Ki","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1894-9869"}],"rank":7,"surname":"Choi"},{"affiliation":null,"fullname":"Kim, Dongho","name":"Dongho","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1409-3311"}],"rank":8,"surname":"Kim"},{"affiliation":null,"fullname":"Ryu, Dong Hee","name":"Dong Hee","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-6088-298X"}],"rank":9,"surname":"Ryu"},{"affiliation":null,"fullname":"Ha, Yun-Sok","name":"Yun-Sok","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0003-3732-9814"}],"rank":10,"surname":"Ha"},{"affiliation":null,"fullname":"Kim, Tae-Hwan","name":"Tae-Hwan","pid":[],"rank":11,"surname":"Kim"},{"affiliation":null,"fullname":"Kwon, Tae Gyun","name":"Tae Gyun","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-4390-0952"}],"rank":12,"surname":"Kwon"},{"affiliation":null,"fullname":"Kim, Jung Min","name":"Jung Min","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-6319-0217"}],"rank":13,"surname":"Kim"},{"affiliation":null,"fullname":"Suh, Sang Heon","name":"Sang Heon","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0003-4560-8880"}],"rank":14,"surname":"Suh"},{"affiliation":null,"fullname":"Kim, Seon-Kyu","name":"Seon-Kyu","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-4176-5187"}],"rank":15,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Seon-Young","name":"Seon-Young","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1030-7730"}],"rank":16,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Sang Tae","name":"Sang Tae","pid":[],"rank":17,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Won Tae","name":"Won Tae","pid":[],"rank":18,"surname":"Kim"},{"affiliation":null,"fullname":"Lee, Ok-Jun","name":"Ok-Jun","pid":[],"rank":19,"surname":"Lee"},{"affiliation":null,"fullname":"Moon, Sung-Kwon","name":"Sung-Kwon","pid":[],"rank":20,"surname":"Moon"},{"affiliation":null,"fullname":"Kim, Nam-Hyung","name":"Nam-Hyung","pid":[],"rank":21,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Isaac Yi","name":"Isaac Yi","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1967-5281"}],"rank":22,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Jayoung","name":"Jayoung","pid":[],"rank":23,"surname":"Kim"},{"affiliation":null,"fullname":"Cha, Hee-Jae","name":"Hee-Jae","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-6963-2685"}],"rank":24,"surname":"Cha"},{"affiliation":null,"fullname":"Choi, Yung-Hyun","name":"Yung-Hyun","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1454-3124"}],"rank":25,"surname":"Choi"},{"affiliation":null,"fullname":"Cha, Eun-Jong","name":"Eun-Jong","pid":[],"rank":26,"surname":"Cha"},{"affiliation":null,"fullname":"Kim, Wun-Jae","name":"Wun-Jae","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8060-8926"}],"rank":27,"surname":"Kim"}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Original Article"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Fundamental Science for Neurourology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed Central"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c","value":"Europe PubMed Central"},"instancetype":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://europepmc.org/articles/PMC4932644"]}]} +{"id":"50|doiboost____::0ca46ff10b2b4c756191719d85302b14","dateofcollection":"2019-02-15","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::8ac8380272269217cb09a928c8caa993","value":"UnpayWall"}],"pid":[],"author":[{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Seok Joong Yun","name":"Seok Joong","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2105974574"}],"rank":1,"surname":"Yun"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Pildu Jeong","name":"Pildu","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2041919263"}],"rank":2,"surname":"Jeong"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ho Won Kang","name":"Ho Won","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2164408067"}],"rank":3,"surname":"Kang"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Inha University"}],"fullname":"Helen Ki Shinn","name":"Helen Ki","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2045077081"}],"rank":4,"surname":"Shinn"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ye-Hwan