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@ -1,10 +1,14 @@
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package eu.dnetlib.dhp.resulttocommunityfromsemrel;
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import static eu.dnetlib.dhp.PropagationConstant.*;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.QueryInformationSystem;
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import eu.dnetlib.dhp.TypedRow;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.schema.oaf.*;
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import java.util.*;
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import java.util.stream.Collectors;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.spark.SparkConf;
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@ -16,28 +20,25 @@ import org.apache.spark.sql.Row;
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import org.apache.spark.sql.SparkSession;
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import scala.Tuple2;
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import java.util.*;
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import java.util.stream.Collectors;
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import static eu.dnetlib.dhp.PropagationConstant.*;
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public class SparkResultToCommunityThroughSemRelJob3 {
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public static void main(String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(IOUtils
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.toString(SparkResultToCommunityThroughSemRelJob3.class
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.getResourceAsStream("/eu/dnetlib/dhp/resulttocommunityfromsemrel/input_propagationresultcommunityfromsemrel_parameters.json")));
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final ArgumentApplicationParser parser =
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new ArgumentApplicationParser(
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IOUtils.toString(
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SparkResultToCommunityThroughSemRelJob3.class.getResourceAsStream(
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"/eu/dnetlib/dhp/resulttocommunityfromsemrel/input_communitytoresult_parameters.json")));
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parser.parseArgument(args);
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SparkConf conf = new SparkConf();
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SparkConf conf = new SparkConf();
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conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
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final SparkSession spark = SparkSession
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.builder()
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.appName(SparkResultToCommunityThroughSemRelJob3.class.getSimpleName())
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.master(parser.get("master"))
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.config(conf)
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.enableHiveSupport()
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.getOrCreate();
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final SparkSession spark =
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SparkSession.builder()
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.appName(SparkResultToCommunityThroughSemRelJob3.class.getSimpleName())
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.master(parser.get("master"))
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.config(conf)
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.enableHiveSupport()
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.getOrCreate();
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final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
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final String inputPath = parser.get("sourcePath");
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@ -45,42 +46,48 @@ public class SparkResultToCommunityThroughSemRelJob3 {
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final List<String> allowedsemrel = Arrays.asList(parser.get("allowedsemrels").split(";"));
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final List<String> communityIdList = QueryInformationSystem.getCommunityList(parser.get("isLookupUrl"));
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final List<String> communityIdList =
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QueryInformationSystem.getCommunityList(parser.get("isLookupUrl"));
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createOutputDirs(outputPath, FileSystem.get(spark.sparkContext().hadoopConfiguration()));
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JavaRDD<Publication> publication_rdd =
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sc.textFile(inputPath + "/publication")
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.map(item -> new ObjectMapper().readValue(item, Publication.class));
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JavaRDD<Publication> publication_rdd = sc.textFile(inputPath + "/publication")
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.map(item -> new ObjectMapper().readValue(item, Publication.class));
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JavaRDD<Dataset> dataset_rdd =
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sc.textFile(inputPath + "/dataset")
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.map(item -> new ObjectMapper().readValue(item, Dataset.class));
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JavaRDD<Dataset> dataset_rdd = sc.textFile(inputPath + "/dataset")
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.map(item -> new ObjectMapper().readValue(item, Dataset.class));
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JavaRDD<OtherResearchProduct> orp_rdd =
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sc.textFile(inputPath + "/otherresearchproduct")
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.map(
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item ->
