926 lines
39 KiB
Java
926 lines
39 KiB
Java
package eu.dnetlib.repo.manager.service;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.fasterxml.jackson.databind.SerializationFeature;
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import eu.dnetlib.api.functionality.ValidatorServiceException;
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import eu.dnetlib.domain.data.Repository;
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import eu.dnetlib.domain.data.RepositoryInterface;
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import eu.dnetlib.domain.enabling.Vocabulary;
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import eu.dnetlib.domain.functionality.validator.JobForValidation;
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import eu.dnetlib.repo.manager.domain.RepositorySnippet;
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import eu.dnetlib.repo.manager.domain.RequestFilter;
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import eu.dnetlib.repo.manager.exception.ResourceNotFoundException;
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import eu.dnetlib.repo.manager.shared.*;
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import eu.dnetlib.repo.manager.utils.Converter;
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import gr.uoa.di.driver.enabling.vocabulary.VocabularyLoader;
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import gr.uoa.di.driver.xml.repository.INTERFACE;
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import org.apache.commons.codec.digest.DigestUtils;
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import org.apache.log4j.Logger;
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import org.json.JSONArray;
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import org.json.JSONException;
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import org.json.JSONObject;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Value;
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import org.springframework.core.ParameterizedTypeReference;
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import org.springframework.http.*;
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import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
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import org.springframework.security.core.Authentication;
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import org.springframework.security.core.context.SecurityContextHolder;
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import org.springframework.stereotype.Service;
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import org.springframework.web.bind.annotation.PathVariable;
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import org.springframework.web.bind.annotation.RequestBody;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.client.RestClientException;
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import org.springframework.web.client.RestTemplate;
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import org.springframework.web.util.UriComponents;
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import org.springframework.web.util.UriComponentsBuilder;
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import javax.annotation.PostConstruct;
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import java.io.IOException;
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import java.sql.Timestamp;
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import java.util.*;
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import java.util.concurrent.ConcurrentHashMap;
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import java.util.stream.Collectors;
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@Service("repositoryService")
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public class RepositoryServiceImpl implements RepositoryService {
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@Value("${api.baseAddress}")
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private String baseAddress;
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@Value("${services.repo-manager.adminEmail}")
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private String adminEmail;
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@Autowired
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RestTemplate restTemplate;
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private HttpHeaders httpHeaders;
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private final String[] vocabularyNames = {"dnet:countries", "dnet:datasource_typologies", "dnet:compatibilityLevel"};
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private static final Logger LOGGER = Logger.getLogger(RepositoryServiceImpl.class);
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@Value("${services.repomanager.usageStatisticsDiagramsBaseURL}")
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private String usageStatisticsDiagramsBaseURL;
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@Value("${services.repomanager.usageStatisticsNumbersBaseURL}")
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private String usageStatisticsNumbersBaseURL;
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@Autowired
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private VocabularyLoader vocabularyLoader;
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@Autowired
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private PiWikService piWikService;
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@Autowired
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private EmailUtils emailUtils;
