initial commit
This commit is contained in:
commit
67e74255ac
|
@ -0,0 +1,2 @@
|
|||
.idea/
|
||||
target/
|
|
@ -0,0 +1,27 @@
|
|||
FROM maven:3.8.6-eclipse-temurin-17-focal
|
||||
|
||||
RUN apt-get update
|
||||
RUN apt-get install gpg -y
|
||||
|
||||
ARG MAVEN_ACCOUNT_USR
|
||||
ARG MAVEN_ACCOUNT_PSW
|
||||
ARG REVISION
|
||||
ARG MAVEN_GPG_PASSPHRASE
|
||||
ARG MAVEN_GPG_KEYNAME
|
||||
ARG PROFILE
|
||||
ENV gpg_keyname=$MAVEN_GPG_KEYNAME
|
||||
ENV gpg_passphrase=$MAVEN_GPG_PASSPHRASE
|
||||
ENV server_username=$MAVEN_ACCOUNT_USR
|
||||
ENV server_password=$MAVEN_ACCOUNT_PSW
|
||||
|
||||
COPY settings.xml /root/.m2/settings.xml
|
||||
COPY keypair.asc /tmp/keypair.asc
|
||||
RUN if [ "$PROFILE" = "ossrh" ]; then \
|
||||
gpg --batch --import /tmp/keypair.asc; \
|
||||
fi
|
||||
|
||||
WORKDIR /build/
|
||||
|
||||
COPY . .
|
||||
|
||||
RUN mvn -Drevision=${REVISION} -P${PROFILE} clean deploy
|
|
@ -0,0 +1,21 @@
|
|||
MIT License
|
||||
|
||||
Copyright (c) 2019-2020 OpenAIRE AMKE
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
|
@ -0,0 +1,428 @@
|
|||
THIRD-PARTY SOFTWARE NOTICES AND INFORMATION
|
||||
Do Not Translate or Localize
|
||||
|
||||
This component uses third party material from the projects listed below.
|
||||
The original copyright notice and the license under which CITE
|
||||
received such third party material are set forth below. CITE
|
||||
reserves all other rights not expressly granted, whether by
|
||||
implication, estoppel or otherwise.
|
||||
|
||||
In the event that we accidentally failed to list a required notice, please
|
||||
bring it to our attention. Post an issue or email us: reception@cite.gr
|
||||
|
||||
1. spring-boot-starter-parent
|
||||
2. spring-boot-starter-web
|
||||
3. dataverse-client-java
|
||||
4. repositorydepositbase
|
||||
|
||||
spring-boot-starter-parent NOTICES, INFORMATION, AND LICENSE BEGIN HERE
|
||||
=========================================
|
||||
Apache License
|
||||
Version 2.0, January 2004
|
||||
http://www.apache.org/licenses/
|
||||
|
||||
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||
|
||||
1. Definitions.
|
||||
|
||||
"License" shall mean the terms and conditions for use, reproduction,
|
||||
and distribution as defined by Sections 1 through 9 of this document.
|
||||
|
||||
"Licensor" shall mean the copyright owner or entity authorized by
|
||||
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|
||||
|
||||
"Legal Entity" shall mean the union of the acting entity and all
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
"You" (or "Your") shall mean an individual or Legal Entity
|
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|
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|
||||
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|
||||
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|
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|
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|
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|
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|
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|
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"Work" shall mean the work of authorship, whether in Source or
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(c) You must retain, in the Source form of any Derivative Works
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excluding those notices that do not pertain to any part of
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|
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Notwithstanding the above, nothing herein shall supersede or modify
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PARTICULAR PURPOSE. You are solely responsible for determining the
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|
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|
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|
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END OF TERMS AND CONDITIONS
|
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|
||||
APPENDIX: How to apply the Apache License to your work.