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new ObjectMapper()
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.readValue(item, OtherResearchProduct.class));
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JavaRDD<OtherResearchProduct> orp_rdd = sc.textFile(inputPath + "/otherresearchproduct")
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.map(item -> new ObjectMapper().readValue(item, OtherResearchProduct.class));
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JavaRDD<Software> software_rdd =
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sc.textFile(inputPath + "/software")
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.map(item -> new ObjectMapper().readValue(item, Software.class));
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JavaRDD<Software> software_rdd = sc.textFile(inputPath + "/software")
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.map(item -> new ObjectMapper().readValue(item, Software.class));
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JavaRDD<Relation> relation_rdd =
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sc.textFile(inputPath + "/relation")
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.map(item -> new ObjectMapper().readValue(item, Relation.class));
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JavaRDD<Relation> relation_rdd = sc.textFile(inputPath + "/relation")
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.map(item -> new ObjectMapper().readValue(item, Relation.class));
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org.apache.spark.sql.Dataset<Publication> publication =
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spark.createDataset(publication_rdd.rdd(), Encoders.bean(Publication.class));
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org.apache.spark.sql.Dataset<Relation> relation =
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spark.createDataset(relation_rdd.rdd(), Encoders.bean(Relation.class));
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org.apache.spark.sql.Dataset<Publication> publication = spark.createDataset(publication_rdd.rdd(),
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Encoders.bean(Publication.class));
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org.apache.spark.sql.Dataset<Dataset> dataset =
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spark.createDataset(dataset_rdd.rdd(), Encoders.bean(Dataset.class));
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org.apache.spark.sql.Dataset<Relation> relation = spark.createDataset(relation_rdd.rdd(),
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Encoders.bean(Relation.class));
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org.apache.spark.sql.Dataset<Dataset> dataset = spark.createDataset(dataset_rdd.rdd(),
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Encoders.bean(Dataset.class));
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org.apache.spark.sql.Dataset<OtherResearchProduct> other = spark.createDataset(orp_rdd.rdd(),
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Encoders.bean(OtherResearchProduct.class));
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org.apache.spark.sql.Dataset<Software> software = spark.createDataset(software_rdd.rdd(),
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Encoders.bean(Software.class));
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org.apache.spark.sql.Dataset<OtherResearchProduct> other =
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spark.createDataset(orp_rdd.rdd(), Encoders.bean(OtherResearchProduct.class));
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org.apache.spark.sql.Dataset<Software> software =
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spark.createDataset(software_rdd.rdd(), Encoders.bean(Software.class));
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publication.createOrReplaceTempView("publication");
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relation.createOrReplaceTempView("relation");
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@ -90,327 +97,490 @@ public class SparkResultToCommunityThroughSemRelJob3 {
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String communitylist = getConstraintList(" co.id = '", communityIdList);
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String semrellist = getConstraintList(" relClass = '", allowedsemrel );
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String semrellist = getConstraintList(" relClass = '", allowedsemrel);
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String query =
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"Select source, community_context, target "
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+ "from (select id, collect_set(co.id) community_context "
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+ "from publication "
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+ "lateral view explode (context) c as co "
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+ "where datainfo.deletedbyinference = false "
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+ communitylist
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+ " group by id) p "
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+ "JOIN "
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+ "(select * "
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+ "from relation "
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+ "where datainfo.deletedbyinference = false "
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+ semrellist
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+ ") r "
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+ "ON p.id = r.source";
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String query = "Select source, community_context, target " +
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"from (select id, collect_set(co.id) community_context " +
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"from publication " +
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"lateral view explode (context) c as co " +
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"where datainfo.deletedbyinference = false "+ communitylist +
