initial commit
This commit is contained in:
commit
122da0b856
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@ -0,0 +1,2 @@
|
||||||
|
.idea/
|
||||||
|
target/
|
|
@ -0,0 +1,18 @@
|
||||||
|
####################################### Build stage #######################################
|
||||||
|
FROM maven:3.6.3-openjdk-11-slim AS build-stage
|
||||||
|
|
||||||
|
COPY . /build/
|
||||||
|
WORKDIR /build/
|
||||||
|
RUN mvn clean package -DskipTests
|
||||||
|
|
||||||
|
ARG CREPO_BINARIES_REPO_URL
|
||||||
|
ARG CREPO_BINARIES_CREDENTIAL
|
||||||
|
ARG BUILD_VERSION
|
||||||
|
ENV CREPO_BINARIES_REPO_URL=$CREPO_BINARIES_REPO_URL
|
||||||
|
ENV CREPO_BINARIES_CREDENTIAL=$CREPO_BINARIES_CREDENTIAL
|
||||||
|
ENV BUILD_VERSION=$BUILD_VERSION
|
||||||
|
|
||||||
|
RUN curl --location --request PUT "${CREPO_BINARIES_REPO_URL}opendmp/repository-jars/ckan/ckan-deposit-${BUILD_VERSION}.jar" \
|
||||||
|
--header "Authorization: Basic ${CREPO_BINARIES_CREDENTIAL}" \
|
||||||
|
--header "Content-Type: application/json" \
|
||||||
|
--data-binary "@/build/target/repositorydepositckan-1.0.0-SNAPSHOT.jar"
|
|
@ -0,0 +1,21 @@
|
||||||
|
MIT License
|
||||||
|
|
||||||
|
Copyright (c) 2019-2020 OpenAIRE AMKE
|
||||||
|
|
||||||
|
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||||
|
of this software and associated documentation files (the "Software"), to deal
|
||||||
|
in the Software without restriction, including without limitation the rights
|
||||||
|
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||||
|
copies of the Software, and to permit persons to whom the Software is
|
||||||
|
furnished to do so, subject to the following conditions:
|
||||||
|
|
||||||
|
The above copyright notice and this permission notice shall be included in all
|
||||||
|
copies or substantial portions of the Software.
|
||||||
|
|
||||||
|
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||||
|
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||||
|
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||||
|
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||||
|
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||||
|
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||||
|
SOFTWARE.
|
|
@ -0,0 +1,25 @@
|
||||||
|
# Using Ckan repository with Argos
|
||||||
|
|
||||||
|
The repository-deposit-ckan module implements the [https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-base](https://) interface for the Ckan repository
|
||||||
|
which has the DOI extension.
|
||||||
|
|
||||||
|
## Setup
|
||||||
|
|
||||||
|
After creating the jar from the project, environment variables should be set since they are used in the application.properties
|
||||||
|
1) STORAGE_TMP_CKAN - a temporary storage needed
|
||||||
|
2) CONFIGURATION_CKAN - path to json file which includes the configuration for the repository
|
||||||
|
|
||||||
|
### JSON configuration file
|
||||||
|
|
||||||
|
The following fields should be set:<br>
|
||||||
|
**depositType** - an integer representing how the dmp user can deposit in the repository,<br>
|
||||||
|
a. **0** stands for system deposition meaning the dmp is deposited using argos credentials to the repository,<br>
|
||||||
|
b. **1** stands for user deposition in which the argos user specifies his/her own credentials to the repository,<br>
|
||||||
|
c. **2** stands for both ways deposition if the repository allows the deposits of dmps to be made from both argos and users accounts<br>
|
||||||
|
note: depositType should be set to **0** since ckan does not provide oauth2 protocol but, instead, uses api tokens<br>
|
||||||
|
**repositoryId** - unique identifier for the repository<br>
|
||||||
|
**apiToken** - api token provided for the depositions<br>
|
||||||
|
**repositoryUrl** - repository's api url e.g. "http://localhost:5000/api/3/action/"<br>
|
||||||
|
**repositoryRecordUrl** - repository's record url, this url is used to index dmps that are created e.g. "http://localhost:5000/dataset?doi="<br>
|
||||||
|
**organization** - organization uuid (or name) in which all dmps that are deposited will be resided<br>
|
||||||
|
**hasLogo** - if the repository has a logo<br>
|
|
@ -0,0 +1,429 @@
|
||||||
|
THIRD-PARTY SOFTWARE NOTICES AND INFORMATION
|
||||||
|
Do Not Translate or Localize
|
||||||
|
|
||||||
|
This component uses third party material from the projects listed below.
