Merge branch 'master' into deduptesting

This commit is contained in:
Claudio Atzori 2020-07-08 22:32:01 +02:00
commit 18c555cd79
19 changed files with 293 additions and 112 deletions

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@ -0,0 +1,112 @@
package eu.dnetlib.dhp.broker.oa;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Encoder;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import org.apache.spark.sql.TypedColumn;
import org.apache.spark.sql.expressions.Aggregator;
import org.apache.spark.util.LongAccumulator;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.model.Event;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import scala.Tuple2;
public class CheckDuplictedIdsJob {
private static final Logger log = LoggerFactory.getLogger(CheckDuplictedIdsJob.class);
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
CheckDuplictedIdsJob.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
parser.parseArgument(args);
final SparkConf conf = new SparkConf();
final String eventsPath = parser.get("workingPath") + "/events";
log.info("eventsPath: {}", eventsPath);
final String countPath = parser.get("workingPath") + "/counts";
log.info("countPath: {}", countPath);
final SparkSession spark = SparkSession.builder().config(conf).getOrCreate();
final LongAccumulator total = spark.sparkContext().longAccumulator("invaild_event_id");
final TypedColumn<Tuple2<String, Long>, Tuple2<String, Long>> agg = new CountAggregator().toColumn();
ClusterUtils
.readPath(spark, eventsPath, Event.class)
.map(e -> new Tuple2<>(e.getEventId(), 1l), Encoders.tuple(Encoders.STRING(), Encoders.LONG()))
.groupByKey(t -> t._1, Encoders.STRING())
.agg(agg)
.map(t -> t._2, Encoders.tuple(Encoders.STRING(), Encoders.LONG()))
.filter(t -> t._2 > 1)
.map(o -> ClusterUtils.incrementAccumulator(o, total), Encoders.tuple(Encoders.STRING(), Encoders.LONG()))
.write()
.mode(SaveMode.Overwrite)
.json(countPath);
;
}
private static String eventAsJsonString(final Event f) throws JsonProcessingException {
return new ObjectMapper().writeValueAsString(f);
}
}
class CountAggregator extends Aggregator<Tuple2<String, Long>, Tuple2<String, Long>, Tuple2<String, Long>> {
/**
*
*/
private static final long serialVersionUID = 1395935985734672538L;
@Override
public Encoder<Tuple2<String, Long>> bufferEncoder() {
return Encoders.tuple(Encoders.STRING(), Encoders.LONG());
}
@Override
public Tuple2<String, Long> finish(final Tuple2<String, Long> arg0) {
return arg0;
}
@Override
public Tuple2<String, Long> merge(final Tuple2<String, Long> arg0, final Tuple2<String, Long> arg1) {
final String s = StringUtils.defaultIfBlank(arg0._1, arg1._1);
return new Tuple2<>(s, arg0._2 + arg1._2);
}
@Override
public Encoder<Tuple2<String, Long>> outputEncoder() {
return Encoders.tuple(Encoders.STRING(), Encoders.LONG());
}
@Override
public Tuple2<String, Long> reduce(final Tuple2<String, Long> arg0, final Tuple2<String, Long> arg1) {
final String s = StringUtils.defaultIfBlank(arg0._1, arg1._1);
return new Tuple2<>(s, arg0._2 + arg1._2);
}
@Override
public Tuple2<String, Long> zero() {
return new Tuple2<>(null, 0l);
}
}