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@Autowired
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ValidatorService validatorService;
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private Map<String, Vocabulary> vocabularyMap = new ConcurrentHashMap<String, Vocabulary>();
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private Map<String, String> countriesMap = new HashMap<>();
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private Map<String, String> inverseCountriesMap = new HashMap<>();
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private static Map<String,List<String>> dataSourceClass = new HashMap<String,List<String>>(){{
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put("opendoar",new ArrayList<String>(){{ add("pubsrepository::institutional");
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add("pubsrepository::thematic");
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add("pubsrepository::unknown");
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add("pubsrepository::mock");
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}});
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put("re3data",new ArrayList<String>(){{ add("datarepository::unknown");
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}});
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put("journal",new ArrayList<String>(){{ add("pubsrepository::journal");
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}});
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put("aggregator",new ArrayList<String>(){{ add("aggregator::pubsrepository::institutional");
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add("aggregator::pubsrepository::journals");
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add("aggregator::datarepository");
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add("aggregator::pubsrepository::unknown");
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}});
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}};
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private static Map<String,String> invertedDataSourceClass = new HashMap<String,String>(){{
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put("pubsrepository::institutional","opendoar");
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put("pubsrepository::thematic","opendoar");
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put("pubsrepository::unknown","opendoar");
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put("pubsrepository::mock","opendoar");
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put("datarepository::unknown","re3data");
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put("pubsrepository::journal","journal");
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put("aggregator::pubsrepository::institutional","aggregator");
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put("aggregator::pubsrepository::journals","aggregator");
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put("aggregator::datarepository","aggregator");
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put("aggregator::pubsrepository::unknown","aggregator");
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}};
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@PostConstruct
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private void init() {
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LOGGER.debug("Initialization method of repository api!");
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LOGGER.debug("Updated version!");
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httpHeaders = new HttpHeaders();
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httpHeaders.setContentType(MediaType.APPLICATION_JSON_UTF8);
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// httpHeaders.set("Content-Type", "application/json");
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for (String vocName : vocabularyNames) {
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vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
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}
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Country[] countries = getCountries();
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for (Country c : countries) {
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countriesMap.put(c.getName(), c.getCode());
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inverseCountriesMap.put(c.getCode(), c.getName());
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}
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}
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@Override
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public Country[] getCountries() {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/countries")
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.build().encode();
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return restTemplate.getForObject(uriComponents.toUri(), Country[].class);
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}
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@Override
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public List<RepositorySnippet> getRepositoriesByCountry(@PathVariable("country") String country,
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@PathVariable("mode") String mode,
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@RequestParam(value = "managed",required=false) Boolean managed) throws JSONException, IOException {
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LOGGER.debug("Getting repositories by country!");
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int page = 0;
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int size = 100;