|
||||||
|
The original copyright notice and the license under which CITE
|
||||||
|
received such third party material are set forth below. CITE
|
||||||
|
reserves all other rights not expressly granted, whether by
|
||||||
|
implication, estoppel or otherwise.
|
||||||
|
|
||||||
|
In the event that we accidentally failed to list a required notice, please
|
||||||
|
bring it to our attention. Post an issue or email us: reception@cite.gr
|
||||||
|
|
||||||
|
1. spring-boot-starter-parent
|
||||||
|
2. spring-boot-starter-web
|
||||||
|
3. spring-boot-starter-webflux
|
||||||
|
4. json
|
||||||
|
5. repositorydepositbase
|
||||||
|
|
||||||
|
spring-boot-starter-parent NOTICES, INFORMATION, AND LICENSE BEGIN HERE
|
||||||
|
=========================================
|
||||||
|
Apache License
|
||||||
|
Version 2.0, January 2004
|
||||||
|
http://www.apache.org/licenses/
|
||||||
|
|
||||||
|
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
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|
|
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|
1. Definitions.
|
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|
"License" shall mean the terms and conditions for use, reproduction,
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|
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APPENDIX: How to apply the Apache License to your work.
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See the License for the specific language governing permissions and
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||||||
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|
||||||
|
=========================================
|
||||||
|
END OF spring-boot-starter-parent NOTICES, INFORMATION, AND LICENSE
|
||||||
|
|
||||||
|
spring-boot-starter-web NOTICES, INFORMATION, AND LICENSE BEGIN HERE
|
||||||
|
=========================================
|
||||||
|
Apache License
|
||||||
|
Version 2.0, January 2004
|
||||||
|
http://www.apache.org/licenses/
|
||||||
|
|
||||||
|
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||||
|
|
||||||
|
1. Definitions.
|
||||||
|
|
||||||
|
"License" shall mean the terms and conditions for use, reproduction,
|
||||||
|
and distribution as defined by Sections 1 through 9 of this document.
|
||||||
|
|
||||||
|
"Licensor" shall mean the copyright owner or entity authorized by
|
||||||
|
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|
||||||
|
"Legal Entity" shall mean the union of the acting entity and all
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||||||
|
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|
||||||
|
"control" means (i) the power, direct or indirect, to cause the
|
||||||
|
direction or management of such entity, whether by contract or
|
||||||
|
otherwise, or (ii) ownership of fifty percent (50%) or more of the
|
||||||
|
outstanding shares, or (iii) beneficial ownership of such entity.
|
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|
|
||||||
|
"You" (or "Your") shall mean an individual or Legal Entity
|
||||||
|
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||||||
|
"Source" form shall mean the preferred form for making modifications,
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||||||
|
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|
||||||
|
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||||||
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|
"Object" form shall mean any form resulting from mechanical
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|
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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"Contributor" shall mean Licensor and any individual or Legal Entity
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||||||
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||||||
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||||||
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|
||||||
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2. Grant of Copyright License. Subject to the terms and conditions of
|
||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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4. Redistribution. You may reproduce and distribute copies of the
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||||||
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||||||
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||||||
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||||||
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|
||||||
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|
||||||
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||||||
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|
||||||
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|
||||||
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||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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(d) If the Work includes a "NOTICE" text file as part of its
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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||||||
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|
||||||
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You may add Your own copyright statement to Your modifications and
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||||||
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|
||||||
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||||||
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|
||||||
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5. Submission of Contributions. Unless You explicitly state otherwise,
|
||||||
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any Contribution intentionally submitted for inclusion in the Work
|
||||||
|
by You to the Licensor shall be under the terms and conditions of
|
||||||
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this License, without any additional terms or conditions.
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||||||
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Notwithstanding the above, nothing herein shall supersede or modify
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||||||
|
the terms of any separate license agreement you may have executed
|
||||||
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with Licensor regarding such Contributions.
|
||||||
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|
||||||
|
6. Trademarks. This License does not grant permission to use the trade
|
||||||
|
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|
||||||
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except as required for reasonable and customary use in describing the
|
||||||
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||||||
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|
||||||
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7. Disclaimer of Warranty. Unless required by applicable law or
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agreed to in writing, Licensor provides the Work (and each
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8. Limitation of Liability. In no event and under no legal theory,
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||||||
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unless required by applicable law (such as deliberate and grossly
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9. Accepting Warranty or Additional Liability. While redistributing
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of your accepting any such warranty or additional liability.