|
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|
||||
To apply the Apache License to your work, attach the following
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Unless required by applicable law or agreed to in writing, software
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
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See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
=========================================
|
||||
END OF spring-boot-starter-parent NOTICES, INFORMATION, AND LICENSE
|
||||
|
||||
spring-boot-starter-web NOTICES, INFORMATION, AND LICENSE BEGIN HERE
|
||||
=========================================
|
||||
Apache License
|
||||
Version 2.0, January 2004
|
||||
http://www.apache.org/licenses/
|
||||
|
||||
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||
|
||||
1. Definitions.
|
||||
|
||||
"License" shall mean the terms and conditions for use, reproduction,
|
||||
and distribution as defined by Sections 1 through 9 of this document.
|
||||
|
||||
"Licensor" shall mean the copyright owner or entity authorized by
|
||||
the copyright owner that is granting the License.
|
||||
|
||||
"Legal Entity" shall mean the union of the acting entity and all
|
||||
other entities that control, are controlled by, or are under common
|
||||
control with that entity. For the purposes of this definition,
|
||||
"control" means (i) the power, direct or indirect, to cause the
|
||||
direction or management of such entity, whether by contract or
|
||||
otherwise, or (ii) ownership of fifty percent (50%) or more of the
|
||||
outstanding shares, or (iii) beneficial ownership of such entity.
|
||||
|
||||
"You" (or "Your") shall mean an individual or Legal Entity
|
||||
exercising permissions granted by this License.
|
||||
|
||||
"Source" form shall mean the preferred form for making modifications,
|
||||
including but not limited to software source code, documentation
|
||||
source, and configuration files.
|
||||
|
||||
"Object" form shall mean any form resulting from mechanical
|
||||
transformation or translation of a Source form, including but
|
||||
not limited to compiled object code, generated documentation,
|
||||
and conversions to other media types.
|
||||
|
||||
"Work" shall mean the work of authorship, whether in Source or
|
||||
Object form, made available under the License, as indicated by a
|
||||
copyright notice that is included in or attached to the work
|
||||
(an example is provided in the Appendix below).
|
||||
|
||||
"Derivative Works" shall mean any work, whether in Source or Object
|
||||
form, that is based on (or derived from) the Work and for which the
|
||||
editorial revisions, annotations, elaborations, or other modifications
|
||||
represent, as a whole, an original work of authorship. For the purposes
|
||||
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|
||||
separable from, or merely link (or bind by name) to the interfaces of,
|
||||
the Work and Derivative Works thereof.
|
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|
||||
"Contribution" shall mean any work of authorship, including
|
||||
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|
||||
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|
||||
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|
||||
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|
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|
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|
||||
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|
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|
||||
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||||
|
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|
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|
||||
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|
||||
2. Grant of Copyright License. Subject to the terms and conditions of
|
||||
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|
||||
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|
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||||
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|
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||||
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||||
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||||
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||||
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|
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|
||||
by You to the Licensor shall be under the terms and conditions of
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||||
this License, without any additional terms or conditions.
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||||
Notwithstanding the above, nothing herein shall supersede or modify
|
||||
the terms of any separate license agreement you may have executed
|
||||
with Licensor regarding such Contributions.
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||||
|
||||
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|
||||
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|
||||
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|
||||
origin of the Work and reproducing the content of the NOTICE file.
|
||||
|
||||
7. Disclaimer of Warranty. Unless required by applicable law or
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||||
agreed to in writing, Licensor provides the Work (and each
|
||||
Contributor provides its Contributions) on an "AS IS" BASIS,
|
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
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implied, including, without limitation, any warranties or conditions
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of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
|
||||
PARTICULAR PURPOSE. You are solely responsible for determining the
|
||||
appropriateness of using or redistributing the Work and assume any
|
||||
risks associated with Your exercise of permissions under this License.
|
||||
|
||||
8. Limitation of Liability. In no event and under no legal theory,
|
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whether in tort (including negligence), contract, or otherwise,
|
||||
unless required by applicable law (such as deliberate and grossly
|
||||
negligent acts) or agreed to in writing, shall any Contributor be
|
||||
liable to You for damages, including any direct, indirect, special,
|
||||
incidental, or consequential damages of any character arising as a
|
||||
result of this License or out of the use or inability to use the
|
||||
Work (including but not limited to damages for loss of goodwill,
|
||||
work stoppage, computer failure or malfunction, or any and all
|
||||
other commercial damages or losses), even if such Contributor
|
||||
has been advised of the possibility of such damages.