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List<RepositorySnippet> resultSet = new ArrayList<>();
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ObjectMapper mapper = new ObjectMapper();
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String filterKey = "UNKNOWN";
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if (mode.equalsIgnoreCase("opendoar"))
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filterKey = "openaire____::opendoar";
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else if (mode.equalsIgnoreCase("re3data"))
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filterKey = "openaire____::re3data";
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LOGGER.debug("Country code equals : " + country);
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LOGGER.debug("Filter mode equals : " + filterKey);
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UriComponents uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setCountry(country);
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requestFilter.setCollectedfrom(filterKey);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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while (jsonArray.length() > 0 ) {
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resultSet.addAll(mapper.readValue(String.valueOf(jsonArray),
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mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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page += 1;
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uriComponents = searchSnipperDatasource(String.valueOf(page),String.valueOf(size));
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rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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}
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return resultSet;
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}catch (Exception e){
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LOGGER.debug("Exception on getRepositoriesByCountry" , e);
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// emailUtils.reportException(e);
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throw e;
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}
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}
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public List<RepositorySnippet> searchRegisteredRepositories(String country, String typology, String englishName,
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String officialName, String requestSortBy, String order, int page, int pageSize) throws Exception {
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LOGGER.debug("Searching registered repositories");
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List<RepositorySnippet> resultSet = new ArrayList<>();
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ObjectMapper mapper = new ObjectMapper();
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UriComponents uriComponents = searchRegisteredDatasource(requestSortBy, order, Integer.toString(page), Integer.toString(pageSize));
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setCountry(country);
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requestFilter.setTypology(typology);
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requestFilter.setOfficialname(officialName);
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requestFilter.setEnglishname(englishName);
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try {
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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resultSet.addAll(mapper.readValue(String.valueOf(jsonArray), mapper.getTypeFactory().constructCollectionType(List.class, RepositorySnippet.class)));
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return resultSet;
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}catch (Exception e){
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LOGGER.error("Error searching registered datasources" , e);
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throw e;
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}
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}
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private Repository updateRepositoryInfo(Repository r) throws JSONException {
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/*
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* from datasource class
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* we get the datasource type form the inverted map
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* */
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r.setDatasourceType(getRepositoryType(r.getDatasourceClass()));
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r.setInterfaces(this.getRepositoryInterface(r.getId()));
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r.setPiwikInfo(piWikService.getPiwikSiteForRepo(r.getId()));
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r.setCountryName(getCountryName(r.getCountryCode()));
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return r;
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}
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private Collection<Repository> getRepositoriesByMode(String mode, List<Repository> rs) {
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List<Repository> reps = new ArrayList<>();
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for (Repository r : rs) {
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if (r.getCollectedFrom() != null && r.getCollectedFrom().equals(mode))
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reps.add(r);