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@ -3,8 +3,6 @@ package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Arrays;
import java.util.HashSet;
import java.util.Map; import java.util.Map;
import java.util.Optional; import java.util.Optional;
import java.util.Set; import java.util.Set;
@ -63,13 +61,13 @@ public class GenerateEventsJob {
final String eventsPath = workingPath + "/events"; final String eventsPath = workingPath + "/events";
log.info("eventsPath: {}", eventsPath); log.info("eventsPath: {}", eventsPath);
final Set<String> dsIdWhitelist = parseParamAsList(parser, "datasourceIdWhitelist"); final Set<String> dsIdWhitelist = ClusterUtils.parseParamAsList(parser, "datasourceIdWhitelist");
log.info("datasourceIdWhitelist: {}", StringUtils.join(dsIdWhitelist, ",")); log.info("datasourceIdWhitelist: {}", StringUtils.join(dsIdWhitelist, ","));
final Set<String> dsTypeWhitelist = parseParamAsList(parser, "datasourceTypeWhitelist"); final Set<String> dsTypeWhitelist = ClusterUtils.parseParamAsList(parser, "datasourceTypeWhitelist");
log.info("datasourceTypeWhitelist: {}", StringUtils.join(dsTypeWhitelist, ",")); log.info("datasourceTypeWhitelist: {}", StringUtils.join(dsTypeWhitelist, ","));
final Set<String> dsIdBlacklist = parseParamAsList(parser, "datasourceIdBlacklist"); final Set<String> dsIdBlacklist = ClusterUtils.parseParamAsList(parser, "datasourceIdBlacklist");
log.info("datasourceIdBlacklist: {}", StringUtils.join(dsIdBlacklist, ",")); log.info("datasourceIdBlacklist: {}", StringUtils.join(dsIdBlacklist, ","));
final SparkConf conf = new SparkConf(); final SparkConf conf = new SparkConf();
@ -103,22 +101,6 @@ public class GenerateEventsJob {
} }
private static Set<String> parseParamAsList(final ArgumentApplicationParser parser, final String key) {
final String s = parser.get(key).trim();
final Set<String> res = new HashSet<>();
if (s.length() > 1) { // A value of a single char (for example: '-') indicates an empty list
Arrays
.stream(s.split(","))
.map(String::trim)
.filter(StringUtils::isNotBlank)
.forEach(res::add);
}
return res;
}
public static Map<String, LongAccumulator> prepareAccumulators(final SparkContext sc) { public static Map<String, LongAccumulator> prepareAccumulators(final SparkContext sc) {
return EventFinder return EventFinder

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@ -48,7 +48,7 @@ public class IndexOnESJob {
final JavaRDD<String> inputRdd = ClusterUtils final JavaRDD<String> inputRdd = ClusterUtils
.readPath(spark, eventsPath, Event.class) .readPath(spark, eventsPath, Event.class)
.limit(10000) // TODO REMOVE // .limit(10000) // TODO REMOVE
.map(IndexOnESJob::eventAsJsonString, Encoders.STRING()) .map(IndexOnESJob::eventAsJsonString, Encoders.STRING())
.javaRDD(); .javaRDD();

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@ -15,7 +15,7 @@ public class EnrichMissingProject extends UpdateMatcher<OaBrokerProject> {
super(20, super(20,
prj -> Topic.ENRICH_MISSING_PROJECT, prj -> Topic.ENRICH_MISSING_PROJECT,
(p, prj) -> p.getProjects().add(prj), (p, prj) -> p.getProjects().add(prj),
prj -> prj.getFunder() + "::" + prj.getFundingProgram() + prj.getCode()); prj -> prj.getOpenaireId());
} }
@Override @Override

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@ -18,11 +18,7 @@ public class EnrichMoreProject extends UpdateMatcher<OaBrokerProject> {
super(20, super(20,
prj -> Topic.ENRICH_MORE_PROJECT, prj -> Topic.ENRICH_MORE_PROJECT,
(p, prj) -> p.getProjects().add(prj), (p, prj) -> p.getProjects().add(prj),
prj -> projectAsString(prj)); prj -> prj.getOpenaireId());
}
private static String projectAsString(final OaBrokerProject prj) {
return prj.getFunder() + "::" + prj.getFundingProgram() + "::" + prj.getCode();
} }
@Override @Override
@ -36,13 +32,13 @@ public class EnrichMoreProject extends UpdateMatcher<OaBrokerProject> {
final Set<String> existingProjects = target final Set<String> existingProjects = target
.getProjects() .getProjects()
.stream() .stream()
.map(EnrichMoreProject::projectAsString) .map(p -> p.getOpenaireId())
.collect(Collectors.toSet()); .collect(Collectors.toSet());
return source return source
.getProjects() .getProjects()
.stream() .stream()
.filter(p -> !existingProjects.contains(projectAsString(p))) .filter(p -> !existingProjects.contains(p.getOpenaireId()))
.collect(Collectors.toList()); .collect(Collectors.toList());
} }