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||||||
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END OF TERMS AND CONDITIONS
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||||||
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|
||||||
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APPENDIX: How to apply the Apache License to your work.
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||||||
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||||||
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To apply the Apache License to your work, attach the following
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||||||
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Copyright [yyyy] [name of copyright owner]
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||||||
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|
||||||
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Licensed under the Apache License, Version 2.0 (the "License");
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||||||
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you may not use this file except in compliance with the License.
|
||||||
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You may obtain a copy of the License at
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||||||
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|
||||||
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http://www.apache.org/licenses/LICENSE-2.0
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||||||
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||||||
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Unless required by applicable law or agreed to in writing, software
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||||||
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distributed under the License is distributed on an "AS IS" BASIS,
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
See the License for the specific language governing permissions and
|
||||||
|
limitations under the License.
|
||||||
|
=========================================
|
||||||
|
END OF spring-boot-starter-web NOTICES, INFORMATION, AND LICENSE
|
|
@ -0,0 +1,123 @@
|
||||||
|
<?xml version="1.0" encoding="UTF-8"?>
|
||||||
|
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||||
|
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||||
|
<modelVersion>4.0.0</modelVersion>
|
||||||
|
<parent>
|
||||||
|
<groupId>org.springframework.boot</groupId>
|
||||||
|
<artifactId>spring-boot-starter-parent</artifactId>
|
||||||
|
<version>2.5.2</version>
|
||||||
|
<relativePath/>
|
||||||
|
</parent>
|
||||||
|
|
||||||
|
<groupId>gr.cite.opendmp</groupId>
|
||||||
|
<artifactId>repositorydepositckan</artifactId>
|
||||||
|
<version>${revision}</version>
|
||||||
|
<packaging>jar</packaging>
|
||||||
|
|
||||||
|
<name>OpenDMP Repository Deposit Ckan</name>
|
||||||
|
<description>OpenDMP Repository Deposit Ckan</description>
|
||||||
|
<url>https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-ckan</url>
|
||||||
|
<licenses>
|
||||||
|
<license>
|
||||||
|
<name>MIT License</name>
|
||||||
|
<url>https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-ckan/src/branch/master/LICENSE.txt</url>
|
||||||
|
<distribution>repo</distribution>
|
||||||
|
</license>
|
||||||
|
</licenses>
|
||||||
|
<developers>
|
||||||
|
<developer>
|
||||||
|
<name>CITE S.A.</name>
|
||||||
|
<email>maven-central@cite.gr</email>
|
||||||
|
<organization>CITE S.A.</organization>
|
||||||
|
<organizationUrl>https://www.cite.gr</organizationUrl>
|
||||||
|
</developer>
|
||||||
|
</developers>
|
||||||
|
<scm>
|
||||||
|
<connection>scm:git:git://code-repo.d4science.org</connection>
|
||||||
|
<developerConnection>scm:git:ssh://code-repo.d4science.org</developerConnection>
|
||||||
|
<url>https://code-repo.d4science.org/MaDgiK-CITE/repository-deposit-ckan</url>
|
||||||
|
</scm>
|
||||||
|
|
||||||
|
<properties>
|
||||||
|
<revision>1.0.0-SNAPSHOT</revision>
|
||||||
|
</properties>
|
||||||
|
|
||||||
|
<dependencies>
|
||||||
|
<dependency>
|
||||||
|