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}
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return reps;
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}
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@Override
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public List<Repository> getRepositoriesOfUser(@PathVariable("userEmail") String userEmail,
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@PathVariable("page") String page,
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@PathVariable("size") String size) throws JSONException {
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LOGGER.debug("Retreiving repositories of user : " + userEmail );
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UriComponents uriComponents = searchDatasource(page,size);
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setRegisteredby(userEmail);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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for (Repository r : repos)
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this.updateRepositoryInfo(r);
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return repos;
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}catch (Exception e){
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LOGGER.debug("Exception on getRepositoriesOfUser" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public Repository getRepositoryById(@PathVariable("id") String id) throws JSONException,ResourceNotFoundException {
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LOGGER.debug("Retreiving repositories with id : " + id );
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Repository repo = null;
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UriComponents uriComponents = searchDatasource("0","100");
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setId(id);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONArray jsonArray = (JSONArray) new JSONObject(rs).get("datasourceInfo");
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if(jsonArray.length() == 0)
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throw new ResourceNotFoundException();
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repo = Converter.jsonToRepositoryObject(jsonArray.getJSONObject(0));
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return updateRepositoryInfo(repo);
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}catch (JSONException e){
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LOGGER.debug("Exception on getRepositoryById" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public List<AggregationDetails> getRepositoryAggregations(@PathVariable("id") String id) throws JSONException {
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LOGGER.debug("Retreiving aggregations for repository with id : " + id );
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UriComponents uriComponents = searchDatasource("0","100");
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setId(id);
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List<AggregationDetails> aggregationHistory = new ArrayList<>();
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try {
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONObject repository = new JSONObject(rs);
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if(repository.getJSONArray("datasourceInfo").length() == 0)
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return aggregationHistory;
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aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
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return aggregationHistory.size() == 0? aggregationHistory : aggregationHistory.stream()
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.sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
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.limit(20)
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.collect(Collectors.toList());
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} catch (JSONException e) {
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LOGGER.debug("Exception on getRepositoryAggregations" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public Map<String, List<AggregationDetails>> getRepositoryAggregationsByYear(@PathVariable("id") String id) throws JSONException {
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LOGGER.debug("Retreiving aggregations (by year) for repository with id : " + id );
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UriComponents uriComponents = searchDatasource("0","100");
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setId(id);
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List<AggregationDetails> aggregationHistory = new ArrayList<>();
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Map<String, List<AggregationDetails>> aggregationByYear = new HashMap<>();
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try {
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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JSONObject repository = new JSONObject(rs);
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if(repository.getJSONArray("datasourceInfo").length() == 0)
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return aggregationByYear;
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aggregationHistory.addAll(Converter.getAggregationHistoryFromJson(repository.getJSONArray("datasourceInfo").getJSONObject(0)));
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return aggregationHistory.size() == 0? aggregationByYear:createYearMap(aggregationHistory);
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} catch (JSONException e) {