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@ -1,6 +1,11 @@
package eu.dnetlib.dhp.broker.oa.util; package eu.dnetlib.dhp.broker.oa.util;
import java.util.Arrays;
import java.util.HashSet;
import java.util.Set;
import org.apache.commons.lang3.StringUtils;
import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Encoders;
@ -10,6 +15,7 @@ import org.apache.spark.util.LongAccumulator;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport; import eu.dnetlib.dhp.common.HdfsSupport;
public class ClusterUtils { public class ClusterUtils {
@ -53,7 +59,9 @@ public class ClusterUtils {
return o; return o;
} }
public static <T> void save(final Dataset<T> dataset, final String path, final Class<T> clazz, public static <T> void save(final Dataset<T> dataset,
final String path,
final Class<T> clazz,
final LongAccumulator acc) { final LongAccumulator acc) {
dataset dataset
.map(o -> ClusterUtils.incrementAccumulator(o, acc), Encoders.bean(clazz)) .map(o -> ClusterUtils.incrementAccumulator(o, acc), Encoders.bean(clazz))
@ -62,4 +70,20 @@ public class ClusterUtils {
.json(path); .json(path);
} }
public static Set<String> parseParamAsList(final ArgumentApplicationParser parser, final String key) {
final String s = parser.get(key).trim();
final Set<String> res = new HashSet<>();
if (s.length() > 1) { // A value of a single char (for example: '-') indicates an empty list
Arrays
.stream(s.split(","))
.map(String::trim)
.filter(StringUtils::isNotBlank)
.forEach(res::add);
}
return res;
}
} }

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@ -142,6 +142,7 @@ public class ConversionUtils {
.filter(pid -> pid.getQualifier().getClassid() != null) .filter(pid -> pid.getQualifier().getClassid() != null)
.filter(pid -> pid.getQualifier().getClassid().equalsIgnoreCase("orcid")) .filter(pid -> pid.getQualifier().getClassid().equalsIgnoreCase("orcid"))
.map(pid -> pid.getValue()) .map(pid -> pid.getValue())
.map(pid -> cleanOrcid(pid))
.filter(StringUtils::isNotBlank) .filter(StringUtils::isNotBlank)
.findFirst() .findFirst()
.orElse(null) : null; .orElse(null) : null;
@ -149,6 +150,11 @@ public class ConversionUtils {
return new OaBrokerAuthor(author.getFullname(), pids); return new OaBrokerAuthor(author.getFullname(), pids);
} }
private static String cleanOrcid(final String s) {
final String match = "//orcid.org/";
return s.contains(match) ? StringUtils.substringAfter(s, match) : s;
}
private static OaBrokerJournal oafJournalToBrokerJournal(final Journal journal) { private static OaBrokerJournal oafJournalToBrokerJournal(final Journal journal) {
if (journal == null) { if (journal == null) {
return null; return null;

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@ -70,7 +70,6 @@ public class EventFinder {
matchers.add(new EnrichMissingDatasetReferences()); matchers.add(new EnrichMissingDatasetReferences());
matchers.add(new EnrichMissingDatasetIsSupplementedTo()); matchers.add(new EnrichMissingDatasetIsSupplementedTo());
matchers.add(new EnrichMissingDatasetIsSupplementedBy()); matchers.add(new EnrichMissingDatasetIsSupplementedBy());
matchers.add(new EnrichMissingAbstract());
} }
public static EventGroup generateEvents(final ResultGroup results, public static EventGroup generateEvents(final ResultGroup results,

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@ -447,7 +447,7 @@
<spark-opts> <spark-opts>
--executor-memory=${sparkExecutorMemory} --executor-memory=${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory} --driver-memory=${sparkDriverMemory}
--conf spark.dynamicAllocation.maxExecutors="2" --conf spark.dynamicAllocation.maxExecutors="8"
--conf spark.extraListeners=${spark2ExtraListeners} --conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}