|
||||
|
||||
9. Accepting Warranty or Additional Liability. While redistributing
|
||||
the Work or Derivative Works thereof, You may choose to offer,
|
||||
and charge a fee for, acceptance of support, warranty, indemnity,
|
||||
or other liability obligations and/or rights consistent with this
|
||||
License. However, in accepting such obligations, You may act only
|
||||
on Your own behalf and on Your sole responsibility, not on behalf
|
||||
of any other Contributor, and only if You agree to indemnify,
|
||||
defend, and hold each Contributor harmless for any liability
|
||||
incurred by, or claims asserted against, such Contributor by reason
|
||||
of your accepting any such warranty or additional liability.
|
||||
|
||||
END OF TERMS AND CONDITIONS
|
||||
|
||||
APPENDIX: How to apply the Apache License to your work.
|
||||
|
||||
To apply the Apache License to your work, attach the following
|
||||
boilerplate notice, with the fields enclosed by brackets "[]"
|
||||
replaced with your own identifying information. (Don't include
|
||||
the brackets!) The text should be enclosed in the appropriate
|
||||
comment syntax for the file format. We also recommend that a
|
||||
file or class name and description of purpose be included on the
|
||||
same "printed page" as the copyright notice for easier
|
||||
identification within third-party archives.
|
||||
|
||||
Copyright [yyyy] [name of copyright owner]
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
=========================================
|
||||
END OF spring-boot-starter-web NOTICES, INFORMATION, AND LICENSE
|
|
@ -0,0 +1,183 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<parent>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-parent</artifactId>
|
||||
<version>2.5.2</version>
|
||||
<relativePath/>
|
||||
</parent>
|
||||
|
||||
<groupId>gr.cite.opendmp</groupId>
|
||||
<artifactId>repositorydepositdataverse</artifactId>
|
||||
<version>${revision}</version>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<name>OpenDMP Repository Deposit Dataverse</name>
|
||||
<description>OpenDMP Repository Deposit Dataverse</description>
|
||||
<url>https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-dataverse</url>
|
||||
<licenses>
|
||||
<license>
|
||||
<name>MIT License</name>
|
||||
<url>https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-dataverse/src/branch/master/LICENSE.txt</url>
|
||||
<distribution>repo</distribution>
|
||||
</license>
|
||||
</licenses>
|
||||
<developers>
|
||||
<developer>
|
||||
<name>CITE S.A.</name>
|
||||
<email>maven-central@cite.gr</email>
|
||||
<organization>CITE S.A.</organization>
|
||||
<organizationUrl>https://www.cite.gr</organizationUrl>
|
||||
</developer>
|
||||
</developers>
|
||||
<scm>
|
||||
<connection>scm:git:git://code-repo.d4science.org</connection>
|
||||
<developerConnection>scm:git:ssh://code-repo.d4science.org</developerConnection>
|
||||
<url>https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-dataverse</url>
|
||||
</scm>
|
||||
|
||||
<properties>
|
||||
<revision>1.0.0-SNAPSHOT</revision>
|
||||
</properties>
|
||||
|
||||
<repositories>
|
||||
<repository>
|
||||
<id>jitpack.io</id>
|
||||
<url>https://jitpack.io</url>
|
||||
</repository>
|
||||
</repositories>
|
||||
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-web</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>gr.cite.opendmp</groupId>
|
||||
<artifactId>repositorydepositbase</artifactId>
|
||||
<version>1.0.0</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>com.github.IQSS</groupId>
|
||||