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LOGGER.debug("Exception on getRepositoryAggregations" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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private Map<String,List<AggregationDetails>> createYearMap(List<AggregationDetails> aggregationHistory) {
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Map<String, List<AggregationDetails>> aggregationByYear;
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aggregationHistory = aggregationHistory.stream()
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.sorted(Comparator.comparing(AggregationDetails::getDate).reversed())
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.collect(Collectors.toList());
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return aggregationHistory.stream()
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.collect(Collectors.groupingBy(AggregationDetails::getYear));
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}
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@Override
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public List<Repository> getRepositoriesByName(@PathVariable("name") String name,
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@PathVariable("page") String page,
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@PathVariable("size") String size) throws JSONException {
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LOGGER.debug("Retreiving repositories with official name : " + name );
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UriComponents uriComponents = searchDatasource("0","100");
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RequestFilter requestFilter = new RequestFilter();
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requestFilter.setOfficialname(name);
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try{
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String rs = restTemplate.postForObject(uriComponents.toUri(),requestFilter, String.class);
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List<Repository> repos = Converter.jsonToRepositoryList(new JSONObject(rs));
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for (Repository r : repos)
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updateRepositoryInfo(r);
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return repos;
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}catch (Exception e){
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LOGGER.debug("Exception on getRepositoriesByName" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public List<RepositoryInterface> getRepositoryInterface(@PathVariable("id") String id) throws JSONException {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/api/")
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.path("/{id}")
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.build().expand(id).encode();
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try{
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String rs = restTemplate.getForObject(uriComponents.toUri(), String.class);
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return Converter.jsonToRepositoryInterfaceList(new JSONObject(rs));
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}catch (Exception e ){
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LOGGER.debug("Exception on getRepositoryInterface" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public Repository addRepository(@RequestParam("datatype") String datatype,
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@RequestBody Repository repository) throws Exception {
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LOGGER.debug("storing " + datatype + " repository with id: " + repository.getId());
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repository.setCountryCode(countriesMap.get(repository.getCountryName()));
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repository.setActivationId(UUID.randomUUID().toString());
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repository.setCollectedFrom("infrastruct_::openaire");
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if (datatype.equals("journal")) {
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repository.setId("openaire____::issn" + repository.getIssn());
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repository.setNamespacePrefix("issn" + repository.getIssn());
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this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
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}else if (datatype.equals("aggregator")) {
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repository.setId("openaire____::" + com.unboundid.util.Base64.encode(repository.getOfficialName()));
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repository.setNamespacePrefix(DigestUtils.md5Hex(repository.getOfficialName()).substring(0,12));
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this.storeRepository(repository, SecurityContextHolder.getContext().getAuthentication());
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}else {
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this.latentUpdate(repository, SecurityContextHolder.getContext().getAuthentication());
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}
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return repository;
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}
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/* update method acting as add -> send email with registration topic/body*/
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private Repository latentUpdate(Repository repository, Authentication authentication) throws Exception {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/update/")