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@ -73,33 +73,32 @@
</configuration> </configuration>
</global> </global>
<start to="index_es"/> <start to="count"/>
<kill name="Kill"> <kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message> <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill> </kill>
<action name="index_es"> <action name="count">
<spark xmlns="uri:oozie:spark-action:0.2"> <spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master> <master>yarn</master>
<mode>cluster</mode> <mode>cluster</mode>
<name>IndexOnESJob</name> <name>Count</name>
<class>eu.dnetlib.dhp.broker.oa.IndexOnESJob</class> <class>eu.dnetlib.dhp.broker.oa.CheckDuplictedIdsJob</class>
<jar>dhp-broker-events-${projectVersion}.jar</jar> <jar>dhp-broker-events-${projectVersion}.jar</jar>
<spark-opts> <spark-opts>
--executor-cores=${sparkExecutorCores}
--executor-memory=${sparkExecutorMemory} --executor-memory=${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory} --driver-memory=${sparkDriverMemory}
--conf spark.dynamicAllocation.maxExecutors="2"
--conf spark.extraListeners=${spark2ExtraListeners} --conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.shuffle.partitions=3840 --conf spark.sql.shuffle.partitions=3840
</spark-opts> </spark-opts>
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
<arg>--workingPath</arg><arg>${workingPath}</arg> <arg>--workingPath</arg><arg>${workingPath}</arg>
<arg>--index</arg><arg>${esIndexName}</arg>
<arg>--esHost</arg><arg>${esIndexHost}</arg>
</spark> </spark>
<ok to="End"/> <ok to="End"/>
<error to="Kill"/> <error to="Kill"/>

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@ -45,6 +45,16 @@ public class EntityMergerTest implements Serializable {
} }
@Test
public void softwareMergerTest() throws InstantiationException, IllegalAccessException {
List<Tuple2<String, Software>> softwares = readSample(testEntityBasePath + "/software_merge.json", Software.class);
Software merged = DedupRecordFactory
.entityMerger(dedupId, softwares.iterator(), 0, dataInfo, Software.class);
System.out.println(merged.getBestaccessright().getClassid());
}
@Test @Test
public void publicationMergerTest() throws InstantiationException, IllegalAccessException { public void publicationMergerTest() throws InstantiationException, IllegalAccessException {

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@ -8,6 +8,7 @@ import java.util.Objects;
import java.util.Optional; import java.util.Optional;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import eu.dnetlib.dhp.oa.graph.raw.AbstractMdRecordToOafMapper;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
@ -97,7 +98,7 @@ public class CleanGraphSparkJob {
.json(outputPath); .json(outputPath);
} }
private static <T extends Oaf> T fixDefaults(T value) { protected static <T extends Oaf> T fixDefaults(T value) {
if (value instanceof Datasource) { if (value instanceof Datasource) {
// nothing to clean here // nothing to clean here
} else if (value instanceof Project) { } else if (value instanceof Project) {
@ -134,11 +135,6 @@ public class CleanGraphSparkJob {
.setResourcetype( .setResourcetype(
qualifier("UNKNOWN", "Unknown", ModelConstants.DNET_DATA_CITE_RESOURCE)); qualifier("UNKNOWN", "Unknown", ModelConstants.DNET_DATA_CITE_RESOURCE));
} }
if (Objects.isNull(r.getBestaccessright()) || StringUtils.isBlank(r.getBestaccessright().getClassid())) {
r
.setBestaccessright(
qualifier("UNKNOWN", "not available", ModelConstants.DNET_ACCESS_MODES));
}
if (Objects.nonNull(r.getInstance())) { if (Objects.nonNull(r.getInstance())) {
for (Instance i : r.getInstance()) { for (Instance i : r.getInstance()) {
if (Objects.isNull(i.getAccessright()) || StringUtils.isBlank(i.getAccessright().getClassid())) { if (Objects.isNull(i.getAccessright()) || StringUtils.isBlank(i.getAccessright().getClassid())) {
@ -152,6 +148,15 @@ public class CleanGraphSparkJob {
} }
} }
} }
if (Objects.isNull(r.getBestaccessright()) || StringUtils.isBlank(r.getBestaccessright().getClassid())) {
Qualifier bestaccessrights = AbstractMdRecordToOafMapper.createBestAccessRights(r.getInstance());
if (Objects.isNull(bestaccessrights)) {
r.setBestaccessright(
qualifier("UNKNOWN", "not available", ModelConstants.DNET_ACCESS_MODES));
} else {
r.setBestaccessright(bestaccessrights);
}
}
if (Objects.nonNull(r.getAuthor())) { if (Objects.nonNull(r.getAuthor())) {
boolean nullRank = r boolean nullRank = r
.getAuthor() .getAuthor()