Kim","name":"Ye-Hwan","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2276303457"}],"rank":5,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Chunri Yan","name":"Chunri","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2186750404"}],"rank":6,"surname":"Yan"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Young-Ki Choi","name":"Young-Ki","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2311466124"}],"rank":7,"surname":"Choi"},{"affiliation":[],"fullname":"Dongho Kim","name":"Dongho","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2644843893"}],"rank":8,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Dong Hee Ryu","name":"Dong Hee","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2117604941"}],"rank":9,"surname":"Ryu"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Yun-Sok Ha","name":"Yun-Sok","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2145233282"}],"rank":10,"surname":"Ha"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Tae-Hwan Kim","name":"Tae-Hwan","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2509096378"}],"rank":11,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Tae Gyun Kwon","name":"Tae Gyun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"1978978081"}],"rank":12,"surname":"Kwon"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Daejeon University"}],"fullname":"Jung Min Kim","name":"Jung Min","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2265841962"}],"rank":13,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"KAIST"}],"fullname":"Sang Heon Suh","name":"Sang Heon","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2890693470"}],"rank":14,"surname":"Suh"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korea Research Institute of Bioscience and Biotechnology"}],"fullname":"Seon-Kyu Kim","name":"Seon-Kyu","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2162364977"}],"rank":15,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korea Research Institute of Bioscience and Biotechnology"}],"fullname":"Seon-Young Kim","name":"Seon-Young","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2344797375"}],"rank":16,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Seoul National University Bundang Hospital"}],"fullname":"Sang Tae Kim","name":"Sang Tae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2257827509"}],"rank":17,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Won Tae Kim","name":"Won Tae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2617237649"}],"rank":18,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ok-Jun Lee","name":"Ok-Jun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2112231548"}],"rank":19,"surname":"Lee"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chung-Ang University"}],"fullname":"Sung-Kwon Moon","name":"Sung-Kwon","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2796689429"}],"rank":20,"surname":"Moon"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Nam-Hyung Kim","name":"Nam-Hyung","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2136287741"}],"rank":21,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Rutgers University"}],"fullname":"Isaac Yi Kim","name":"Isaac Yi","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2015295992"}],"rank":22,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Harvard University"}],"fullname":"Jayoung Kim","name":"Jayoung","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2130848131"}],"rank":23,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kosin University"}],"fullname":"Hee-Jae Cha","name":"Hee-Jae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2113489867"}],"rank":24,"surname":"Cha"},{"affiliation":[],"fullname":"Yung-Hyun Choi","name":"Yung-Hyun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2151282194"}],"rank":25,"surname":"Choi"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Eun-Jong Cha","name":"Eun-Jong","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2109572239"}],"rank":26,"surname":"Cha"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Wun-Jae Kim","name":"Wun-Jae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2113339670"}],"rank":27,"surname":"Kim"}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"und","classname":"Undetermined","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Purpose:"}],"dateofacceptance":null,"embargoenddate":null,"resourcetype":null,"context":null,"instance":null} \ No newline at end of file diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge5.