<artifactId>dataverse-client-java</artifactId>
|
||||
<version>master-dv14-12-compatible-ge2dc343-7</version>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
|
||||
<build>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<artifactId>maven-assembly-plugin</artifactId>
|
||||
<executions>
|
||||
<execution>
|
||||
<phase>package</phase>
|
||||
<goals>
|
||||
<goal>single</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
<configuration>
|
||||
<archive>
|
||||
<manifest>
|
||||
<mainClass>eu.eudat.EuDatApplication</mainClass>
|
||||
</manifest>
|
||||
</archive>
|
||||
<descriptorRefs>
|
||||
<descriptorRef>jar-with-dependencies</descriptorRef>
|
||||
</descriptorRefs>
|
||||
</configuration>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</build>
|
||||
|
||||
<profiles>
|
||||
<profile>
|
||||
<id>ossrh</id>
|
||||
<distributionManagement>
|
||||
<snapshotRepository>
|
||||
<id>ossrh</id>
|
||||
<url>https://s01.oss.sonatype.org/content/repositories/snapshots</url>
|
||||
</snapshotRepository>
|
||||
<repository>
|
||||
<id>ossrh</id>
|
||||
<url>https://s01.oss.sonatype.org/service/local/staging/deploy/maven2</url>
|
||||
</repository>
|
||||
</distributionManagement>
|
||||
<build>
|
||||
<plugins>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-install-plugin</artifactId>
|
||||
<version>2.5.2</version>
|
||||
<configuration>
|
||||
<createChecksum>true</createChecksum>
|
||||
</configuration>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-gpg-plugin</artifactId>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>sign-artifacts</id>
|
||||
<phase>verify</phase>
|
||||
<goals>
|
||||
<goal>sign</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
<plugin>
|
||||
<groupId>org.apache.maven.plugins</groupId>
|
||||
<artifactId>maven-jar-plugin</artifactId>
|
||||
<version>3.2.2</version>
|
||||
<executions>
|
||||
<execution>
|
||||
<id>javadoc-generation</id>
|
||||
<phase>package</phase>
|
||||
<goals>
|
||||
<goal>jar</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<classifier>javadoc</classifier>
|
||||
<excludes>
|
||||
<exclude>gr/**</exclude>
|
||||
</excludes>
|
||||
<includes>
|
||||
<include>README.txt</include>
|
||||
</includes>
|
||||
<archive>
|
||||
<addMavenDescriptor>false</addMavenDescriptor>
|
||||
</archive>
|
||||
</configuration>
|
||||
</execution>
|
||||
<execution>
|
||||
<id>sources-generation</id>
|
||||
<phase>package</phase>
|
||||
<goals>
|
||||
<goal>jar</goal>
|
||||
</goals>
|
||||
<configuration>
|
||||
<classifier>sources</classifier>
|
||||
<excludes>
|
||||
<exclude>gr/**</exclude>
|
||||
</excludes>
|
||||
<includes>
|
||||
<include>README.txt</include>
|
||||
</includes>
|
||||
<archive>
|
||||
<addMavenDescriptor>false</addMavenDescriptor>
|
||||
</archive>
|
||||
</configuration>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</build>
|
||||
</profile>
|
||||
</profiles>
|
||||
|
||||
</project>
|
|
@ -0,0 +1,18 @@
|
|||
<settings>
|
||||
<servers>
|
||||
<server>
|
||||
<id>ossrh</id>
|
||||
<username>${server_username}</username>
|
||||
<password>${server_password}</password>
|
||||
</server>
|
||||
</servers>
|
||||
<profiles>
|
||||
<profile>
|
||||
<id>ossrh</id>
|
||||
<properties>
|
||||
<gpg.passphrase>${gpg_passphrase}</gpg.passphrase>
|
||||
<gpg.keyname>${gpg_keyname}</gpg.keyname>
|
||||
</properties>
|
||||
</profile>
|
||||
</profiles>
|
||||
</settings>
|
|
@ -0,0 +1,5 @@
|
|||
package eu.eudat.depositinterface.dataverserepository.config;
|
||||
|
||||
public interface ConfigLoader {
|
||||
DataverseConfig getDataverseConfig();
|
||||
}
|
|