<groupId>org.springframework.boot</groupId>
|
||||||
|
<artifactId>spring-boot-starter-web</artifactId>
|
||||||
|
</dependency>
|
||||||
|
|
||||||
|
<dependency>
|
||||||
|
<groupId>org.springframework.boot</groupId>
|
||||||
|
<artifactId>spring-boot-starter-webflux</artifactId>
|
||||||
|
</dependency>
|
||||||
|
|
||||||
|
<dependency>
|
||||||
|
<groupId>gr.cite.opendmp</groupId>
|
||||||
|
<artifactId>repositorydepositbase</artifactId>
|
||||||
|
<version>1.0.1</version>
|
||||||
|
</dependency>
|
||||||
|
|
||||||
|
<dependency>
|
||||||
|
<groupId>org.json</groupId>
|
||||||
|
<artifactId>json</artifactId>
|
||||||
|
<version>20160810</version>
|
||||||
|
</dependency>
|
||||||
|
</dependencies>
|
||||||
|
|
||||||
|
<build>
|
||||||
|
<plugins>
|
||||||
|
<plugin>
|
||||||
|
<artifactId>maven-assembly-plugin</artifactId>
|
||||||
|
<executions>
|
||||||
|
<execution>
|
||||||
|
<phase>package</phase>
|
||||||
|
<goals>
|
||||||
|
<goal>single</goal>
|
||||||
|
</goals>
|
||||||
|
</execution>
|
||||||
|
</executions>
|
||||||
|
<configuration>
|
||||||
|
<archive>
|
||||||
|
<manifest>
|
||||||
|
<mainClass>eu.eudat.EuDatApplication</mainClass>
|
||||||
|
</manifest>
|
||||||
|
</archive>
|
||||||
|
<descriptorRefs>
|
||||||
|
<descriptorRef>jar-with-dependencies</descriptorRef>
|
||||||
|
</descriptorRefs>
|
||||||
|
</configuration>
|
||||||
|
</plugin>
|
||||||
|
<plugin>
|
||||||
|
<groupId>org.apache.maven.plugins</groupId>
|
||||||
|
<artifactId>maven-shade-plugin</artifactId>
|
||||||
|
<version>3.4.1</version>
|
||||||
|
<executions>
|
||||||
|
<execution>
|
||||||
|
<phase>package</phase>
|
||||||
|
<goals>
|
||||||
|
<goal>shade</goal>
|
||||||
|
</goals>
|
||||||
|
<configuration>
|
||||||
|
<filters>
|
||||||
|
<filter>
|
||||||
|
<artifact>*:*</artifact>
|
||||||
|
<excludes>
|
||||||
|
<exclude>module-info.class</exclude>
|
||||||
|
</excludes>
|
||||||
|
</filter>
|
||||||
|
</filters>
|
||||||
|
<relocations>
|
||||||
|
<relocation>
|
||||||
|
<pattern>org.json</pattern>
|
||||||
|
<shadedPattern>ckanrepository.shaded.org.json</shadedPattern>
|
||||||
|
</relocation>
|
||||||
|
</relocations>
|
||||||
|
</configuration>
|
||||||
|
</execution>
|
||||||
|
</executions>
|
||||||
|
</plugin>
|
||||||
|
</plugins>
|
||||||
|
</build>
|
||||||
|
</project>
|
|
@ -0,0 +1,18 @@
|
||||||
|
<settings>
|
||||||
|
<servers>
|
||||||
|
<server>
|
||||||
|
<id>ossrh</id>
|
||||||
|
<username>${server_username}</username>
|
||||||
|
<password>${server_password}</password>
|
||||||
|
</server>
|
||||||
|
</servers>
|
||||||
|
<profiles>
|
||||||
|
<profile>
|
||||||
|
<id>ossrh</id>
|
||||||
|
<properties>
|
||||||
|
<gpg.passphrase>${gpg_passphrase}</gpg.passphrase>
|
||||||
|
<gpg.keyname>${gpg_keyname}</gpg.keyname>
|
||||||
|
</properties>
|
||||||
|
</profile>
|
||||||
|
</profiles>
|
||||||
|
</settings>
|
|
@ -0,0 +1,107 @@
|
||||||
|
package eu.eudat.depositinterface.ckanrepository.config;
|
||||||
|
|
||||||
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||||
|
|
||||||
|
public class CkanConfig {
|
||||||
|
private enum DepositType {
|
||||||
|
SystemDeposit(0), UserDeposit(1), BothWaysDeposit(2);
|
||||||
|
|
||||||
|
private final int value;
|
||||||
|
|
||||||
|
DepositType(int value) {
|
||||||
|
this.value = value;
|
||||||
|
}
|
||||||
|
|
||||||
|
public int getValue() {
|
||||||
|
return value;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static DepositType fromInteger(int value) {
|
||||||
|
switch (value) {
|
||||||
|
case 0:
|
||||||
|
return SystemDeposit;
|
||||||
|
case 1:
|
||||||
|
return UserDeposit;
|
||||||
|
case 2:
|
||||||
|
return BothWaysDeposit;
|
||||||
|
default:
|
||||||
|
throw new RuntimeException("Unsupported Deposit Type");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@JsonProperty("depositType")
|
||||||
|
private int depositType;
|
||||||
|
@JsonProperty("repositoryId")
|
||||||
|
private String repositoryId;
|
||||||
|
@JsonProperty("apiToken")
|
||||||
|
private String apiToken;
|
||||||
|
@JsonProperty("repositoryUrl")
|
||||||
|
private String repositoryUrl;
|
||||||
|
@JsonProperty("repositoryRecordUrl")