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.build()
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.encode();
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try {
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String json_repository = Converter.repositoryObjectToJson(repository);
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LOGGER.debug("JSON to add(update) -> " + json_repository);
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//
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// // TODO delete these 3 lines
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// HttpHeaders temp = new HttpHeaders();
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// temp.setContentType(MediaType.APPLICATION_JSON_UTF8);
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HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
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ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
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if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
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emailUtils.sendUserRegistrationEmail(repository, authentication);
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emailUtils.sendAdminRegistrationEmail(repository, authentication);
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} else
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LOGGER.debug(responseEntity.getBody().toString());
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return repository;
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} catch (Exception e) {
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LOGGER.debug("Exception on updateRepository" , e);
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emailUtils.reportException(e);
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throw e;
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}
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}
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@Override
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public Repository updateRepository(@RequestBody Repository repository,Authentication authentication) throws Exception {
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UriComponents uriComponents = UriComponentsBuilder
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.fromHttpUrl(baseAddress + "/ds/update/")
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.build()
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.encode();
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try {
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String json_repository = Converter.repositoryObjectToJson(repository);
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LOGGER.debug("JSON to update -> " + json_repository);
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HttpEntity<String> httpEntity = new HttpEntity<String>(json_repository, httpHeaders);
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ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity
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, ResponseEntity.class);
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if (responseEntity.getStatusCode().equals(HttpStatus.OK)) {
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emailUtils.sendUserUpdateRepositoryEmail(repository, authentication);
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emailUtils.sendAdminUpdateRepositoryEmail(repository, authentication);
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} else
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LOGGER.debug(responseEntity.getBody().toString());
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return repository;
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} catch (Exception e) {
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|
LOGGER.debug("Exception on updateRepository" , e);
|
|
emailUtils.reportException(e);
|
|
throw e;
|
|
}
|
|
}
|
|
|
|
private void updateInterface(String datatype,RepositoryInterface iFace) {
|
|
//TODO call update base url
|
|
//((DatasourceManagerService) this.dmService.getService()).updateBaseUrl(repo.getId(), iFace.getId(), iFace.getBaseUrl());
|
|
if (!iFace.getAccessSet().isEmpty()) {
|
|
LOGGER.debug("set not empty: " + iFace.getAccessSet());
|
|
//TODO call update method for access params
|
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "set", iFace.getAccessSet(), false);
|
|
} else {
|
|
//TODO call deleteAccessParamOrExtraField
|
|
//((DatasourceManagerService) this.dmService.getService()).deleteAccessParamOrExtraField(repo.getId(), iFace.getId(), "set");
|
|
}
|
|
//TODO update content description
|
|
//((DatasourceManagerService) this.dmService.getService()).updateContentDescription(repo.getId(), iFace.getId(), "metadata");
|
|
if (datatype.equals("re3data")) {
|
|
//TODO call update access params
|
|
// ((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_datacite", false);
|
|
iFace.setAccessFormat("oai_datacite");
|
|
} else {
|
|
//TODO call update access params
|
|
//((DatasourceManagerService) this.dmService.getService()).updateAccessParam(repo.getId(), iFace.getId(), "format", "oai_dc", false);
|
|
iFace.setAccessFormat("oai_dc");
|
|
}
|
|
|
|
}
|
|
|
|
private void storeRepository(Repository repository, Authentication authentication) throws Exception {
|
|
|
|
Date utilDate = new Date();
|
|
Timestamp date = new Timestamp(utilDate.getTime());
|
|
repository.setDateOfCollection(date);
|
|
repository.setAggregator("OPENAIRE");
|
|
repository.setCountryCode(countriesMap.get(repository.getCountryName()));
|
|