@ -0,0 +1,45 @@
|
|||
package eu.eudat.depositinterface.dataverserepository.config;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
|
||||
@Service("dataverseConfigLoader")
|
||||
public class ConfigLoaderImpl implements ConfigLoader{
|
||||
private static final Logger logger = LoggerFactory.getLogger(ConfigLoaderImpl.class);
|
||||
private static final ObjectMapper mapper = new ObjectMapper();
|
||||
|
||||
private DataverseConfig dataverseConfig;
|
||||
|
||||
@Autowired
|
||||
private Environment environment;
|
||||
|
||||
@Override
|
||||
public DataverseConfig getDataverseConfig() {
|
||||
if(dataverseConfig == null){
|
||||
try{
|
||||
dataverseConfig = mapper.readValue(getStreamFromPath(environment.getProperty("configuration.dataverse")), DataverseConfig.class);
|
||||
} catch (IOException e) {
|
||||
logger.error(e.getLocalizedMessage(), e);
|
||||
}
|
||||
}
|
||||
return dataverseConfig;
|
||||
}
|
||||
|
||||
private InputStream getStreamFromPath(String filePath) {
|
||||
try {
|
||||
return new FileInputStream(filePath);
|
||||
} catch (FileNotFoundException e) {
|
||||
logger.info("loading from classpath");
|
||||
return getClass().getClassLoader().getResourceAsStream(filePath);
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,106 @@
|
|||
package eu.eudat.depositinterface.dataverserepository.config;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||
|
||||
public class DataverseConfig {
|
||||
private enum DepositType {
|
||||
SystemDeposit(0), UserDeposit(1), BothWaysDeposit(2);
|
||||
|
||||
private final int value;
|
||||
|
||||
DepositType(int value) {
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
public int getValue() {
|
||||
return value;
|
||||
}
|
||||
|
||||
public static DepositType fromInteger(int value) {
|
||||
switch (value) {
|
||||
case 0:
|
||||
return SystemDeposit;
|
||||
case 1:
|
||||
return UserDeposit;
|
||||
case 2:
|
||||
return BothWaysDeposit;
|
||||
default:
|
||||
throw new RuntimeException("Unsupported Deposit Type");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@JsonProperty("depositType")
|
||||
private int depositType;
|
||||
@JsonProperty("repositoryId")
|
||||
private String repositoryId;
|
||||
@JsonProperty("apiToken")
|
||||
private String apiToken;
|
||||
@JsonProperty("repositoryUrl")
|
||||
private String repositoryUrl;
|
||||
@JsonProperty("repositoryRecordUrl")
|
||||
private String repositoryRecordUrl;
|
||||
@JsonProperty("server")
|
||||
private String server;
|
||||
@JsonProperty("parentDataverseAlias")
|
||||
private String parentDataverseAlias;
|
||||
|
||||
public int getDepositType() {
|
||||
return depositType;
|
||||
}
|
||||
public void setDepositType(int depositType) {
|
||||
this.depositType = depositType;
|
||||
}
|
||||
|
||||
public String getRepositoryId() {
|
||||
return repositoryId;
|
||||
}
|
||||
public void setRepositoryId(String repositoryId) {
|
||||
this.repositoryId = repositoryId;
|
||||
}
|
||||
|
||||
public String getApiToken() {
|
||||
return apiToken;
|
||||
}
|
||||
public void setApiToken(String apiToken) {
|
||||
this.apiToken = apiToken;
|
||||
}
|
||||
|
||||
public String getRepositoryUrl() {
|
||||
return repositoryUrl;
|
||||
}
|
||||
public void setRepositoryUrl(String repositoryUrl) {
|
||||
this.repositoryUrl = repositoryUrl;
|
||||
}
|
||||
|
||||
public String getRepositoryRecordUrl() {
|
||||
return repositoryRecordUrl;
|
||||
}
|
||||
public void setRepositoryRecordUrl(String repositoryRecordUrl) {
|
||||
this.repositoryRecordUrl = repositoryRecordUrl;
|
||||
}
|
||||
|
||||
public String getServer() {