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" group by id) p " +
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"JOIN " +
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"(select * " +
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"from relation " +
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"where datainfo.deletedbyinference = false " + semrellist + ") r " +
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"ON p.id = r.source";
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org.apache.spark.sql.Dataset<Row> publication_context = spark.sql( query);
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org.apache.spark.sql.Dataset<Row> publication_context = spark.sql(query);
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publication_context.createOrReplaceTempView("publication_context");
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//( source, (mes, dh-ch-, ni), target )
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query = "select target , collect_set(co) " +
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"from (select target, community_context " +
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"from publication_context pc join publication p on " +
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"p.id = pc.source) tmp " +
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"lateral view explode (community_context) c as co " +
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"group by target";
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// ( source, (mes, dh-ch-, ni), target )
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query =
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"select target , collect_set(co) "
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+ "from (select target, community_context "
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+ "from publication_context pc join publication p on "
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+ "p.id = pc.source) tmp "
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+ "lateral view explode (community_context) c as co "
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+ "group by target";
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org.apache.spark.sql.Dataset<Row> toupdatepublicationreresult = spark.sql(query);
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org.apache.spark.sql.Dataset<Row> toupdatesoftwareresult = getUpdateCommunitiesForTable(spark, "software");
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org.apache.spark.sql.Dataset<Row> toupdatedatasetresult = getUpdateCommunitiesForTable(spark, "dataset");
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org.apache.spark.sql.Dataset<Row> toupdateotherresult = getUpdateCommunitiesForTable(spark, "other");
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org.apache.spark.sql.Dataset<Row> toupdatesoftwareresult =
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getUpdateCommunitiesForTable(spark, "software");
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org.apache.spark.sql.Dataset<Row> toupdatedatasetresult =
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getUpdateCommunitiesForTable(spark, "dataset");
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org.apache.spark.sql.Dataset<Row> toupdateotherresult =
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getUpdateCommunitiesForTable(spark, "other");
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createUpdateForResultDatasetWrite(toupdatesoftwareresult.toJavaRDD(), outputPath, "software_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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createUpdateForResultDatasetWrite(
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toupdatesoftwareresult.toJavaRDD(),
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outputPath,
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"software_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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createUpdateForResultDatasetWrite(toupdatedatasetresult.toJavaRDD(), outputPath, "dataset_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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createUpdateForResultDatasetWrite(
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toupdatedatasetresult.toJavaRDD(),
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outputPath,
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"dataset_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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createUpdateForResultDatasetWrite(toupdatepublicationreresult.toJavaRDD(), outputPath, "publication_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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createUpdateForResultDatasetWrite(
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toupdatepublicationreresult.toJavaRDD(),
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outputPath,
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"publication_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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createUpdateForResultDatasetWrite(toupdateotherresult.toJavaRDD(), outputPath, "other_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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createUpdateForResultDatasetWrite(
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toupdateotherresult.toJavaRDD(),
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outputPath,
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"other_update",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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updateForDatasetDataset(toupdatedatasetresult.toJavaRDD(), dataset.toJavaRDD(), outputPath, "dataset",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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updateForDatasetDataset(
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toupdatedatasetresult.toJavaRDD(),
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dataset.toJavaRDD(),
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outputPath,