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@ -378,6 +378,10 @@ public abstract class AbstractMdRecordToOafMapper {
protected abstract Field<String> prepareDatasetStorageDate(Document doc, DataInfo info); protected abstract Field<String> prepareDatasetStorageDate(Document doc, DataInfo info);
public static Qualifier createBestAccessRights(final List<Instance> instanceList) {
return getBestAccessRights(instanceList);
}
protected static Qualifier getBestAccessRights(final List<Instance> instanceList) { protected static Qualifier getBestAccessRights(final List<Instance> instanceList) {
if (instanceList != null) { if (instanceList != null) {
final Optional<Qualifier> min = instanceList final Optional<Qualifier> min = instanceList

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@ -57,6 +57,8 @@ public class CleaningFunctionTest {
String json = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/result.json")); String json = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/result.json"));
Publication p_in = MAPPER.readValue(json, Publication.class); Publication p_in = MAPPER.readValue(json, Publication.class);
assertNull(p_in.getBestaccessright());
assertTrue(p_in instanceof Result); assertTrue(p_in instanceof Result);
assertTrue(p_in instanceof Publication); assertTrue(p_in instanceof Publication);
@ -84,6 +86,9 @@ public class CleaningFunctionTest {
.map(p -> p.getQualifier()) .map(p -> p.getQualifier())
.allMatch(q -> pidTerms.contains(q.getClassid()))); .allMatch(q -> pidTerms.contains(q.getClassid())));
Publication p_defaults = CleanGraphSparkJob.fixDefaults(p_out);
assertEquals("CLOSED", p_defaults.getBestaccessright().getClassid());
// TODO add more assertions to verity the cleaned values // TODO add more assertions to verity the cleaned values
System.out.println(MAPPER.writeValueAsString(p_out)); System.out.println(MAPPER.writeValueAsString(p_out));

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@ -185,12 +185,7 @@
"surname": "" "surname": ""
} }
], ],
"bestaccessright": { "bestaccessright": null,
"classid": "CLOSED",
"classname": "Closed Access",
"schemeid": "dnet:access_modes",
"schemename": "dnet:access_modes"
},
"collectedfrom": [ "collectedfrom": [
{ {
"key": "10|CSC_________::a2b9ce8435390bcbfc05f3cae3948747", "key": "10|CSC_________::a2b9ce8435390bcbfc05f3cae3948747",

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@ -156,6 +156,7 @@ public class PrepareRelationsJob {
.parquet(outputPath); .parquet(outputPath);
} }
// experimental
private static void prepareRelationsDataset( private static void prepareRelationsDataset(
SparkSession spark, String inputRelationsPath, String outputPath, Set<String> relationFilter, int maxRelations, SparkSession spark, String inputRelationsPath, String outputPath, Set<String> relationFilter, int maxRelations,
int relPartitions) { int relPartitions) {

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@ -134,6 +134,7 @@
<arg>--inputRelationsPath</arg><arg>${inputGraphRootPath}/relation</arg> <arg>--inputRelationsPath</arg><arg>${inputGraphRootPath}/relation</arg>
<arg>--outputPath</arg><arg>${workingDir}/relation</arg> <arg>--outputPath</arg><arg>${workingDir}/relation</arg>
<arg>--maxRelations</arg><arg>${maxRelations}</arg> <arg>--maxRelations</arg><arg>${maxRelations}</arg>
<arg>--relationFilter</arg><arg>${relationFilter}</arg>
<arg>--relPartitions</arg><arg>5000</arg> <arg>--relPartitions</arg><arg>5000</arg>
</spark> </spark>
<ok to="fork_join_related_entities"/> <ok to="fork_join_related_entities"/>