|
||||||
|
private String repositoryRecordUrl;
|
||||||
|
@JsonProperty("organization")
|
||||||
|
private String organization;
|
||||||
|
@JsonProperty("hasLogo")
|
||||||
|
private boolean hasLogo;
|
||||||
|
|
||||||
|
public int getDepositType() {
|
||||||
|
return depositType;
|
||||||
|
}
|
||||||
|
public void setDepositType(int depositType) {
|
||||||
|
this.depositType = depositType;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getRepositoryId() {
|
||||||
|
return repositoryId;
|
||||||
|
}
|
||||||
|
public void setRepositoryId(String repositoryId) {
|
||||||
|
this.repositoryId = repositoryId;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getApiToken() {
|
||||||
|
return apiToken;
|
||||||
|
}
|
||||||
|
public void setApiToken(String apiToken) {
|
||||||
|
this.apiToken = apiToken;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getRepositoryUrl() {
|
||||||
|
return repositoryUrl;
|
||||||
|
}
|
||||||
|
public void setRepositoryUrl(String repositoryUrl) {
|
||||||
|
this.repositoryUrl = repositoryUrl;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getRepositoryRecordUrl() {
|
||||||
|
return repositoryRecordUrl;
|
||||||
|
}
|
||||||
|
public void setRepositoryRecordUrl(String repositoryRecordUrl) {
|
||||||
|
this.repositoryRecordUrl = repositoryRecordUrl;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getOrganization() {
|
||||||
|
return organization;
|
||||||
|
}
|
||||||
|
public void setOrganization(String organization) {
|
||||||
|
this.organization = organization;
|
||||||
|
}
|
||||||
|
|
||||||
|
public boolean isHasLogo() {
|
||||||
|
return hasLogo;
|
||||||
|
}
|
||||||
|
public void setHasLogo(boolean hasLogo) {
|
||||||
|
this.hasLogo = hasLogo;
|
||||||
|
}
|
||||||
|
|
||||||
|
public RepositoryDepositConfiguration toRepoConfig() {
|
||||||
|
RepositoryDepositConfiguration config = new RepositoryDepositConfiguration();
|
||||||
|
config.setDepositType(this.depositType);
|
||||||
|
config.setRepositoryId(this.repositoryId);
|
||||||
|
config.setRepositoryUrl(this.repositoryUrl);
|
||||||
|
config.setRepositoryRecordUrl(this.repositoryRecordUrl);
|
||||||
|
config.setHasLogo(this.hasLogo);
|
||||||
|
return config;
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,6 @@
|
||||||
|
package eu.eudat.depositinterface.ckanrepository.config;
|
||||||
|
|
||||||
|
public interface ConfigLoader {
|
||||||
|
byte[] getLogo();
|
||||||
|
CkanConfig getCkanConfig();
|
||||||
|
}
|
|
@ -0,0 +1,61 @@
|
||||||
|
package eu.eudat.depositinterface.ckanrepository.config;
|
||||||
|
|
||||||
|
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
|
import org.springframework.core.env.Environment;
|
||||||
|
import org.springframework.stereotype.Service;
|
||||||
|
|
||||||
|
import java.io.FileInputStream;
|
||||||
|
import java.io.FileNotFoundException;
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.io.InputStream;
|
||||||
|
|
||||||
|
@Service("ckanConfigLoader")
|
||||||
|
public class ConfigLoaderImpl implements ConfigLoader{
|
||||||
|
private static final Logger logger = LoggerFactory.getLogger(ConfigLoaderImpl.class);
|
||||||
|
private static final ObjectMapper mapper = new ObjectMapper();
|
||||||
|
|
||||||
|
private CkanConfig ckanConfig;
|
||||||
|
|
||||||
|
@Autowired
|
||||||
|
private Environment environment;
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public CkanConfig getCkanConfig() {
|
||||||
|
if(ckanConfig == null){
|
||||||
|
try{
|
||||||
|
ckanConfig = mapper.readValue(getStreamFromPath(environment.getProperty("configuration.ckan")), CkanConfig.class);
|
||||||
|
} catch (IOException e) {
|
||||||
|
logger.error(e.getLocalizedMessage(), e);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return ckanConfig;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public byte[] getLogo() {
|
||||||
|
String logo = environment.getProperty("configuration.logo");
|
||||||
|
if(logo != null && !logo.isEmpty()){
|
||||||
|
InputStream logoStream = getStreamFromPath(logo);
|
||||||
|
try {
|
||||||
|
return logoStream.readAllBytes();
|
||||||
|
}
|
||||||
|
catch (IOException e){