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"dataset",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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updateForOtherDataset(toupdateotherresult.toJavaRDD(), other.toJavaRDD(), outputPath, "otherresearchproduct",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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updateForOtherDataset(
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toupdateotherresult.toJavaRDD(),
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other.toJavaRDD(),
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outputPath,
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"otherresearchproduct",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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updateForSoftwareDataset(toupdatesoftwareresult.toJavaRDD(), software.toJavaRDD(), outputPath, "software",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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updateForSoftwareDataset(
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toupdatesoftwareresult.toJavaRDD(),
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software.toJavaRDD(),
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outputPath,
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"software",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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updateForPublicationDataset(toupdatepublicationreresult.toJavaRDD(), publication.toJavaRDD(), outputPath, "publication",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME, communityIdList);
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//
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updateForPublicationDataset(
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toupdatepublicationreresult.toJavaRDD(),
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publication.toJavaRDD(),
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outputPath,
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"publication",
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
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PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
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communityIdList);
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//
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/*
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JavaPairRDD<String, TypedRow> resultLinkedToCommunities = publication
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"publication"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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.union(datasets
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"dataset"))
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/*
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JavaPairRDD<String, TypedRow> resultLinkedToCommunities = publication
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"publication"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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)
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.union(software
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"software"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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)
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.union(other
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"otherresearchproduct"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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);
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.union(datasets
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"dataset"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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)
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.union(software
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"software"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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)
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.union(other
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.map(p -> getTypedRow(communityIdList, p.getContext(), p.getId(),"otherresearchproduct"))
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.filter(p -> !(p == null))
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.mapToPair(toPair())
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);
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JavaPairRDD<String, TypedRow> to_add_result_communities = resultLinkedToCommunities.join(result_result).map(r -> r._2()._1().setSourceId(r._2()._2().getTargetId()))
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.mapToPair(toPair());
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JavaPairRDD<String, TypedRow> to_add_result_communities = resultLinkedToCommunities.join(result_result).map(r -> r._2()._1().setSourceId(r._2()._2().getTargetId()))
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.mapToPair(toPair());
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JavaPairRDD<String, Result> pubs = publications.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> dss = datasets.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> sfw = software.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> orp = other.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> pubs = publications.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> dss = datasets.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> sfw = software.mapToPair(p -> new Tuple2<>(p.getId(),p));
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JavaPairRDD<String, Result> orp = other.mapToPair(p -> new Tuple2<>(p.getId(),p));