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@ -11,6 +11,29 @@
<WORKFLOW_TYPE>Data Provision</WORKFLOW_TYPE> <WORKFLOW_TYPE>Data Provision</WORKFLOW_TYPE>
<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY> <WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
<CONFIGURATION start="manual"> <CONFIGURATION start="manual">
<NODE isStart="true" name="setReuseContent" type="SetEnvParameter">
<DESCRIPTION>reuse cached content from the aggregation system</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseContent</PARAM>
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setContentPath" type="SetEnvParameter">
<DESCRIPTION>set the aggregator content path</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">contentPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_aggregator</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setAggregatorGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setAggregatorGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the path containing the AGGREGATOR graph</DESCRIPTION> <DESCRIPTION>Set the path containing the AGGREGATOR graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -62,87 +85,94 @@
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setCleanedGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setOrcidGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_cleaned</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_orcid</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setOrcidGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_orcid</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setBulkTaggingGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setBulkTaggingGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_bulktagging</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_bulktagging</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setAffiliationGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setAffiliationGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_affiliation</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_affiliation</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setCommunityOrganizationGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setCommunityOrganizationGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_comunity_organization</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_comunity_organization</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setFundingGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setFundingGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_funding</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_funding</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setCommunitySemRelGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setCommunitySemRelGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_comunity_sem_rel</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_comunity_sem_rel</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setCountryGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setCountryGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_country</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_country</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setCleanedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setBlacklistedGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setBlacklistedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -153,6 +183,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setIsLookUpUrl" type="SetEnvParameter"> <NODE isStart="true" name="setIsLookUpUrl" type="SetEnvParameter">
<DESCRIPTION>Set the lookup address</DESCRIPTION> <DESCRIPTION>Set the lookup address</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -163,6 +194,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setBulkTaggingPathMap" type="SetEnvParameter"> <NODE isStart="true" name="setBulkTaggingPathMap" type="SetEnvParameter">
<DESCRIPTION>Set the map of paths for the Bulk Tagging</DESCRIPTION> <DESCRIPTION>Set the map of paths for the Bulk Tagging</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -173,6 +205,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setPropagationOrganizationCommunityMap" type="SetEnvParameter"> <NODE isStart="true" name="setPropagationOrganizationCommunityMap" type="SetEnvParameter">
<DESCRIPTION>Set the map of associations organization, community list for the propagation of community to result through organization</DESCRIPTION> <DESCRIPTION>Set the map of associations organization, community list for the propagation of community to result through organization</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -185,6 +218,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setDedupConfig" type="SetEnvParameter"> <NODE isStart="true" name="setDedupConfig" type="SetEnvParameter">
<DESCRIPTION>Set the dedup orchestrator name</DESCRIPTION> <DESCRIPTION>Set the dedup orchestrator name</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -195,6 +229,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="actionSetsRaw" type="SetEnvParameter"> <NODE isStart="true" name="actionSetsRaw" type="SetEnvParameter">