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
private InputStream getStreamFromPath(String filePath) {
|
||||||
|
try {
|
||||||
|
return new FileInputStream(filePath);
|
||||||
|
} catch (FileNotFoundException e) {
|
||||||
|
logger.info("loading from classpath");
|
||||||
|
return getClass().getClassLoader().getResourceAsStream(filePath);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,65 @@
|
||||||
|
package eu.eudat.depositinterface.ckanrepository.interfaces;
|
||||||
|
|
||||||
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
|
||||||
|
public class CkanDataset {
|
||||||
|
|
||||||
|
private String name;
|
||||||
|
@JsonProperty("private")
|
||||||
|
private boolean isPrivate;
|
||||||
|
private String author;
|
||||||
|
private String author_email;
|
||||||
|
private String notes;
|
||||||
|
private String version;
|
||||||
|
private String owner_org;
|
||||||
|
|
||||||
|
public String getName() {
|
||||||
|
return name;
|
||||||
|
}
|
||||||
|
public void setName(String name) {
|
||||||
|
this.name = name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public boolean isPrivate() {
|
||||||
|
return isPrivate;
|
||||||
|
}
|
||||||
|
public void setPrivate(boolean aPrivate) {
|
||||||
|
isPrivate = aPrivate;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getAuthor() {
|
||||||
|
return author;
|
||||||
|
}
|
||||||
|
public void setAuthor(String author) {
|
||||||
|
this.author = author;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getAuthor_email() {
|
||||||
|
return author_email;
|
||||||
|
}
|
||||||
|
public void setAuthor_email(String author_email) {
|
||||||
|
this.author_email = author_email;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getNotes() {
|
||||||
|
return notes;
|
||||||
|
}
|
||||||
|
public void setNotes(String notes) {
|
||||||
|
this.notes = notes;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getVersion() {
|
||||||
|
return version;
|
||||||
|
}
|
||||||
|
public void setVersion(String version) {
|
||||||
|
this.version = version;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getOwner_org() {
|
||||||
|
return owner_org;
|
||||||
|
}
|
||||||
|
public void setOwner_org(String owner_org) {
|
||||||
|
this.owner_org = owner_org;
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,194 @@
|
||||||
|
package eu.eudat.depositinterface.ckanrepository.interfaces;
|
||||||
|
|
||||||
|
import com.fasterxml.jackson.core.JsonProcessingException;
|
||||||
|
import com.fasterxml.jackson.databind.JsonNode;
|
||||||
|
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||||
|
import eu.eudat.depositinterface.ckanrepository.config.CkanConfig;
|
||||||
|
import eu.eudat.depositinterface.ckanrepository.config.ConfigLoader;
|
||||||
|
import eu.eudat.depositinterface.models.DMPDepositModel;
|
||||||
|
import eu.eudat.depositinterface.repository.RepositoryDeposit;
|
||||||
|
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||||
|
import org.json.JSONObject;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
|
import org.springframework.core.env.Environment;
|
||||||
|
import org.springframework.core.io.FileSystemResource;
|
||||||
|
import org.springframework.core.io.Resource;
|
||||||
|
import org.springframework.http.*;
|
||||||
|
import org.springframework.http.client.MultipartBodyBuilder;
|
||||||
|
import org.springframework.stereotype.Component;
|
||||||
|
import org.springframework.util.MultiValueMap;
|
||||||
|
import org.springframework.web.client.RestTemplate;
|
||||||
|
|
||||||
|
import java.io.File;
|
||||||
|
import java.io.FileOutputStream;
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.io.OutputStream;
|
||||||
|
import java.nio.file.Files;
|
||||||
|
import java.util.*;
|
||||||
|
|
||||||
|
@Component
|
||||||
|
public class CkanDeposit implements RepositoryDeposit {
|
||||||
|
private static final Logger logger = LoggerFactory.getLogger(CkanDeposit.class);
|
||||||
|
private static final ObjectMapper objectMapper = new ObjectMapper();
|
||||||
|
|
||||||
|
private ConfigLoader configLoader;
|
||||||
|
private Environment environment;
|
||||||
|
|
||||||
|
@Autowired
|
||||||
|