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updateResultForCommunity(pubs, to_add_result_communities, outputPath, "publication", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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updateResultForCommunity(dss, to_add_result_communities, outputPath, "dataset", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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updateResultForCommunity(sfw, to_add_result_communities, outputPath, "software", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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updateResultForCommunity(orp, to_add_result_communities, outputPath, "otherresearchproduct", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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//leftouterjoin result.to_add_result_communities (result = java pair rdd result) [left outer join perche' li voglio tutti anche quelli che non ho aggiornato]
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//per quelli che matchano cercare nel risultato se i context da aggiungere sono gia' presenti. Se non ci sono aggiungerli, altrimenti nulla
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*/
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updateResultForCommunity(pubs, to_add_result_communities, outputPath, "publication", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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updateResultForCommunity(dss, to_add_result_communities, outputPath, "dataset", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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updateResultForCommunity(sfw, to_add_result_communities, outputPath, "software", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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updateResultForCommunity(orp, to_add_result_communities, outputPath, "otherresearchproduct", PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME);
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//leftouterjoin result.to_add_result_communities (result = java pair rdd result) [left outer join perche' li voglio tutti anche quelli che non ho aggiornato]
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//per quelli che matchano cercare nel risultato se i context da aggiungere sono gia' presenti. Se non ci sono aggiungerli, altrimenti nulla
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*/
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}
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private static org.apache.spark.sql.Dataset<Row> getUpdateCommunitiesForTable(SparkSession spark, String table){
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String query = "SELECT target_id, collect_set(co.id) context_id " +
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" FROM (SELECT t.id target_id, s.context source_context " +
|
||||
" FROM context_software s " +
|
||||
" JOIN " + table + " t " +
|
||||
" ON s.target = t.id " +
|
||||
" UNION ALL " +
|
||||
" SELECT t.id target_id, d.context source_context " +
|
||||
" FROM dataset_context d " +
|
||||
" JOIN " + table + " t" +
|
||||
" ON s.target = t.id " +
|
||||
" UNION ALL " +
|
||||
" SELECT t.id target_id, p.context source_context " +
|
||||
" FROM publication_context p" +
|
||||
" JOIN " + table +" t " +
|
||||
" on p.target = t.id " +
|
||||
" UNION ALL " +
|
||||
" SELECT t.id target_id, o.context source_context " +
|
||||
" FROM other_context o " +
|
||||
" JOIN " + table + " t " +
|
||||
" ON o.target = t.id) TMP " +
|
||||
" LATERAL VIEW EXPLODE(source_context) MyT as co " +
|
||||
" GROUP BY target_id" ;
|
||||
private static org.apache.spark.sql.Dataset<Row> getUpdateCommunitiesForTable(
|
||||
SparkSession spark, String table) {
|
||||
String query =
|
||||
"SELECT target_id, collect_set(co.id) context_id "
|
||||
+ " FROM (SELECT t.id target_id, s.context source_context "
|
||||
+ " FROM context_software s "
|
||||
+ " JOIN "
|
||||
+ table
|
||||
+ " t "
|
||||
+ " ON s.target = t.id "
|
||||
+ " UNION ALL "
|
||||
+ " SELECT t.id target_id, d.context source_context "
|
||||
+ " FROM dataset_context d "
|
||||
+ " JOIN "
|
||||
+ table
|
||||
+ " t"
|
||||
+ " ON s.target = t.id "
|
||||
+ " UNION ALL "
|
||||
+ " SELECT t.id target_id, p.context source_context "
|
||||
+ " FROM publication_context p"
|
||||
+ " JOIN "
|
||||
+ table
|
||||
+ " t "
|
||||
+ " on p.target = t.id "
|
||||
+ " UNION ALL "
|
||||
+ " SELECT t.id target_id, o.context source_context "
|
||||
+ " FROM other_context o "
|
||||
+ " JOIN "
|
||||
+ table
|
||||
+ " t "
|
||||
+ " ON o.target = t.id) TMP "
|
||||
+ " LATERAL VIEW EXPLODE(source_context) MyT as co "
|
||||
+ " GROUP BY target_id";
|
||||
|
||||
return spark.sql(query);
|
||||
}
|
||||
|
||||
private static JavaRDD<Result> createUpdateForResultDatasetWrite(JavaRDD<Row> toupdateresult, String outputPath, String type, String class_id, String class_name, List<String> communityIdList){
|
||||
return toupdateresult.map(r -> {
|
||||
List<Context> contextList = new ArrayList();
|
||||
List<String> toAddContext = r.getList(1);
|
||||
for (String cId : toAddContext) {
|
||||
if (communityIdList.contains(cId)) {
|
||||
Context newContext = new Context();
|
||||
newContext.setId(cId);
|
||||
newContext.setDataInfo(Arrays.asList(getDataInfo(PROPAGATION_DATA_INFO_TYPE, class_id, class_name)));
|
||||
contextList.add(newContext);
|
||||
}
|
||||
private static JavaRDD<Result> createUpdateForResultDatasetWrite(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
String outputPath,
|
||||
String type,
|
||||
String class_id,
|
||||
String class_name,
|
||||
List<String> communityIdList) {
|
||||
return toupdateresult
|
||||
.map(
|
||||
r -> {
|
||||
List<Context> contextList = new ArrayList();
|
||||
List<String> toAddContext = r.getList(1);
|
||||
for (String cId : toAddContext) {
|
||||
if (communityIdList.contains(cId)) {
|
||||
Context newContext = new Context();
|
||||
newContext.setId(cId);
|
||||
newContext.setDataInfo(
|
||||
Arrays.asList(
|
||||
getDataInfo(
|
||||
PROPAGATION_DATA_INFO_TYPE,
|
||||
class_id,
|
||||
class_name)));
|
||||
contextList.add(newContext);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
if (contextList.size() > 0) {
|
||||
Result ret = new Result();
|
||||
ret.setId(r.getString(0));
|
||||
ret.setContext(contextList);
|
||||
return ret;
|
||||
}
|
||||
return null;
|
||||
}).filter(r -> r != null);
|
||||
if (contextList.size() > 0) {
|
||||
Result ret = new Result();
|
||||
ret.setId(r.getString(0));
|
||||
ret.setContext(contextList);
|
||||
return ret;