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge5.json new file mode 100644 index 000000000..416b75a9b --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge5.json @@ -0,0 +1,3 @@ +{"id":"50|doajarticles::842fa3b99fcdccafb4d5c8a815f56efa","dateofcollection":"2020-04-06T12:22:31.216Z","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"pid":[],"author":[{"affiliation":null,"fullname":"Seok Joong Yun","name":null,"pid":[],"rank":1,"surname":null},{"affiliation":null,"fullname":"Pildu Jeong","name":null,"pid":[],"rank":2,"surname":null},{"affiliation":null,"fullname":"Ho Won Kang","name":null,"pid":[],"rank":3,"surname":null},{"affiliation":null,"fullname":"Helen Ki Shinn","name":null,"pid":[],"rank":4,"surname":null},{"affiliation":null,"fullname":"Ye-Hwan Kim","name":null,"pid":[],"rank":5,"surname":null},{"affiliation":null,"fullname":"Chunri Yan","name":null,"pid":[],"rank":6,"surname":null},{"affiliation":null,"fullname":"Young-Ki Choi","name":null,"pid":[],"rank":7,"surname":null},{"affiliation":null,"fullname":"Dongho Kim","name":null,"pid":[],"rank":8,"surname":null},{"affiliation":null,"fullname":"Dong Hee Ryu","name":null,"pid":[],"rank":9,"surname":null},{"affiliation":null,"fullname":"Yun-Sok Ha","name":null,"pid":[],"rank":10,"surname":null},{"affiliation":null,"fullname":"Tae-Hwan Kim","name":null,"pid":[],"rank":11,"surname":null},{"affiliation":null,"fullname":"Tae Gyun Kwon","name":null,"pid":[],"rank":12,"surname":null},{"affiliation":null,"fullname":"Jung Min Kim","name":null,"pid":[],"rank":13,"surname":null},{"affiliation":null,"fullname":"Sang Heon Suh","name":null,"pid":[],"rank":14,"surname":null},{"affiliation":null,"fullname":"Seon-Kyu Kim","name":null,"pid":[],"rank":15,"surname":null},{"affiliation":null,"fullname":"Seon-Young Kim","name":null,"pid":[],"rank":16,"surname":null},{"affiliation":null,"fullname":"Sang Tae Kim","name":null,"pid":[],"rank":17,"surname":null},{"affiliation":null,"fullname":"Won Tae Kim","name":null,"pid":[],"rank":18,"surname":null},{"affiliation":null,"fullname":"Ok-Jun Lee","name":null,"pid":[],"rank":19,"surname":null},{"affiliation":null,"fullname":"Sung-Kwon Moon","name":null,"pid":[],"rank":20,"surname":null},{"affiliation":null,"fullname":"Nam-Hyung Kim","name":null,"pid":[],"rank":21,"surname":null},{"affiliation":null,"fullname":"Isaac Yi Kim","name":null,"pid":[],"rank":22,"surname":null},{"affiliation":null,"fullname":"Jayoung Kim","name":null,"pid":[],"rank":23,"surname":null},{"affiliation":null,"fullname":"Hee-Jae Cha","name":null,"pid":[],"rank":24,"surname":null},{"affiliation":null,"fullname":"Yung-Hyun Choi","name":null,"pid":[],"rank":25,"surname":null},{"affiliation":null,"fullname":"Eun-Jong Cha","name":null,"pid":[],"rank":26,"surname":null},{"affiliation":null,"fullname":"Wun-Jae Kim","name":null,"pid":[],"rank":27,"surname":null}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Diseases of the genitourinary system. Urology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"RC870-923"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|doajarticles::52db9a4f8e176f6e8e1d9f0c1e0a2de0","value":"International Neurourology Journal"},"instancetype":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://www.einj.org/upload/pdf/inj-1632552-276.pdf","https://doaj.org/toc/2093-4777","https://doaj.org/toc/2093-6931"]}]} +{"id":"50|od_______267::b5f5da11a8239ef57655cea8675cb466","dateofcollection":"","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed Central"}],"pid":[],"author":[{"affiliation":null,"fullname":"Yun, Seok Joong","name":"Seok Joong","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-7737-4746"}],"rank":1,"surname":"Yun"},{"affiliation":null,"fullname":"Jeong, Pildu","name":"Pildu","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-5602-5376"}],"rank":2,"surname":"Jeong"},{"affiliation":null,"fullname":"Kang, Ho Won","name":"Ho Won","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8164-4427"}],"rank":3,"surname":"Kang"},{"affiliation":null,"fullname":"Shinn, Helen Ki","name":"Helen