|
||||
return server;
|
||||
}
|
||||
public void setServer(String server) {
|
||||
this.server = server;
|
||||
}
|
||||
|
||||
public String getParentDataverseAlias() {
|
||||
return parentDataverseAlias;
|
||||
}
|
||||
public void setParentDataverseAlias(String parentDataverseAlias) {
|
||||
this.parentDataverseAlias = parentDataverseAlias;
|
||||
}
|
||||
|
||||
public RepositoryDepositConfiguration toRepoConfig() {
|
||||
RepositoryDepositConfiguration config = new RepositoryDepositConfiguration();
|
||||
config.setDepositType(this.depositType);
|
||||
config.setRepositoryId(this.repositoryId);
|
||||
config.setRepositoryUrl(this.repositoryUrl);
|
||||
config.setRepositoryRecordUrl(this.repositoryRecordUrl);
|
||||
return config;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,200 @@
|
|||
package eu.eudat.depositinterface.dataverserepository.interfaces;
|
||||
|
||||
import com.fasterxml.jackson.databind.JsonNode;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.researchspace.dataverse.api.v1.DataverseAPI;
|
||||
import com.researchspace.dataverse.api.v1.DataverseConfig;
|
||||
import com.researchspace.dataverse.entities.*;
|
||||
import com.researchspace.dataverse.entities.facade.DatasetAuthor;
|
||||
import com.researchspace.dataverse.entities.facade.DatasetContact;
|
||||
import com.researchspace.dataverse.entities.facade.DatasetDescription;
|
||||
import com.researchspace.dataverse.entities.facade.DatasetFacade;
|
||||
import com.researchspace.dataverse.http.DataverseAPIImpl;
|
||||
import eu.eudat.depositinterface.dataverserepository.config.ConfigLoader;
|
||||
import eu.eudat.depositinterface.models.DMPDepositModel;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDeposit;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||
import org.json.JSONObject;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.http.*;
|
||||
import org.springframework.stereotype.Component;
|
||||
import org.springframework.util.LinkedMultiValueMap;
|
||||
import org.springframework.util.MultiValueMap;
|
||||
import org.springframework.web.client.RestTemplate;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.io.OutputStream;
|
||||
import java.net.MalformedURLException;
|
||||
import java.net.URL;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.nio.file.Files;
|
||||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import static com.researchspace.dataverse.entities.Version.MAJOR;
|
||||
import static com.researchspace.dataverse.entities.Version.MINOR;
|
||||
|
||||
@Component
|
||||
public class DataverseDeposit implements RepositoryDeposit {
|
||||
private static final Logger logger = LoggerFactory.getLogger(DataverseDeposit.class);
|
||||
private static final ObjectMapper objectMapper = new ObjectMapper();
|
||||
|
||||
private DataverseAPI api;
|
||||
private boolean isApiSet;
|
||||
|
||||
private ConfigLoader configLoader;
|
||||
private Environment environment;
|
||||
|
||||
@Autowired
|
||||
public DataverseDeposit(ConfigLoader configLoader, Environment environment){
|
||||
this.configLoader = configLoader;
|
||||
this.environment = environment;
|
||||
this.isApiSet = false;
|
||||
}
|
||||
|
||||
private void setDataverseApi() throws MalformedURLException {
|
||||
if(!this.isApiSet) {
|
||||
this.api = new DataverseAPIImpl();
|
||||
eu.eudat.depositinterface.dataverserepository.config.DataverseConfig jsonConfig = this.configLoader.getDataverseConfig();
|
||||
DataverseConfig config = new DataverseConfig(new URL(jsonConfig.getServer()), jsonConfig.getApiToken(), jsonConfig.getParentDataverseAlias());
|
||||