|
||||
}
|
||||
return null;
|
||||
})
|
||||
.filter(r -> r != null);
|
||||
}
|
||||
|
||||
private static void updateForSoftwareDataset(JavaRDD<Row> toupdateresult, JavaRDD<Software> result, String outputPath, String type, String class_id, String class_name, List<String> communityIdList){
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(toupdateresult, tmp, outputPath, type, class_id, class_name, communityIdList)
|
||||
.map(r -> (Software) r)
|
||||
.map(s -> new ObjectMapper().writeValueAsString(s))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
private static void updateForSoftwareDataset(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
JavaRDD<Software> result,
|
||||
String outputPath,
|
||||
String type,
|
||||
String class_id,
|
||||
String class_name,
|
||||
List<String> communityIdList) {
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(
|
||||
toupdateresult,
|
||||
tmp,
|
||||
outputPath,
|
||||
type,
|
||||
class_id,
|
||||
class_name,
|
||||
communityIdList)
|
||||
.map(r -> (Software) r)
|
||||
.map(s -> new ObjectMapper().writeValueAsString(s))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
}
|
||||
|
||||
private static void updateForDatasetDataset(JavaRDD<Row> toupdateresult, JavaRDD<Dataset> result, String outputPath, String type, String class_id, String class_name, List<String> communityIdList){
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(toupdateresult, tmp, outputPath, type, class_id, class_name, communityIdList)
|
||||
.map( r-> (Dataset)r)
|
||||
private static void updateForDatasetDataset(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
JavaRDD<Dataset> result,
|
||||
String outputPath,
|
||||
String type,
|
||||
String class_id,
|
||||
String class_name,
|
||||
List<String> communityIdList) {
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(
|
||||
toupdateresult,
|
||||
tmp,
|
||||
outputPath,
|
||||
type,
|
||||
class_id,
|
||||
class_name,
|
||||
communityIdList)
|
||||
.map(r -> (Dataset) r)
|
||||
.map(d -> new ObjectMapper().writeValueAsString(d))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
}
|
||||
|
||||
private static void updateForPublicationDataset(JavaRDD<Row> toupdateresult, JavaRDD<Publication> result, String outputPath, String type, String class_id, String class_name, List<String> communityIdList){
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(toupdateresult, tmp, outputPath, type, class_id, class_name, communityIdList)
|
||||
.map(r -> (Publication)r)
|
||||
.map(p -> new ObjectMapper().writeValueAsString(p))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
private static void updateForPublicationDataset(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
JavaRDD<Publication> result,
|
||||
String outputPath,
|
||||
String type,
|
||||
String class_id,
|
||||
String class_name,
|
||||
List<String> communityIdList) {
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(
|
||||
toupdateresult,
|
||||
tmp,
|
||||
outputPath,
|
||||
type,
|
||||
class_id,
|
||||
class_name,
|
||||
communityIdList)
|
||||
.map(r -> (Publication) r)
|
||||
.map(p -> new ObjectMapper().writeValueAsString(p))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
}
|
||||
|
||||
private static void updateForOtherDataset(JavaRDD<Row> toupdateresult, JavaRDD<OtherResearchProduct> result, String outputPath, String type, String class_id, String class_name, List<String> communityIdList){
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(toupdateresult, tmp, outputPath, type, class_id, class_name, communityIdList)
|
||||
.map( r -> (OtherResearchProduct)r)
|
||||
.map( o -> new ObjectMapper().writeValueAsString(o))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
private static void updateForOtherDataset(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
JavaRDD<OtherResearchProduct> result,
|
||||
String outputPath,
|
||||
String type,
|
||||
String class_id,
|
||||
String class_name,
|
||||
List<String> communityIdList) {
|
||||
JavaPairRDD<String, Result> tmp = result.mapToPair(r -> new Tuple2(r.getId(), r));
|
||||
getUpdateForResultDataset(
|
||||
toupdateresult,
|
||||
tmp,
|
||||
outputPath,
|
||||
type,
|
||||
class_id,
|
||||
class_name,
|
||||
communityIdList)
|
||||
.map(r -> (OtherResearchProduct) r)
|
||||
.map(o -> new ObjectMapper().writeValueAsString(o))
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
}
|
||||
|
||||
private static JavaRDD<Result> getUpdateForResultDataset(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
JavaPairRDD<String, Result> result,
|
||||
String outputPath,
|
||||
String type,
|
||||
String class_id,
|
||||
String class_name,
|
||||
List<String> communityIdList) {
|
||||
return result.leftOuterJoin(
|
||||
toupdateresult.mapToPair(r -> new Tuple2<>(r.getString(0), r.getList(1))))
|
||||
.map(
|
||||
c -> {
|
||||
if (!c._2()._2().isPresent()) {
|
||||
return c._2()._1();
|
||||
}
|
||||
|
||||
|
||||
private static JavaRDD<Result> getUpdateForResultDataset(JavaRDD<Row> toupdateresult, JavaPairRDD<String, Result> result, String outputPath, String type, String class_id, String class_name, List<String> communityIdList){
|
||||
return result.leftOuterJoin(toupdateresult.mapToPair(r -> new Tuple2<>(r.getString(0), r.getList(1))))
|
||||
.map(c -> {
|
||||
if(! c._2()._2().isPresent()){
|
||||
return c._2()._1();
|
||||
}
|
||||
|
||||
List<Object> toAddContext = c._2()._2().get();
|
||||
Set<String> context_set = new HashSet<>();
|
||||
for(Object cId: toAddContext){
|
||||
String id = (String)cId;
|
||||
if (communityIdList.contains(id)){
|
||||
context_set.add(id);
|
||||
}
|
||||
}
|
||||
for (Context context: c._2()._1().getContext()){
|
||||
if(context_set.contains(context)){
|
||||
context_set.remove(context);
|
||||
}
|
||||
}
|
||||
|
||||
List<Context> contextList = context_set.stream().map(co -> {
|
||||
Context newContext = new Context();
|
||||
newContext.setId(co);
|
||||
newContext.setDataInfo(Arrays.asList(getDataInfo(PROPAGATION_DATA_INFO_TYPE, class_id, class_name)));
|
||||
return newContext;
|
||||
|
||||
}).collect(Collectors.toList());
|
||||
|
||||
if(contextList.size() > 0 ){
|
||||
Result r = new Result();
|
||||
r.setId(c._1());
|
||||
r.setContext(contextList);