Ki","pid":[],"rank":4,"surname":"Shinn"},{"affiliation":null,"fullname":"Kim, Ye-Hwan","name":"Ye-Hwan","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8676-7119"}],"rank":5,"surname":"Kim"},{"affiliation":null,"fullname":"Yan, Chunri","name":"Chunri","pid":[],"rank":6,"surname":"Yan"},{"affiliation":null,"fullname":"Choi, Young-Ki","name":"Young-Ki","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1894-9869"}],"rank":7,"surname":"Choi"},{"affiliation":null,"fullname":"Kim, Dongho","name":"Dongho","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1409-3311"}],"rank":8,"surname":"Kim"},{"affiliation":null,"fullname":"Ryu, Dong Hee","name":"Dong Hee","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-6088-298X"}],"rank":9,"surname":"Ryu"},{"affiliation":null,"fullname":"Ha, Yun-Sok","name":"Yun-Sok","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0003-3732-9814"}],"rank":10,"surname":"Ha"},{"affiliation":null,"fullname":"Kim, Tae-Hwan","name":"Tae-Hwan","pid":[],"rank":11,"surname":"Kim"},{"affiliation":null,"fullname":"Kwon, Tae Gyun","name":"Tae Gyun","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-4390-0952"}],"rank":12,"surname":"Kwon"},{"affiliation":null,"fullname":"Kim, Jung Min","name":"Jung Min","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0001-6319-0217"}],"rank":13,"surname":"Kim"},{"affiliation":null,"fullname":"Suh, Sang Heon","name":"Sang Heon","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0003-4560-8880"}],"rank":14,"surname":"Suh"},{"affiliation":null,"fullname":"Kim, Seon-Kyu","name":"Seon-Kyu","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-4176-5187"}],"rank":15,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Seon-Young","name":"Seon-Young","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1030-7730"}],"rank":16,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Sang Tae","name":"Sang Tae","pid":[],"rank":17,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Won Tae","name":"Won Tae","pid":[],"rank":18,"surname":"Kim"},{"affiliation":null,"fullname":"Lee, Ok-Jun","name":"Ok-Jun","pid":[],"rank":19,"surname":"Lee"},{"affiliation":null,"fullname":"Moon, Sung-Kwon","name":"Sung-Kwon","pid":[],"rank":20,"surname":"Moon"},{"affiliation":null,"fullname":"Kim, Nam-Hyung","name":"Nam-Hyung","pid":[],"rank":21,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Isaac Yi","name":"Isaac Yi","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1967-5281"}],"rank":22,"surname":"Kim"},{"affiliation":null,"fullname":"Kim, Jayoung","name":"Jayoung","pid":[],"rank":23,"surname":"Kim"},{"affiliation":null,"fullname":"Cha, Hee-Jae","name":"Hee-Jae","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-6963-2685"}],"rank":24,"surname":"Cha"},{"affiliation":null,"fullname":"Choi, Yung-Hyun","name":"Yung-Hyun","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-1454-3124"}],"rank":25,"surname":"Choi"},{"affiliation":null,"fullname":"Cha, Eun-Jong","name":"Eun-Jong","pid":[],"rank":26,"surname":"Cha"},{"affiliation":null,"fullname":"Kim, Wun-Jae","name":"Wun-Jae","pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"ORCID","classname":"ORCID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"0000-0002-8060-8926"}],"rank":27,"surname":"Kim"}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Original Article"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Fundamental Science for Neurourology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed Central"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c","value":"Europe PubMed Central"},"instancetype":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://europepmc.org/articles/PMC4932644"]}]} +{"id":"50|doiboost____::0ca46ff10b2b4c756191719d85302b14","dateofcollection":"2019-02-15","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::8ac8380272269217cb09a928c8caa993","value":"UnpayWall"}],"pid":[],"author":[{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Seok Joong Yun","name":"Seok Joong","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2105974574"}],"rank":1,"surname":"Yun"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Pildu Jeong","name":"Pildu","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2041919263"}],"rank":2,"surname":"Jeong"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ho