workflow and parameter

This commit is contained in:
Miriam Baglioni 2021-06-14 10:08:55 +02:00
parent 75780fc636
commit 0f1acdf6b6
3 changed files with 131 additions and 0 deletions

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[
{
"paramName": "s",
"paramLongName": "sourcePath",
"paramDescription": "the source mdstore path",
"paramRequired": true
},
{
"paramName": "t",
"paramLongName": "targetPath",
"paramDescription": "the target mdstore path",
"paramRequired": true
},
{
"paramName": "m",
"paramLongName": "master",
"paramDescription": "the master name",
"paramRequired": true
}
]

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<configuration>
<property>
<name>jobTracker</name>
<value>yarnRM</value>
</property>
<property>
<name>nameNode</name>
<value>hdfs://nameservice1</value>
</property>
<property>
<name>oozie.use.system.libpath</name>
<value>true</value>
</property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>spark2</value>
</property>
<property>
<name>oozie.launcher.mapreduce.user.classpath.first</name>
<value>true</value>
</property>
<property>
<name>hive_metastore_uris</name>
<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
</property>
<property>
<name>spark2YarnHistoryServerAddress</name>
<value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
</property>
<property>
<name>spark2EventLogDir</name>
<value>/user/spark/spark2ApplicationHistory</value>
</property>
<property>
<name>spark2ExtraListeners</name>
<value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
</property>
<property>
<name>spark2SqlQueryExecutionListeners</name>
<value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
</property>
</configuration>

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<workflow-app name="read Crossref dump from HDFS" xmlns="uri:oozie:workflow:0.5">
<parameters>
<!-- <property>-->
<!-- <name>workingPath</name>-->
<!-- <description>the working dir base path</description>-->
<!-- </property>-->
<property>
<name>sparkDriverMemory</name>
<description>memory for driver process</description>
</property>
<property>
<name>sparkExecutorMemory</name>
<description>memory for individual executor</description>
</property>
<property>
<name>sparkExecutorCores</name>
<description>number of cores used by single executor</description>
</property>
</parameters>
<start to="generateCrossrefDataset"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="ReadCrossRefDump">
<java>
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<main-class>eu.dnetlib.doiboost.crossref.ExtractCrossrefRecords</main-class>
<arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
<arg>--workingPath</arg><arg>/data/doiboost/crossref/</arg>
<arg>--crossrefFileNameTarGz</arg><arg>crossref.tar.gz</arg>
</java>
<ok to="generateCrossrefDataset"/>
<error to="Kill"/>
</action>
<action name="generateCrossrefDataset">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn-cluster</master>
<mode>cluster</mode>
<name>SparkCreateCrossredDataset</name>
<class>eu.dnetlib.doiboost.crossref.GenerateCrossrefDatasetSpark</class>
<jar>dhp-doiboost-${projectVersion}.jar</jar>
<spark-opts>
--conf spark.dynamicAllocation.enabled=true
--conf spark.dynamicAllocation.maxExecutors=20
--executor-memory=6G
--driver-memory=7G
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
</spark-opts>
<arg>--master</arg><arg>yarn-cluster</arg>
<arg>--sourcePath</arg><arg>/data/doiboost/crossref/filess</arg>
<arg>--targetPath</arg><arg>/tmp/miriam/crossref/crossrefDataset</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>
</action>
<end name="End"/>
</workflow-app>