|
||||
return r;
|
||||
}
|
||||
return null;
|
||||
}).filter(r -> r != null);
|
||||
|
||||
|
||||
// return toupdateresult.mapToPair(r -> new Tuple2<>(r.getString(0), r.getList(1)))
|
||||
// .join(result)
|
||||
// .map(c -> {
|
||||
// List<Object> toAddContext = c._2()._1();
|
||||
// Set<String> context_set = new HashSet<>();
|
||||
// for(Object cId: toAddContext){
|
||||
// String id = (String)cId;
|
||||
// if (communityIdList.contains(id)){
|
||||
// context_set.add(id);
|
||||
// }
|
||||
// }
|
||||
// for (Context context: c._2()._2().getContext()){
|
||||
// if(context_set.contains(context)){
|
||||
// context_set.remove(context);
|
||||
// }
|
||||
// }
|
||||
//
|
||||
// List<Context> contextList = context_set.stream().map(co -> {
|
||||
// Context newContext = new Context();
|
||||
// newContext.setId(co);
|
||||
// newContext.setDataInfo(Arrays.asList(getDataInfo(PROPAGATION_DATA_INFO_TYPE, class_id, class_name)));
|
||||
// return newContext;
|
||||
//
|
||||
// }).collect(Collectors.toList());
|
||||
//
|
||||
// if(contextList.size() > 0 ){
|
||||
// Result r = new Result();
|
||||
// r.setId(c._1());
|
||||
// r.setContext(contextList);
|
||||
// return r;
|
||||
// }
|
||||
// return null;
|
||||
// })
|
||||
// .filter(r -> r != null);
|
||||
}
|
||||
|
||||
private static JavaRDD<Software> createUpdateForSoftwareDataset(JavaRDD<Row> toupdateresult, List<String> communityList,
|
||||
JavaRDD<Software> result, String class_id, String class_name) {
|
||||
return result
|
||||
.mapToPair(s -> new Tuple2<>(s.getId(), s)).leftOuterJoin(getStringResultJavaPairRDD(toupdateresult, communityList))
|
||||
.map(c -> {
|
||||
Software oaf = c._2()._1();
|
||||
if (c._2()._2().isPresent()) {
|
||||
|
||||
HashSet<String> contexts = new HashSet<>(c._2()._2().get());
|
||||
|
||||
for (Context context : oaf.getContext()) {
|
||||
if (contexts.contains(context.getId())){
|
||||
if (!context.getDataInfo().stream().map(di -> di.getInferenceprovenance())
|
||||
.collect(Collectors.toSet()).contains(PROPAGATION_DATA_INFO_TYPE)){
|
||||
context.getDataInfo().add(getDataInfo(PROPAGATION_DATA_INFO_TYPE, class_id, class_name));
|
||||
//community id already in the context of the result. Remove it from the set that has to be added
|
||||
contexts.remove(context.getId());
|
||||
List<Object> toAddContext = c._2()._2().get();
|
||||
Set<String> context_set = new HashSet<>();
|
||||
for (Object cId : toAddContext) {
|
||||
String id = (String) cId;
|
||||
if (communityIdList.contains(id)) {
|
||||
context_set.add(id);
|
||||
}
|
||||
}
|
||||
for (Context context : c._2()._1().getContext()) {
|
||||
if (context_set.contains(context)) {
|
||||
context_set.remove(context);
|
||||
}
|
||||
}
|
||||
}
|
||||
List<Context> cc = oaf.getContext();
|
||||
for(String cId: contexts){
|
||||
Context context = new Context();
|
||||
context.setId(cId);
|
||||
context.setDataInfo(Arrays.asList(getDataInfo(PROPAGATION_DATA_INFO_TYPE, class_id, class_name)));
|
||||
cc.add(context);
|
||||
}
|
||||
oaf.setContext(cc);
|
||||
|
||||
List<Context> contextList =
|
||||
context_set.stream()
|
||||
.map(
|
||||
co -> {
|
||||
Context newContext = new Context();
|
||||
newContext.setId(co);
|
||||
newContext.setDataInfo(
|
||||
Arrays.asList(
|
||||
getDataInfo(
|
||||
PROPAGATION_DATA_INFO_TYPE,
|
||||
class_id,
|
||||
class_name)));
|
||||
return newContext;
|
||||
})
|
||||
.collect(Collectors.toList());
|
||||
|
||||
if (contextList.size() > 0) {
|
||||
Result r = new Result();
|
||||
r.setId(c._1());
|
||||
r.setContext(contextList);
|
||||
return r;
|
||||
}
|
||||
return null;
|
||||
})
|
||||
.filter(r -> r != null);
|
||||
|
||||
// return toupdateresult.mapToPair(r -> new Tuple2<>(r.getString(0), r.getList(1)))
|
||||
// .join(result)
|
||||
// .map(c -> {
|
||||
// List<Object> toAddContext = c._2()._1();
|
||||
// Set<String> context_set = new HashSet<>();
|
||||
// for(Object cId: toAddContext){
|
||||
// String id = (String)cId;
|
||||
// if (communityIdList.contains(id)){
|
||||
// context_set.add(id);
|
||||
// }
|
||||
// }
|
||||
// for (Context context: c._2()._2().getContext()){
|
||||
// if(context_set.contains(context)){
|
||||
// context_set.remove(context);
|
||||
// }
|
||||
// }
|
||||
//
|
||||
// List<Context> contextList = context_set.stream().map(co -> {
|
||||
// Context newContext = new Context();
|
||||
// newContext.setId(co);
|
||||
//
|
||||
// newContext.setDataInfo(Arrays.asList(getDataInfo(PROPAGATION_DATA_INFO_TYPE, class_id,
|
||||
// class_name)));
|
||||
// return newContext;
|
||||
//
|
||||
// }).collect(Collectors.toList());
|
||||
//
|
||||
// if(contextList.size() > 0 ){
|
||||
// Result r = new Result();
|
||||
// r.setId(c._1());
|
||||
// r.setContext(contextList);
|
||||
// return r;
|
||||
// }
|
||||
// return null;
|
||||
// })
|
||||
// .filter(r -> r != null);
|
||||
}
|
||||
|
||||
private static JavaRDD<Software> createUpdateForSoftwareDataset(
|
||||
JavaRDD<Row> toupdateresult,
|
||||
List<String> communityList,
|
||||
JavaRDD<Software> result,
|
||||
String class_id,
|
||||
String class_name) {
|
||||
return result.mapToPair(s -> new Tuple2<>(s.getId(), s))
|
||||
.leftOuterJoin(getStringResultJavaPairRDD(toupdateresult, communityList))
|
||||
.map(
|
||||
c -> {
|
||||
Software oaf = c._2()._1();
|
||||
if (c._2()._2().isPresent()) {
|
||||
|
||||
HashSet<String> contexts = new HashSet<>(c._2()._2().get());
|
||||
|
||||
for (Context context : oaf.getContext()) {
|
||||
if (contexts.contains(context.getId())) {
|
||||
if (!context.getDataInfo().stream()
|
||||
.map(di -> di.getInferenceprovenance())
|
||||
.collect(Collectors.toSet())
|
||||
.contains(PROPAGATION_DATA_INFO_TYPE)) {
|
||||
context.getDataInfo()
|
||||
.add(
|
||||
getDataInfo(
|
||||
PROPAGATION_DATA_INFO_TYPE,
|
||||
class_id,
|
||||
class_name));
|
||||
// community id already in the context of the result.
|
||||
// Remove it from the set that has to be added
|
||||
contexts.remove(context.getId());
|
||||
}
|
||||
}
|
||||
}
|
||||
List<Context> cc = oaf.getContext();
|
||||
for (String cId : contexts) {
|
||||
Context context = new Context();
|
||||
context.setId(cId);
|
||||
context.setDataInfo(
|
||||
Arrays.asList(
