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the wf with all the three steps for blacklisting relations

This commit is contained in:
Miriam Baglioni 2020-04-30 18:28:46 +02:00
parent 95433e1087
commit 38ecfd5785
1 changed files with 52 additions and 1 deletions
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53
dhp-workflows/dhp-blacklist/src/main/resources/eu/dnetlib/dhp/blacklist/oozie_app/workflow.xml
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@ -12,6 +12,10 @@
<name>postgresPassword</name> <name>postgresPassword</name>
<description>the postgres password</description> <description>the postgres password</description>
</property> </property>
<property>
<name>sourcePath</name>
<description>the source path</description>
</property>
</parameters> </parameters>
<start to="reset-outputpath"/> <start to="reset-outputpath"/>
@ -38,9 +42,56 @@
<arg>--postgresUser</arg><arg>${postgresUser}</arg> <arg>--postgresUser</arg><arg>${postgresUser}</arg>
<arg>--postgresPassword</arg><arg>${postgresPassword}</arg> <arg>--postgresPassword</arg><arg>${postgresPassword}</arg>
</java> </java>
<ok to="End"/> <ok to="prepare_merged_relation"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
<action name="prepare_merged_relation">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>PrepareMergedRelation</name>
<class>eu.dnetlib.dhp.blacklist.PrepareMergedRelationJob</class>
<jar>dhp-blacklist-${projectVersion}.jar</jar>
<spark-opts>
--executor-cores=${sparkExecutorCores}
--executor-memory=${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
</spark-opts>
<arg>--sourcePath</arg><arg>${sourcePath}</arg>
<arg>--outputPath</arg><arg>${workingDir}/relation</arg>
<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
</spark>
<ok to="apply_blacklist"/>
<error to="Kill"/>
</action>
<action name="apply_blacklist">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>ApplyBlacklist</name>
<class>eu.dnetlib.dhp.blacklist.SparkRemoveBlacklistedRelationJob</class>
<jar>dhp-blacklist-${projectVersion}.jar</jar>
<spark-opts>
--executor-cores=${sparkExecutorCores}
--executor-memory=${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
</spark-opts>
<arg>--sourcePath</arg><arg>${sourcePath}</arg>
<arg>--outputPath</arg><arg>${workingDir}/relation</arg>
<arg>--hdfsPath</arg><arg>${workingDir}/blacklist</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>
</action>
<end name="End"/> <end name="End"/>
</workflow-app> </workflow-app>