public CkanDeposit(ConfigLoader configLoader, Environment environment){
|
||||||
|
this.configLoader = configLoader;
|
||||||
|
this.environment = environment;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public String deposit(DMPDepositModel dmpDepositModel, String repositoryAccessToken) throws Exception {
|
||||||
|
|
||||||
|
CkanConfig ckanConfig = this.configLoader.getCkanConfig();
|
||||||
|
|
||||||
|
String doi;
|
||||||
|
|
||||||
|
CkanDataset dataset = new CkanDataset();
|
||||||
|
dataset.setName(dmpDepositModel.getLabel().replaceAll("[^a-zA-Z0-9]+", "_").toLowerCase());
|
||||||
|
//dataset.setPrivate(!dmpDepositModel.isPublic());
|
||||||
|
dataset.setPrivate(true);
|
||||||
|
dataset.setNotes(dmpDepositModel.getDescription());
|
||||||
|
dataset.setVersion(String.valueOf(dmpDepositModel.getVersion()));
|
||||||
|
dataset.setOwner_org(ckanConfig.getOrganization());
|
||||||
|
dataset.setAuthor("Argos User");
|
||||||
|
dataset.setAuthor_email("argosUser@example.com");
|
||||||
|
|
||||||
|
if(dmpDepositModel.getPreviousDOI() == null || dmpDepositModel.getPreviousDOI().isEmpty()){
|
||||||
|
RestTemplate restTemplate = new RestTemplate();
|
||||||
|
HttpHeaders headers = new HttpHeaders();
|
||||||
|
headers.set("Authorization", ckanConfig.getApiToken());
|
||||||
|
headers.setContentType(MediaType.APPLICATION_JSON);
|
||||||
|
String url = ckanConfig.getRepositoryUrl() + "package_create";
|
||||||
|
Object response = restTemplate.exchange(url, HttpMethod.POST, new HttpEntity<>(dataset, headers), Object.class).getBody();
|
||||||
|
Map<String, Object> respMap = objectMapper.convertValue(response, Map.class);
|
||||||
|
respMap = (Map<String, Object>) respMap.get("result");
|
||||||
|
String id = String.valueOf(respMap.get("id"));
|
||||||
|
|
||||||
|
doi = String.valueOf(respMap.get("doi"));
|
||||||
|
|
||||||
|
this.uploadFiles(dmpDepositModel, id);
|
||||||
|
}
|
||||||
|
else{
|
||||||
|
JsonNode datasetJson = this.getDatasetIdentifier(dmpDepositModel.getPreviousDOI()).get(0);
|
||||||
|
String datasetId = datasetJson.get("id").asText();
|
||||||
|
String version = datasetJson.get("version").asText();
|
||||||
|
|
||||||
|
JsonNode files = datasetJson.get("resources");
|
||||||
|
if(files.isArray()) {
|
||||||
|
for (JsonNode file : files) {
|
||||||
|
String fileId = file.get("id").asText();
|
||||||
|
this.deleteFile(fileId);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
this.uploadFiles(dmpDepositModel, datasetId);
|
||||||
|
|
||||||
|
Map<String, Object> resp = this.updateVersion(datasetId, version);
|
||||||
|
doi = (String) resp.get("doi");
|
||||||
|
}
|
||||||
|
|
||||||
|
return doi;
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
private Map<String, Object> updateVersion(String datasetId, String version){
|
||||||
|
HttpHeaders headers = new HttpHeaders();
|
||||||
|
headers.set("Authorization", this.configLoader.getCkanConfig().getApiToken());
|
||||||
|
headers.setContentType(MediaType.APPLICATION_JSON);
|
||||||
|
String serverUrl = this.configLoader.getCkanConfig().getRepositoryUrl() + "package_patch";
|
||||||
|
Map<String, String> body = new HashMap<>();
|
||||||
|
body.put("id", datasetId);
|
||||||
|
body.put("version", String.valueOf(Integer.parseInt(version) + 1));
|
||||||
|
RestTemplate restTemplate = new RestTemplate();
|
||||||
|
return (Map<String, Object>)restTemplate.exchange(serverUrl, HttpMethod.POST, new HttpEntity<>(body, headers), Map.class).getBody().get("result");
|
||||||
|
}
|
||||||
|
|
||||||
|
private void deleteFile(String fileId){
|
||||||
|
HttpHeaders headers = new HttpHeaders();
|
||||||
|
headers.set("Authorization", this.configLoader.getCkanConfig().getApiToken());
|
||||||
|
headers.setContentType(MediaType.APPLICATION_JSON);
|
||||||
|
String serverUrl = this.configLoader.getCkanConfig().getRepositoryUrl() + "resource_delete";
|
||||||
|
Map<String, String> map = new HashMap<>();
|
||||||
|
map.put("id", fileId);
|
||||||
|
RestTemplate restTemplate = new RestTemplate();
|
||||||
|
restTemplate.exchange(serverUrl, HttpMethod.POST, new HttpEntity<>(map, headers), Object.class);
|
||||||
|
}
|