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/add/")
|
|
.build()
|
|
.encode();
|
|
String json_repository = Converter.repositoryObjectToJson(repository);
|
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_repository,httpHeaders);
|
|
ResponseEntity responseEntity = restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, httpEntity, ResponseEntity.class);
|
|
|
|
if(responseEntity.getStatusCode().equals(HttpStatus.OK)) {
|
|
emailUtils.sendUserRegistrationEmail(repository, authentication);
|
|
emailUtils.sendAdminRegistrationEmail(repository, authentication);
|
|
} else {
|
|
LOGGER.debug(responseEntity.getBody().toString());
|
|
}
|
|
}
|
|
|
|
@Override
|
|
public void deleteRepositoryInterface(@RequestParam("id") String id ,
|
|
@RequestParam("registeredBy") String registeredBy){
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/api/")
|
|
.path("/{id}")
|
|
.build().expand(id).encode();
|
|
LOGGER.debug(uriComponents.toUri());
|
|
restTemplate.delete(uriComponents.toUri());
|
|
}
|
|
|
|
@Override
|
|
public RepositoryInterface addRepositoryInterface(@RequestParam("datatype") String datatype,
|
|
@RequestParam("repoId") String repoId,
|
|
@RequestParam("registeredBy") String registeredBy,
|
|
@RequestBody RepositoryInterface repositoryInterface) throws JSONException,ResourceNotFoundException {
|
|
try {
|
|
Repository e = this.getRepositoryById(repoId);
|
|
repositoryInterface = createRepositoryInterface(e,repositoryInterface,datatype);
|
|
String json_interface = Converter.repositoryInterfaceObjectToJson(e,repositoryInterface);
|
|
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/api/add/")
|
|
.build()
|
|
.encode();
|
|
|
|
HttpEntity<String> httpEntity = new HttpEntity <String> (json_interface,httpHeaders);
|
|
restTemplate.postForObject(uriComponents.toUri(),httpEntity,String.class);
|
|
return repositoryInterface;
|
|
|
|
} catch (JSONException e) {
|
|
LOGGER.debug("Exception on addRepositoryInterface" , e);
|
|
emailUtils.reportException(e);
|
|
throw e;
|
|
}
|
|
}
|
|
|
|
@Override
|
|
public RepositoryInterface updateRepositoryInterface(@RequestParam("repoId") String repoId,
|
|
@RequestParam("registeredBy") String registeredBy,
|
|
@RequestBody RepositoryInterface repositoryInterface) throws Exception {
|
|
|
|
this.updateBaseUrl(repoId,repositoryInterface.getId(),repositoryInterface.getBaseUrl());
|
|
this.updateCompliance(repoId,repositoryInterface.getId(),repositoryInterface.getCompliance());
|
|
this.updateValidationSet(repoId,repositoryInterface.getId(),repositoryInterface.getAccessSet());
|
|
return repositoryInterface;
|
|
}
|
|
|
|
private void submitInterfaceValidation(Repository repo, String repoType, String userEmail, RepositoryInterface iFace) throws ValidatorServiceException {
|
|
JobForValidation job = new JobForValidation();
|
|
|
|
job.setActivationId(UUID.randomUUID().toString());
|
|
job.setAdminEmails(Collections.singletonList(this.adminEmail));
|
|
job.setBaseUrl(iFace.getBaseUrl());
|
|
job.setDatasourceId(repo.getId());
|
|
job.setDesiredCompatibilityLevel(iFace.getDesiredCompatibilityLevel());
|
|
job.setInterfaceId(iFace.getId());
|
|
// job.setInterfaceIdOld(null);
|
|
job.setOfficialName(repo.getOfficialName());
|
|
job.setRepoType(repoType);
|
|
job.setUserEmail(userEmail);
|
|
job.setValidationSet(iFace.getAccessSet());
|
|
job.setRecords(-1);
|
|
job.setRegistration(true);
|
|
job.setUpdateExisting(false);
|
|
|
|
this.validatorService.submitJobForValidation(job);
|
|
}
|
|
|
|
private RepositoryInterface createRepositoryInterface(Repository repo, RepositoryInterface iFace, String datatype) {
|
|
|
|
iFace.setContentDescription("metadata");
|
|
iFace.setCompliance("UNKNOWN");
|
|
|
|
if (datatype.equals("re3data"))
|
|
iFace.setAccessFormat("oai_datacite");
|
|
else
|
|
iFace.setAccessFormat("oai_dc");
|
|
|
|
|
|
if (repo.getDatasourceClass() != null && !repo.getDatasourceClass().isEmpty())
|
|
iFace.setTypology(repo.getDatasourceClass());
|
|
else if (datatype.equalsIgnoreCase("journal"))
|
|
iFace.setTypology("pubsrepository::journal");
|
|
else if (datatype.equalsIgnoreCase("aggregator"))
|
|
iFace.setTypology("aggregator::pubsrepository::unknown");
|
|
else if (datatype.equalsIgnoreCase("opendoar"))
|
|
iFace.setTypology("pubsrepository::unknown");
|
|
else if (datatype.equalsIgnoreCase("re3data"))
|
|
iFace.setTypology("datarepository::unknown");
|
|
|
|
iFace.setRemovable(true);
|
|
iFace.setAccessProtocol("oai");
|
|
iFace.setMetadataIdentifierPath("//*[local-name()='header']/*[local-name()='identifier']");
|
|
iFace.setId("api_________::" + repo.getId() + "::" + UUID.randomUUID().toString().substring(0, 8));
|
|
if (iFace.getAccessSet().isEmpty()) {
|
|
LOGGER.debug("set is empty: " + iFace.getAccessSet());
|
|
iFace.removeAccessSet();
|
|
}
|
|
return iFace;
|
|
}
|
|
|
|
@Override
|
|
public List<String> getDnetCountries() {
|
|
LOGGER.debug("Getting dnet-countries!");
|
|
return Converter.readFile("countries.txt");
|
|
}
|
|
|
|
@Override
|
|
public List<String> getTypologies() {
|
|
return Converter.readFile("typologies.txt");
|
|
}
|
|
|
|
@Override
|
|
public List<Timezone> getTimezones() {
|
|
List<String> timezones = Converter.readFile("timezones.txt");
|
|
return Converter.toTimezones(timezones);
|
|
}
|
|
|
|
@Override
|
|
public List<String> getUrlsOfUserRepos(@PathVariable("user_email") String userEmail,
|
|
@PathVariable("page") String page,
|
|
@PathVariable("size") String size) throws JSONException {
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/api/baseurl/")
|
|
.path("/{page}/{size}")
|
|
.build().expand(page,size).encode();
|
|
|
|
try{
|
|
RequestFilter requestFilter = new RequestFilter();
|
|
requestFilter.setRegisteredby(userEmail);
|
|