<DESCRIPTION>declares the ActionSet ids to promote in the RAW graph</DESCRIPTION> <DESCRIPTION>declares the ActionSet ids to promote in the RAW graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -205,6 +240,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="actionSetsIIS" type="SetEnvParameter"> <NODE isStart="true" name="actionSetsIIS" type="SetEnvParameter">
<DESCRIPTION>declares the ActionSet ids to promote in the INFERRED graph</DESCRIPTION> <DESCRIPTION>declares the ActionSet ids to promote in the INFERRED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -215,6 +251,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isJoin="true" name="waitConfig"> <NODE isJoin="true" name="waitConfig">
<DESCRIPTION>wait configurations</DESCRIPTION> <DESCRIPTION>wait configurations</DESCRIPTION>
<PARAMETERS/> <PARAMETERS/>
@ -222,6 +259,7 @@
<ARC to="aggregatorGraph"/> <ARC to="aggregatorGraph"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="aggregatorGraph" type="SubmitHadoopJob"> <NODE name="aggregatorGraph" type="SubmitHadoopJob">
<DESCRIPTION>create the AGGREGATOR graph</DESCRIPTION> <DESCRIPTION>create the AGGREGATOR graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -230,7 +268,9 @@
<PARAM managedBy="system" name="envParams" required="true" type="string"> <PARAM managedBy="system" name="envParams" required="true" type="string">
{ {
'graphOutputPath' : 'aggregatorGraphPath', 'graphOutputPath' : 'aggregatorGraphPath',
'isLookupUrl' : 'isLookUpUrl' 'isLookupUrl' : 'isLookUpUrl',
'reuseContent' : 'reuseContent',
'contentPath' : 'contentPath'
} }
</PARAM> </PARAM>
<PARAM managedBy="system" name="params" required="true" type="string"> <PARAM managedBy="system" name="params" required="true" type="string">
@ -241,8 +281,6 @@
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus', 'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet', 'postgresUser' : 'dnet',
'postgresPassword' : '', 'postgresPassword' : '',
'reuseContent' : 'false',
'contentPath' : '/tmp/beta_provision/aggregator',
'workingDir' : '/tmp/beta_provision/working_dir/aggregator' 'workingDir' : '/tmp/beta_provision/working_dir/aggregator'
} }
</PARAM> </PARAM>
@ -252,6 +290,7 @@
<ARC to="promoteActionsRaw"/> <ARC to="promoteActionsRaw"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="promoteActionsRaw" type="SubmitHadoopJob"> <NODE name="promoteActionsRaw" type="SubmitHadoopJob">
<DESCRIPTION>create the RAW graph</DESCRIPTION> <DESCRIPTION>create the RAW graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -289,6 +328,7 @@
<ARC to="duplicateScan"/> <ARC to="duplicateScan"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="duplicateScan" type="SubmitHadoopJob"> <NODE name="duplicateScan" type="SubmitHadoopJob">
<DESCRIPTION>search for duplicates in the raw graph</DESCRIPTION> <DESCRIPTION>search for duplicates in the raw graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -314,6 +354,7 @@
<ARC to="promoteActionsIIS"/> <ARC to="promoteActionsIIS"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="promoteActionsIIS" type="SubmitHadoopJob"> <NODE name="promoteActionsIIS" type="SubmitHadoopJob">
<DESCRIPTION>create the INFERRED graph</DESCRIPTION> <DESCRIPTION>create the INFERRED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -351,6 +392,7 @@
<ARC to="dedupConsistency"/> <ARC to="dedupConsistency"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="dedupConsistency" type="SubmitHadoopJob"> <NODE name="dedupConsistency" type="SubmitHadoopJob">
<DESCRIPTION>mark duplicates as deleted and redistribute the relationships</DESCRIPTION> <DESCRIPTION>mark duplicates as deleted and redistribute the relationships</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -375,41 +417,6 @@
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="graphCleaning" type="SubmitHadoopJob">
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphInputPath' : 'consistentGraphPath',
'graphOutputPath': 'cleanedGraphPath',
'isLookupUrl': 'isLookUpUrl'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
'workingPath' : '/tmp/beta_provision/working_dir/clean'
}
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="SKIP_ENRICHMENT"/>
</ARCS>
</NODE>
<NODE name="SKIP_ENRICHMENT" type="Selection">
<DESCRIPTION>Do we skip the graph enrichment steps? (Yes to prepare the graph for the IIS)</DESCRIPTION>
<PARAMETERS>
<PARAM function="validValues(['YES', 'NO'])" managedBy="user" name="selection" required="true" type="string">NO</PARAM>
</PARAMETERS>
<ARCS>
<ARC name="YES" to="success"/>
<ARC name="NO" to="orcidPropagation"/>
</ARCS>
</NODE>
<NODE name="orcidPropagation" type="SubmitHadoopJob"> <NODE name="orcidPropagation" type="SubmitHadoopJob">
<DESCRIPTION>propagates ORCID among results linked by allowedsemrels semantic relationships</DESCRIPTION> <DESCRIPTION>propagates ORCID among results linked by allowedsemrels semantic relationships</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -417,7 +424,7 @@