api.configure(config);
|
||||
this.isApiSet = true;
|
||||
}
|
||||
}
|
||||
|
||||
@Override
|
||||
public String deposit(DMPDepositModel dmpDepositModel, String repositoryAccessToken) throws Exception {
|
||||
|
||||
if(!this.isApiSet)
|
||||
this.setDataverseApi();
|
||||
|
||||
String doi;
|
||||
DatasetFacade dataset = DatasetFacade.builder()
|
||||
.title(dmpDepositModel.getLabel())
|
||||
.authors(dmpDepositModel.getUsers().stream().map(x -> DatasetAuthor.builder().authorName(x.getUser().getName()).build()).collect(Collectors.toList()))
|
||||
.contacts(dmpDepositModel.getUsers().stream().map(x -> DatasetContact.builder().datasetContactEmail(x.getUser().getEmail()).build()).collect(Collectors.toList()))
|
||||
.subject("Other")
|
||||
.description(DatasetDescription.builder().description(dmpDepositModel.getDescription()).build())
|
||||
.languages(new ArrayList<>())
|
||||
.depositor("")
|
||||
.build();
|
||||
|
||||
if(dmpDepositModel.getPreviousDOI() == null || dmpDepositModel.getPreviousDOI().isEmpty()){
|
||||
Identifier id = this.api.getDataverseOperations().createDataset(dataset, this.configLoader.getDataverseConfig().getParentDataverseAlias());
|
||||
|
||||
doi = this.api.getDatasetOperations().getDataset(id).getDoiId().orElse(null);
|
||||
|
||||
this.uploadFiles(dmpDepositModel, doi);
|
||||
|
||||
this.api.getDatasetOperations().publishDataset(id, MAJOR);
|
||||
}
|
||||
else{
|
||||
Map<String, Object> datasetJson = this.getDatasetIdentifier(dmpDepositModel.getPreviousDOI());
|
||||
Identifier id = new Identifier();
|
||||
id.setId(((Integer) datasetJson.get("id")).longValue());
|
||||
JsonNode jsonNode = this.objectMapper.readTree(new JSONObject(datasetJson).toString());
|
||||
List<JsonNode> files = jsonNode.findValues("dataFile");
|
||||
for(JsonNode file: files){
|
||||
int fileId = file.get("id").asInt();
|
||||
this.deleteFile(fileId);
|
||||
}
|
||||
|
||||
this.uploadFiles(dmpDepositModel, dmpDepositModel.getPreviousDOI());
|
||||
|
||||
this.api.getDatasetOperations().updateDataset(dataset, id);
|
||||
DataverseResponse<PublishedDataset> publishedDataset = this.api.getDatasetOperations().publishDataset(id, MAJOR);
|
||||
doi = publishedDataset.getData().getAuthority() + "/" + publishedDataset.getData().getIdentifier();
|
||||
}
|
||||
|
||||
|
||||
return doi;
|
||||
|
||||
}
|
||||
|
||||
private void deleteFile(int fileId){
|
||||
HttpHeaders headers = this.createBasicAuthHeaders(this.configLoader.getDataverseConfig().getApiToken(), "");
|
||||
String serverUrl = this.configLoader.getDataverseConfig().getServer() + "/dvn/api/data-deposit/v1.1/swordv2/edit-media/file/" + fileId;
|
||||
RestTemplate restTemplate = new RestTemplate();
|
||||
restTemplate.exchange(serverUrl, HttpMethod.DELETE, new HttpEntity<>(headers), Object.class);
|
||||
}
|
||||
|
||||
private HttpHeaders createBasicAuthHeaders(String username, String password) {
|
||||
return new HttpHeaders() {{
|
||||
String auth = username + ":" + password;
|
||||
byte[] encodedAuth = Base64.getEncoder().encode(
|
||||
auth.getBytes(StandardCharsets.UTF_8));
|
||||
String authHeader = "Basic " + new String(encodedAuth);
|
||||
set("Authorization", authHeader);
|
||||
}};
|
||||
}
|
||||
|
||||
private void uploadFiles(DMPDepositModel dmpDepositModel, String doi) throws IOException {
|
||||
this.uploadFile(dmpDepositModel.getPdfFileName(), dmpDepositModel.getPdfFile(), doi);
|
||||
|
||||
String contentDisposition = dmpDepositModel.getRdaJson().getHeaders().get("Content-Disposition").get(0);
|
||||