||||||
|
|
||||||
|
private void uploadFiles(DMPDepositModel dmpDepositModel, String id) throws IOException {
|
||||||
|
this.uploadFile(dmpDepositModel.getPdfFileName(), dmpDepositModel.getPdfFile(), id);
|
||||||
|
|
||||||
|
String contentDisposition = dmpDepositModel.getRdaJson().getHeaders().get("Content-Disposition").get(0);
|
||||||
|
String jsonFileName = contentDisposition.substring(contentDisposition.lastIndexOf('=') + 1);
|
||||||
|
File rdaJson = new File(this.environment.getProperty("storage.temp") + jsonFileName);
|
||||||
|
OutputStream output = new FileOutputStream(rdaJson);
|
||||||
|
try {
|
||||||
|
output.write(Objects.requireNonNull(dmpDepositModel.getRdaJson().getBody()));
|
||||||
|
output.flush();
|
||||||
|
output.close();
|
||||||
|
} catch (IOException e) {
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
this.uploadFile(jsonFileName, rdaJson, id);
|
||||||
|
Files.deleteIfExists(rdaJson.toPath());
|
||||||
|
|
||||||
|
if(dmpDepositModel.getSupportingFilesZip() != null) {
|
||||||
|
this.uploadFile(dmpDepositModel.getSupportingFilesZip().getName(), dmpDepositModel.getSupportingFilesZip(), id);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private JsonNode getDatasetIdentifier(String previousDOI) throws JsonProcessingException {
|
||||||
|
HttpHeaders headers = new HttpHeaders();
|
||||||
|
headers.set("Authorization", this.configLoader.getCkanConfig().getApiToken());
|
||||||
|
String serverUrl = this.configLoader.getCkanConfig().getRepositoryUrl() + "package_search?q=doi:" + previousDOI + "&include_private=True";
|
||||||
|
RestTemplate restTemplate = new RestTemplate();
|
||||||
|
Object response = restTemplate.exchange(serverUrl, HttpMethod.GET, new HttpEntity<>(headers), Map.class).getBody().get("result");
|
||||||
|
JsonNode jsonNode = objectMapper.readTree(new JSONObject((Map<String, Object>)response).toString());
|
||||||
|
return jsonNode.findValues("results").get(0);
|
||||||
|
}
|
||||||
|
|
||||||
|
private void uploadFile(String filename, File file, String datasetId) {
|
||||||
|
HttpHeaders headers = new HttpHeaders();
|
||||||
|
headers.setContentType(MediaType.MULTIPART_FORM_DATA);
|
||||||
|
headers.set("Authorization", this.configLoader.getCkanConfig().getApiToken());
|
||||||
|
MultipartBodyBuilder multipartBodyBuilder = new MultipartBodyBuilder();
|
||||||
|
Resource resource = new FileSystemResource(file);
|
||||||
|
multipartBodyBuilder.part("upload", resource)
|
||||||
|
.header("filename", filename);
|
||||||
|
multipartBodyBuilder.part("name", filename);
|
||||||
|
multipartBodyBuilder.part("package_id", datasetId);
|
||||||
|
MultiValueMap<String, HttpEntity<?>> multipartBody = multipartBodyBuilder.build();
|
||||||
|
HttpEntity<MultiValueMap<String, HttpEntity<?>>> requestEntity = new HttpEntity<>(multipartBody, headers);
|
||||||
|
|
||||||
|
String serverUrl = this.configLoader.getCkanConfig().getRepositoryUrl() + "resource_create";
|
||||||
|
|
||||||
|
RestTemplate restTemplate = new RestTemplate();
|
||||||
|
ResponseEntity<Object> resp = restTemplate.postForEntity(serverUrl, requestEntity, Object.class);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public RepositoryDepositConfiguration getConfiguration() {
|
||||||
|
eu.eudat.depositinterface.ckanrepository.config.CkanConfig ckanConfig = this.configLoader.getCkanConfig();
|
||||||
|
return ckanConfig.toRepoConfig();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public String getLogo() {
|
||||||
|
RepositoryDepositConfiguration conf = this.getConfiguration();
|
||||||
|
if(conf.isHasLogo()){
|
||||||
|
byte[] logo = this.configLoader.getLogo();
|
||||||
|
return (logo != null && logo.length != 0) ? Base64.getEncoder().encodeToString(logo) : null;
|
||||||
|
}
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public String authenticate(String code) {
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,3 @@
|
||||||
|
storage.temp=${STORAGE_TMP_CKAN}
|
||||||
|
configuration.ckan=${CONFIGURATION_CKAN}
|
||||||
|
configuration.ckan.logo=${CONFIGURATION_LOGO_CKAN}
|
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Reference in New Issue