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM> <PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string"> <PARAM managedBy="system" name="envParams" required="true" type="string">
{ {
'sourcePath' : 'cleanedGraphPath', 'sourcePath' : 'consistentGraphPath',
'outputPath': 'orcidGraphPath' 'outputPath': 'orcidGraphPath'
} }
</PARAM> </PARAM>
@ -435,6 +442,7 @@
<ARC to="bulkTagging"/> <ARC to="bulkTagging"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="bulkTagging" type="SubmitHadoopJob"> <NODE name="bulkTagging" type="SubmitHadoopJob">
<DESCRIPTION>mark results respecting some rules as belonging to communities</DESCRIPTION> <DESCRIPTION>mark results respecting some rules as belonging to communities</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -460,6 +468,7 @@
<ARC to="affiliationPropagation"/> <ARC to="affiliationPropagation"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="affiliationPropagation" type="SubmitHadoopJob"> <NODE name="affiliationPropagation" type="SubmitHadoopJob">
<DESCRIPTION>creates relashionships between results and organizations when the organizations are associated to institutional repositories</DESCRIPTION> <DESCRIPTION>creates relashionships between results and organizations when the organizations are associated to institutional repositories</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -484,6 +493,7 @@
<ARC to="communityOrganizationPropagation"/> <ARC to="communityOrganizationPropagation"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="communityOrganizationPropagation" type="SubmitHadoopJob"> <NODE name="communityOrganizationPropagation" type="SubmitHadoopJob">
<DESCRIPTION>marks as belonging to communities the result collected from datasources related to the organizations specified in the organizationCommunityMap</DESCRIPTION> <DESCRIPTION>marks as belonging to communities the result collected from datasources related to the organizations specified in the organizationCommunityMap</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -509,6 +519,7 @@
<ARC to="resultProjectPropagation"/> <ARC to="resultProjectPropagation"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="resultProjectPropagation" type="SubmitHadoopJob"> <NODE name="resultProjectPropagation" type="SubmitHadoopJob">
<DESCRIPTION>created relation between projects and results linked to other results trough allowedsemrel semantic relations linked to projects</DESCRIPTION> <DESCRIPTION>created relation between projects and results linked to other results trough allowedsemrel semantic relations linked to projects</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -534,6 +545,7 @@
<ARC to="communitySemrelPropagation"/> <ARC to="communitySemrelPropagation"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="communitySemrelPropagation" type="SubmitHadoopJob"> <NODE name="communitySemrelPropagation" type="SubmitHadoopJob">
<DESCRIPTION>tag as belonging to communitites result in in allowedsemrels relation with other result already linked to communities </DESCRIPTION> <DESCRIPTION>tag as belonging to communitites result in in allowedsemrels relation with other result already linked to communities </DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -560,6 +572,7 @@
<ARC to="countryPropagation"/> <ARC to="countryPropagation"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="countryPropagation" type="SubmitHadoopJob"> <NODE name="countryPropagation" type="SubmitHadoopJob">
<DESCRIPTION>associated to results colleced from allowedtypes and those in the whithelist the country of the organization(s) handling the datasource it is collected from </DESCRIPTION> <DESCRIPTION>associated to results colleced from allowedtypes and those in the whithelist the country of the organization(s) handling the datasource it is collected from </DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -584,10 +597,36 @@
</PARAM> </PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM> <PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS>
<ARC to="graphCleaning"/>
</ARCS>
</NODE>
<NODE name="graphCleaning" type="SubmitHadoopJob">
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphInputPath' : 'countryGraphPath',
'graphOutputPath': 'cleanedGraphPath',
'isLookupUrl': 'isLookUpUrl'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
'workingPath' : '/tmp/beta_provision/working_dir/clean'
}
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS> <ARCS>
<ARC to="blacklistRelations"/> <ARC to="blacklistRelations"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE name="blacklistRelations" type="SubmitHadoopJob"> <NODE name="blacklistRelations" type="SubmitHadoopJob">
<DESCRIPTION>removes blacklisted relations </DESCRIPTION> <DESCRIPTION>removes blacklisted relations </DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -595,7 +634,7 @@
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM> <PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string"> <PARAM managedBy="system" name="envParams" required="true" type="string">
{ {
'sourcePath' : 'countryGraphPath', 'sourcePath' : 'cleanedGraphPath',
'outputPath': 'blacklistedGraphPath' 'outputPath': 'blacklistedGraphPath'
} }
</PARAM> </PARAM>