Won Kang","name":"Ho Won","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2164408067"}],"rank":3,"surname":"Kang"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Inha University"}],"fullname":"Helen Ki Shinn","name":"Helen Ki","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2045077081"}],"rank":4,"surname":"Shinn"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ye-Hwan Kim","name":"Ye-Hwan","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2276303457"}],"rank":5,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Chunri Yan","name":"Chunri","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2186750404"}],"rank":6,"surname":"Yan"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Young-Ki Choi","name":"Young-Ki","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2311466124"}],"rank":7,"surname":"Choi"},{"affiliation":[],"fullname":"Dongho Kim","name":"Dongho","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2644843893"}],"rank":8,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Dong Hee Ryu","name":"Dong Hee","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2117604941"}],"rank":9,"surname":"Ryu"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Yun-Sok Ha","name":"Yun-Sok","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2145233282"}],"rank":10,"surname":"Ha"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Tae-Hwan Kim","name":"Tae-Hwan","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2509096378"}],"rank":11,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kyungpook National University"}],"fullname":"Tae Gyun Kwon","name":"Tae Gyun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"1978978081"}],"rank":12,"surname":"Kwon"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Daejeon University"}],"fullname":"Jung Min Kim","name":"Jung Min","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2265841962"}],"rank":13,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"KAIST"}],"fullname":"Sang Heon Suh","name":"Sang Heon","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2890693470"}],"rank":14,"surname":"Suh"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korea Research Institute of Bioscience and Biotechnology"}],"fullname":"Seon-Kyu Kim","name":"Seon-Kyu","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2162364977"}],"rank":15,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korea Research Institute of Bioscience and Biotechnology"}],"fullname":"Seon-Young Kim","name":"Seon-Young","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2344797375"}],"rank":16,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Seoul National University Bundang Hospital"}],"fullname":"Sang Tae Kim","name":"Sang Tae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2257827509"}],"rank":17,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Won Tae Kim","name":"Won Tae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2617237649"}],"rank":18,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Ok-Jun Lee","name":"Ok-Jun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2112231548"}],"rank":19,"surname":"Lee"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chung-Ang University"}],"fullname":"Sung-Kwon Moon","name":"Sung-Kwon","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2796689429"}],"rank":20,"surname":"Moon"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Nam-Hyung Kim","name":"Nam-Hyung","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2136287741"}],"rank":21,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Rutgers University"}],"fullname":"Isaac Yi Kim","name":"Isaac Yi","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2015295992"}],"rank":22,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Harvard University"}],"fullname":"Jayoung Kim","name":"Jayoung","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2130848131"}],"rank":23,"surname":"Kim"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Kosin University"}],"fullname":"Hee-Jae Cha","name":"Hee-Jae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2113489867"}],"rank":24,"surname":"Cha"},{"affiliation":[],"fullname":"Yung-Hyun Choi","name":"Yung-Hyun","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2151282194"}],"rank":25,"surname":"Choi"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Eun-Jong