String jsonFileName = contentDisposition.substring(contentDisposition.lastIndexOf('=') + 1);
|
||||
File rdaJson = new File(this.environment.getProperty("storage.temp") + jsonFileName);
|
||||
OutputStream output = new FileOutputStream(rdaJson);
|
||||
try {
|
||||
output.write(Objects.requireNonNull(dmpDepositModel.getRdaJson().getBody()));
|
||||
output.flush();
|
||||
output.close();
|
||||
} catch (IOException e) {
|
||||
logger.error(e.getMessage(), e);
|
||||
}
|
||||
this.uploadFile(jsonFileName, rdaJson, doi);
|
||||
Files.deleteIfExists(rdaJson.toPath());
|
||||
|
||||
if(dmpDepositModel.getSupportingFilesZip() != null) {
|
||||
this.uploadFile(dmpDepositModel.getSupportingFilesZip().getName(), dmpDepositModel.getSupportingFilesZip(), doi);
|
||||
}
|
||||
}
|
||||
|
||||
private Map<String, Object> getDatasetIdentifier(String previousDOI) {
|
||||
HttpHeaders headers = new HttpHeaders();
|
||||
headers.set("X-Dataverse-key", this.configLoader.getDataverseConfig().getApiToken());
|
||||
String serverUrl = this.configLoader.getDataverseConfig().getServer() + "/api/datasets/:persistentId?persistentId=doi:" + previousDOI;
|
||||
RestTemplate restTemplate = new RestTemplate();
|
||||
return (Map<String, Object>) restTemplate.exchange(serverUrl, HttpMethod.GET, new HttpEntity<>(headers), Map.class).getBody().get("data");
|
||||
}
|
||||
|
||||
private void uploadFile(String filename, File file, String doi) throws IOException {
|
||||
HttpHeaders headers = new HttpHeaders();
|
||||
headers.setContentType(MediaType.MULTIPART_FORM_DATA);
|
||||
headers.set("X-Dataverse-key", this.configLoader.getDataverseConfig().getApiToken());
|
||||
MultiValueMap<String, String> fileMap = new LinkedMultiValueMap<>();
|
||||
ContentDisposition contentDisposition = ContentDisposition
|
||||
.builder("form-data")
|
||||
.name("file")
|
||||
.filename(filename)
|
||||
.build();
|
||||
fileMap.add(HttpHeaders.CONTENT_DISPOSITION, contentDisposition.toString());
|
||||
HttpEntity<byte[]> fileEntity = new HttpEntity<>(Files.readAllBytes(file.toPath()), fileMap);
|
||||
MultiValueMap<String, Object> body = new LinkedMultiValueMap<>();
|
||||
body.add("file", fileEntity);
|
||||
body.add("jsonData", "{\"restrict\":\"false\", \"tabIngest\":\"false\"}");
|
||||
HttpEntity<MultiValueMap<String, Object>> requestEntity
|
||||
= new HttpEntity<>(body, headers);
|
||||
|
||||
String serverUrl = this.configLoader.getDataverseConfig().getServer() + "/api/datasets/:persistentId/add?persistentId=doi:" + doi;
|
||||
|
||||
RestTemplate restTemplate = new RestTemplate();
|
||||
ResponseEntity<Object> resp = restTemplate.postForEntity(serverUrl, requestEntity, Object.class);
|
||||
}
|
||||
|
||||
@Override
|
||||
public RepositoryDepositConfiguration getConfiguration() {
|
||||
eu.eudat.depositinterface.dataverserepository.config.DataverseConfig dataverseConfig = this.configLoader.getDataverseConfig();
|
||||
return dataverseConfig.toRepoConfig();
|
||||
}
|
||||
|
||||
@Override
|
||||
public String authenticate(String code) {
|
||||
return null;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,2 @@
|
|||
storage.temp=${DATAVERSE_TMP}
|
||||
configuration.dataverse=${DATAVERSE_CONF}
|
|
@ -0,0 +1,9 @@
|
|||
{
|
||||
"depositType": 0,
|
||||
"repositoryId": "Dataverse",
|
||||
"apiToken": "265c1640-8aa7-4ab0-85db-5a79be7d6a6c",
|
||||
"repositoryUrl": "https://demo.dataverse.org/api/",
|
||||
"repositoryRecordUrl": "https://demo.dataverse.org/dataset.xhtml?persistentId=doi:",
|
||||
"server": "https://demo.dataverse.org",
|
||||
"parentDataverseAlias": "test1000"
|
||||
}
|
Loading…
Reference in New Issue