|
||||
getDataInfo(
|
||||
PROPAGATION_DATA_INFO_TYPE,
|
||||
class_id,
|
||||
class_name)));
|
||||
cc.add(context);
|
||||
}
|
||||
oaf.setContext(cc);
|
||||
}
|
||||
return oaf;
|
||||
});
|
||||
}
|
||||
|
||||
private static JavaPairRDD<String, List<String>> getStringResultJavaPairRDD(
|
||||
JavaRDD<Row> toupdateresult, List<String> communityList) {
|
||||
return toupdateresult.mapToPair(
|
||||
c -> {
|
||||
List<String> contextList = new ArrayList<>();
|
||||
List<String> contexts = c.getList(1);
|
||||
for (String context : contexts) {
|
||||
if (communityList.contains(context)) {
|
||||
contextList.add(context);
|
||||
}
|
||||
}
|
||||
return oaf;
|
||||
|
||||
return new Tuple2<>(c.getString(0), contextList);
|
||||
});
|
||||
}
|
||||
|
||||
private static JavaPairRDD<String, List<String>> getStringResultJavaPairRDD(JavaRDD<Row> toupdateresult, List<String> communityList) {
|
||||
return toupdateresult.mapToPair(c -> {
|
||||
|
||||
List<String> contextList = new ArrayList<>();
|
||||
List<String> contexts = c.getList(1);
|
||||
for (String context : contexts) {
|
||||
if (communityList.contains(context)) {
|
||||
contextList.add(context);
|
||||
}
|
||||
}
|
||||
|
||||
return new Tuple2<>(c.getString(0) ,contextList);
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
private static org.apache.spark.sql.Dataset<Row> getContext(SparkSession spark, String table){
|
||||
String query = "SELECT relation.source, " + table +".context , relation.target " +
|
||||
"FROM " + table +
|
||||
" JOIN relation " +
|
||||
"ON id = source" ;
|
||||
private static org.apache.spark.sql.Dataset<Row> getContext(SparkSession spark, String table) {
|
||||
String query =
|
||||
"SELECT relation.source, "
|
||||
+ table
|
||||
+ ".context , relation.target "
|
||||
+ "FROM "
|
||||
+ table
|
||||
+ " JOIN relation "
|
||||
+ "ON id = source";
|
||||
|
||||
return spark.sql(query);
|
||||
}
|
||||
|
||||
private static Boolean relatedToCommunities(Result r, List<String> communityIdList) {
|
||||
Set<String> result_communities = r.getContext()
|
||||
.stream()
|
||||
.map(c -> c.getId())
|
||||
.collect(Collectors.toSet());
|
||||
Set<String> result_communities =
|
||||
r.getContext().stream().map(c -> c.getId()).collect(Collectors.toSet());
|
||||
for (String communityId : result_communities) {
|
||||
if (communityIdList.contains(communityId)) {
|
||||
return true;
|
||||
|
|
@ -419,44 +589,61 @@ public class SparkResultToCommunityThroughSemRelJob3 {
|
|||
return false;
|
||||
}
|
||||
|
||||
private static void updateResult(JavaPairRDD<String, Result> results, JavaPairRDD<String, TypedRow> toupdateresult, String outputPath, String type) {
|
||||
private static void updateResult(
|
||||
JavaPairRDD<String, Result> results,
|
||||
JavaPairRDD<String, TypedRow> toupdateresult,
|
||||
String outputPath,
|
||||
String type) {
|
||||
results.leftOuterJoin(toupdateresult)
|
||||
.map(p -> {
|
||||
Result r = p._2()._1();
|
||||
if (p._2()._2().isPresent()){
|
||||
Set<String> communityList = p._2()._2().get().getAccumulator();
|
||||
for(Context c: r.getContext()){
|
||||
if (communityList.contains(c.getId())){
|
||||
//verify if the datainfo for this context contains propagation
|
||||
if (!c.getDataInfo().stream().map(di -> di.getInferenceprovenance()).collect(Collectors.toSet()).contains(PROPAGATION_DATA_INFO_TYPE)){
|
||||
c.getDataInfo().add(getDataInfo(PROPAGATION_DATA_INFO_TYPE, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME));
|
||||
//community id already in the context of the result. Remove it from the set that has to be added
|
||||
communityList.remove(c.getId());
|
||||
.map(
|
||||
p -> {
|
||||
Result r = p._2()._1();
|
||||
if (p._2()._2().isPresent()) {
|
||||
Set<String> communityList = p._2()._2().get().getAccumulator();
|
||||
for (Context c : r.getContext()) {
|
||||
if (communityList.contains(c.getId())) {
|
||||
// verify if the datainfo for this context contains
|
||||
// propagation
|
||||
if (!c.getDataInfo().stream()
|
||||
.map(di -> di.getInferenceprovenance())
|
||||
.collect(Collectors.toSet())
|
||||
.contains(PROPAGATION_DATA_INFO_TYPE)) {
|
||||
c.getDataInfo()
|
||||
.add(
|
||||
getDataInfo(
|
||||
PROPAGATION_DATA_INFO_TYPE,
|
||||
PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
|
||||
PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME));
|
||||
// community id already in the context of the result.
|
||||
// Remove it from the set that has to be added
|
||||
communityList.remove(c.getId());
|
||||
}
|
||||
}
|
||||
}
|
||||
List<Context> cc = r.getContext();
|
||||
for (String cId : communityList) {
|
||||
Context context = new Context();
|
||||
context.setId(cId);
|
||||
context.setDataInfo(
|
||||
Arrays.asList(
|
||||
getDataInfo(
|
||||
PROPAGATION_DATA_INFO_TYPE,
|
||||
PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
|
||||
PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME)));
|
||||
cc.add(context);
|
||||
}
|
||||
r.setContext(cc);
|
||||
}
|
||||
}
|
||||
List<Context> cc = r.getContext();
|
||||
for(String cId: communityList){
|
||||
Context context = new Context();
|
||||
context.setId(cId);
|
||||
context.setDataInfo(Arrays.asList(getDataInfo(PROPAGATION_DATA_INFO_TYPE, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME)));
|
||||
cc.add(context);
|
||||
}
|
||||
r.setContext(cc);
|
||||
}
|
||||
return r;
|
||||
})
|
||||
return r;
|
||||
})
|
||||
.map(p -> new ObjectMapper().writeValueAsString(p))
|
||||
.saveAsTextFile(outputPath+"/"+type);
|
||||
.saveAsTextFile(outputPath + "/" + type);
|
||||
}
|
||||
|
||||
|
||||
|
||||
private static TypedRow getTypedRow(List<String> communityIdList, List<Context> context, String id, String type) {
|
||||
Set<String> result_communities = context
|
||||
.stream()
|
||||
.map(c -> c.getId())
|
||||
.collect(Collectors.toSet());
|
||||
private static TypedRow getTypedRow(
|
||||
List<String> communityIdList, List<Context> context, String id, String type) {
|
||||
Set<String> result_communities =
|
||||
context.stream().map(c -> c.getId()).collect(Collectors.toSet());
|
||||
TypedRow tp = new TypedRow();
|
||||
tp.setSourceId(id);
|
||||
tp.setType(type);
|
||||
|
|
|
|||
Loading…
Reference in New Issue