Cha","name":"Eun-Jong","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2109572239"}],"rank":26,"surname":"Cha"},{"affiliation":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Chungbuk National University"}],"fullname":"Wun-Jae Kim","name":"Wun-Jae","pid":[{"dataInfo":null,"qualifier":{"classid":"MAG Identifier","classname":"MAG Identifier","schemeid":null,"schemename":null},"value":"2113339670"}],"rank":27,"surname":"Kim"}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"und","classname":"Undetermined","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Purpose:"}],"dateofacceptance":null,"embargoenddate":null,"resourcetype":null,"context":null,"instance":null} \ No newline at end of file diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java index 788ac09bc..1f5936ac3 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java +++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java @@ -292,9 +292,40 @@ public class MappersTest { assertValidId(d.getCollectedfrom().get(0).getKey()); assertTrue(StringUtils.isNotBlank(d.getTitle().get(0).getValue())); assertEquals(1, d.getAuthor().size()); - assertEquals(0, d.getSubject().size()); + assertEquals(1, d.getSubject().size()); assertEquals(1, d.getInstance().size()); assertEquals(1, d.getPid().size()); + assertNotNull(d.getInstance().get(0).getUrl()); + } + + @Test + void testClaimFromCrossref() throws IOException { + final String xml = IOUtils.toString(getClass().getResourceAsStream("oaf_claim_crossref.xml")); + final List list = new OafToOafMapper(vocs, false).processMdRecord(xml); + + System.out.println("***************"); + System.out.println(new ObjectMapper().writeValueAsString(list)); + System.out.println("***************"); + + final Publication p = (Publication) list.get(0); + assertValidId(p.getId()); + assertValidId(p.getCollectedfrom().get(0).getKey()); + System.out.println(p.getTitle().get(0).getValue()); + assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue())); + } + + @Test + void testODFRecord() throws IOException { + final String xml = IOUtils.toString(getClass().getResourceAsStream("odf_record.xml")); + List list = new OdfToOafMapper(vocs, false).processMdRecord(xml); + System.out.println("***************"); + System.out.println(new ObjectMapper().writeValueAsString(list)); + System.out.println("***************"); + final Dataset p = (Dataset) list.get(0); + assertValidId(p.getId()); + assertValidId(p.getCollectedfrom().get(0).getKey()); + System.out.println(p.getTitle().get(0).getValue()); + assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue())); } private void assertValidId(final String id) { diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_claim_crossref.xml b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_claim_crossref.xml new file mode 100644 index 000000000..8f69a5e2d --- /dev/null +++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_claim_crossref.xml @@ -0,0 +1,68 @@ + + +
+ userclaim___::7f0f7807f17db50e5c2b5c452ccaf06d + userclaim___::7f0f7807f17db50e5c2b5c452ccaf06d + 2020-08-06T07:04:09.62Z + + + + + + 2020-08-06T07:20:57.911Z + openaire____ +
+ + A case report of serious haemolysis in a glucose-6-phosphate dehydrogenase-deficient COVID-19 patient receiving hydroxychloroquine + Maillart, E. + Leemans, S. + Van Noten, H. + Vandergraesen, T. + Mahadeb, B. + Salaouatchi, M. T. + De Bels, D. + Clevenbergh, P. + + http://dx.doi.org/10.1080/23744235.2020.1774644 + + Informa UK Limited + Crossref + Infectious Diseases + Microbiology (medical) + General Immunology and Microbiology + Infectious Diseases + General Medicine + journal-article + 0001 + 2020-06-04 + + UNKNOWN + + + 10.1080/23744235.2020.1774644 + Infectious Diseases + + + + + file%3A%2F%2F%2Fsrv%2Fclaims%2Frecords%2Fpublication%2Fcrossref + + + + + + + false + false + 0.9 + + + + + \ No newline at end of file diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_nakala.xml b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_nakala.xml index 105d0c413..7796e4c37 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_nakala.xml +++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_nakala.xml @@ -1,77 +1,75 @@ + xmlns:oaf="http://namespace.openaire.eu/oaf" + xmlns:oai="http://www.openarchives.org/OAI/2.0/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> - r3f5b9831893::cca7367159bc3ff90cd2f75bf9dc21c4 - oai:nakala.fr:hdl_11280_847e01df - 2020-08-01T00:16:24.742Z + xmlns:dri="http://www.driver-repository.eu/namespace/dri" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance"> + r3f5b9831893::01a497c6c6b44289c52dcdf22b6c0fc0 + oai:nakala.fr:hdl_11280_50f302c6 + 2020-10-03T06:06:52.228Z r3f5b9831893 - oai:nakala.fr:hdl_11280_847e01df - 2020-06-08T01:01:38Z - hdl_11280_2b09fc10 - hdl_11280_c1bc48d0 - hdl_11280_57c8db3a - 2020-08-01T00:31:35.625Z + oai:nakala.fr:hdl_11280_50f302c6 + 2020-09-19T23:56:08Z + hdl_11280_96355742 + hdl_11280_26914437 + hdl_11280_86561837 + 2020-10-19T15:39:52.151Z - 277 - http://hdl.handle.net/11280/847e01df - - http://hdl.handle.net/http://hdl.handle.net/11280/847e01df - - http://nakala.fr/data/11280/847e01df - + http://nakala.fr/data/11280/50f302c6 + 11280/50f302c6 + - DHAAP + Desbrosse, Xavier - - CVP_Notice277-1 place du Docteur Antoine Béclère _PHO02.jpg + + Les rues Stalingrad en France (1945-2013) - - Hôpital Saint-Antoine. Fragment de dalle funéraire trouvée en décembre 1932. Paris (XIIème arr.). Photographie d'Albert Citerne (1876-1970). Plaque de verre, 1932. Département Histoire de l'Architecture et Archéologie de Paris. - Nfa_1146 - Hôpital Saint-Antoine. Fragment de dalle funéraire trouvée en décembre 1932. Paris (XIIème arr.). Photographie d'Albert Citerne (1876-1970). Plaque de verre, 1932. Département Histoire de l'Architecture et Archéologie de Paris. + + Rues – Noms -- France + + + Cette carte appartient à la collection « Guerre froide vue d’en bas » élaborée dans le cadre de l’enquête 2009-2013 du réseau des correspondants départementaux de l’IHTP « La Guerre froide vue d’en bas : 1947-1967 », enquête conduite sous la direction de Philippe Buton Professeur d’Histoire contemporaine à l’Université de Reims, d’Olivier Büttner Ingénieur de Recherche IHTP-CNRS et de Michel Hastings, Professeur de Science politique à l’Institut d’Etudes Politiques de Lille. - Nakala by Huma-Num - + IHTP-CNRS + - DHAAP, Pôle Archéologique + (CNRS), Institut d'Histoire du Temps Présent (IHTP) - Centre National de la Recherche Scientifique - - 1932 + + 2013 - StillImage - - - + Carte + + + France + + - http://hdl.handle.net/11280/847e01df + 11280/50f302c6 + 0025 - OPEN + UNKNOWN und + xmlns:dri="http://www.driver-repository.eu/namespace/dri" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance"> - - https%3A%2F%2Fwww.nakala.fr%2Foai_oa%2F11280%2F8892ab4b - oai:nakala.fr:hdl_11280_847e01df - 2020-06-08T01:01:38Z + + https%3A%2F%2Fwww.nakala.fr%2Foai_oa%2F11280%2F92c4d30b + oai:nakala.fr:hdl_11280_50f302c6 + 2020-09-19T23:56:08Z diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_record.xml b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_record.xml new file mode 100644 index 000000000..e2d51a43d --- /dev/null +++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/odf_record.xml @@ -0,0 +1,102 @@ + + + + r3a507cdacc5::03b31980d9bb3c4609e6005c4a3baba6 + oai:lindat.mff.cuni.cz:11372/LRT-1844 + 2020-09-04T14:36:48.411Z + r3a507cdacc5 + oai:lindat.mff.cuni.cz:11372/LRT-1844 + 2016-12-07T11:10:30Z + hdl_11858_00-097C-0000-0007-710A-A + hdl_11858_00-097C-0000-0007-710B-8 + openaire_data + 2020-09-04T14:39:16.458Z + + + + 11372/LRT-1844 + + http://hdl.handle.net/11372/LRT-1844 + + + + Hercig, Tomáš + + + Brychcín, Tomáš + + + Svoboda, Lukáš + + + Konkol, Michal + + + Steinberger, Josef + + + + Restaurant Reviews CZ ABSA corpus v2 + + University of West Bohemia, Department of Computer Science and Engineering + 2016 + + + European Commission + info:eu-repo/grantAgreement/EC/FP7/630786 + + + + 2016 + 2016-12-07T11:10:30Z + 2016-12-07T11:10:30Z + + corpus + + + + + + Restaurant Reviews CZ ABSA - 2.15k reviews with their related target and category + + The work done is described in the paper: https://doi.org/10.13053/CyS-20-3-2469 + + + 11372/LRT-1844 + 2016-12-07 + 0021 + 2016-01-01 + OPEN + http://creativecommons.org/licenses/by-nc-sa/4.0/ + und + corda_______::630786 + + + + + + + https%3A%2F%2Flindat.mff.cuni.cz%2Frepository%2Foai%2Fopenaire_data + oai:lindat.mff.cuni.cz:11372/LRT-1844 + 2016-12-07T11:10:30Z + + + + + false + false + 0.9 + + + + +