dnet-hadoop/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/CrossrefImporter.java

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2020-04-01 14:12:33 +02:00
package eu.dnetlib.doiboost;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import org.apache.commons.io.IOUtils;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.SequenceFile;
import org.apache.hadoop.io.Text;
import org.apache.http.HttpHost;
public class CrossrefImporter {
public static void main(String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(IOUtils.toString(CrossrefImporter.class.getResourceAsStream("/eu/dnetlib/dhp/doiboost/import_from_es.json")));
parser.parseArgument(args);
System.out.println(parser.get("targetPath"));
final String hdfsuri = parser.get("namenode");
System.out.println(hdfsuri);
Path hdfswritepath = new Path(parser.get("targetPath"));
// ====== Init HDFS File System Object
Configuration conf = new Configuration();
// Set FileSystem URI
conf.set("fs.defaultFS", hdfsuri);
// Because of Maven
conf.set("fs.hdfs.impl", org.apache.hadoop.hdfs.DistributedFileSystem.class.getName());
conf.set("fs.file.impl", org.apache.hadoop.fs.LocalFileSystem.class.getName());
ESClient client = new ESClient("ip-90-147-167-25.ct1.garrservices.it", "crossref");
try (SequenceFile.Writer writer = SequenceFile.createWriter(conf,
SequenceFile.Writer.file(hdfswritepath), SequenceFile.Writer.keyClass(IntWritable.class),
SequenceFile.Writer.valueClass(Text.class))) {
int i = 0;
long start= System.currentTimeMillis();
long end = 0;
final IntWritable key = new IntWritable(i);
final Text value = new Text();
while (client.hasNext()) {
key.set(i++);
value.set(client.next());
writer.append(key, value);
if (i % 100000 == 0) {
end = System.currentTimeMillis();
final float time = (end - start) / 1000;
System.out.println(String.format("Imported %d records last 100000 imported in %f seconds", i, time));
start = System.currentTimeMillis();
}
}
}
}
}