return Arrays.asList(restTemplate.postForObject(uriComponents.toUri(),requestFilter, String[].class));
|
|
}catch (Exception e){
|
|
LOGGER.debug("Exception on addRepositoryInterface" , e);
|
|
emailUtils.reportException(e);
|
|
throw e;
|
|
}
|
|
}
|
|
|
|
@Override
|
|
public List<String> getDatasourceVocabularies(@PathVariable("mode") String mode) {
|
|
|
|
List<String> resultSet = new ArrayList<>();
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
|
if (entry.getKey().contains("aggregator"))
|
|
resultSet.add(entry.getValue());
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
|
if (entry.getKey().contains("journal"))
|
|
resultSet.add(entry.getValue());
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
|
if (entry.getKey().contains("pubsrepository"))
|
|
resultSet.add(entry.getValue());
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
|
if (entry.getKey().contains("datarepository"))
|
|
resultSet.add(entry.getValue());
|
|
}
|
|
}
|
|
|
|
|
|
return resultSet;
|
|
}
|
|
|
|
private Vocabulary getVocabulary(String vocName) {
|
|
|
|
if (!vocabularyMap.containsKey(vocName)) {
|
|
vocabularyMap.put(vocName, vocabularyLoader.getVocabulary(vocName, Locale.ENGLISH, Locale.ROOT));
|
|
}
|
|
return vocabularyMap.get(vocName);
|
|
}
|
|
|
|
|
|
@Override
|
|
public Map<String, String> getCompatibilityClasses(@PathVariable("mode") String mode) {
|
|
|
|
LOGGER.debug("Getting compatibility classes for mode: " + mode);
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
|
|
|
Map<String, String> compatibilityClasses = this.getVocabulary("dnet:compatibilityLevel").getAsMap();
|
|
boolean foundData = false;
|
|
for (Map.Entry<String, String> entry : compatibilityClasses.entrySet()) {
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_ALL))
|
|
return compatibilityClasses;
|
|
else if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA)) {
|
|
if (entry.getKey().matches("^openaire[1-9].0_data$")) {
|
|
retMap.put(entry.getKey(), entry.getValue());
|
|
foundData = true;
|
|
}
|
|
} else {
|
|
if (entry.getKey().matches("^openaire[1-9].0$") || entry.getKey().equals("driver"))
|
|
retMap.put(entry.getKey(), entry.getValue());
|
|
}
|
|
}
|
|
|
|
//TODO TO BE REMOVED WHEN VOCABULARIES ARE UPDATED
|
|
if (mode.equalsIgnoreCase(Constants.REPOSITORY_MODE_RE3DATA) && !foundData)
|
|
retMap.put("openaire2.0_data", "OpenAIRE Data (funded, referenced datasets)");
|
|
|
|
return retMap;
|
|
}
|
|
|
|
@Override
|
|
public Map<String, String> getDatasourceClasses(@PathVariable("mode") String mode) {
|
|
|
|
LOGGER.debug("Getting datasource classes for mode: " + mode);
|
|
|
|
Map<String, String> retMap = new HashMap<String, String>();
|
|
|
|
for (Map.Entry<String, String> entry : this.getVocabulary("dnet:datasource_typologies").getAsMap().entrySet()) {
|
|
if (mode.equalsIgnoreCase("aggregator")) {
|
|
if (entry.getKey().contains("aggregator"))
|
|
retMap.put(entry.getKey(), entry.getValue());
|
|
} else if (mode.equalsIgnoreCase("journal")) {
|
|
if (entry.getKey().contains("journal"))
|
|
retMap.put(entry.getKey(), entry.getValue());
|
|
} else if (mode.equalsIgnoreCase("opendoar")) {
|
|
if (entry.getKey().contains("pubsrepository"))
|
|
retMap.put(entry.getKey(), entry.getValue());
|
|
} else if (mode.equalsIgnoreCase("re3data")) {
|
|
if (entry.getKey().contains("datarepository"))
|
|
retMap.put(entry.getKey(), entry.getValue());
|
|
}
|
|
}
|
|
return filterResults(retMap,mode);
|
|
|
|
}
|
|
|
|
private Map<String,String> filterResults(Map<String, String> map,String mode) {
|
|
|
|
HashMap<String,String> filteredMap = new HashMap<>();
|
|
for(String key:map.keySet())
|
|
if(dataSourceClass.get(mode).contains(key))
|
|
filteredMap.put(key,map.get(key));
|
|
|
|
return filteredMap;
|
|
}
|
|
|
|
@Override
|
|
public String getCountryName(String countryCode) {
|
|
return inverseCountriesMap.get(countryCode);
|
|
}
|
|
|
|
@Override
|
|
public MetricsInfo getMetricsInfoForRepository(@PathVariable("repoId") String repoId) throws RepositoryServiceException {
|
|
try {
|
|
|
|
MetricsInfo metricsInfo = new MetricsInfo();
|
|
metricsInfo.setDiagramsBaseURL(this.usageStatisticsDiagramsBaseURL);
|
|
metricsInfo.setMetricsNumbers(getMetricsNumbers(getOpenAIREId(repoId)));
|
|
return metricsInfo;
|
|
|
|
} catch (Exception e) {
|
|
LOGGER.error("Error while getting metrics info for repository: ", e);
|
|
emailUtils.reportException(e);
|
|
throw new RepositoryServiceException("General error", RepositoryServiceException.ErrorCode.GENERAL_ERROR);
|
|
}
|
|
}
|
|
|
|
@Override
|
|
public Map<String, String> getListLatestUpdate(@PathVariable("mode") String mode) throws JSONException {
|
|
if(mode.equals("opendoar"))
|
|
return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(0).getLastCollectionDate());
|
|
else
|
|
/*
|
|
* first api of re3data has null value on collection date
|
|
* */
|
|
return Collections.singletonMap("lastCollectionDate", getRepositoryInterface("openaire____::"+mode).get(1).getLastCollectionDate());
|
|
}
|
|
|
|
private void updateValidationSet(String repositoryId, String repositoryInterfaceId, String validationSet) throws Exception {
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/api/oaiset")
|
|
.queryParam("dsId",repositoryId)
|
|
.queryParam("apiId",repositoryInterfaceId)
|
|
.queryParam("oaiSet",validationSet)
|
|
.build().encode();
|
|
restTemplate.exchange(uriComponents.toUri(),HttpMethod.POST, null, ResponseEntity.class);
|
|
|
|
}
|
|
|
|
|
|
private void updateBaseUrl(String repositoryId, String repositoryInterfaceId, String baseUrl) {
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/api/baseurl")
|
|
.queryParam("dsId",repositoryId)
|
|
.queryParam("apiId",repositoryInterfaceId)
|
|
.queryParam("baseUrl",baseUrl)
|
|
.build().encode();
|
|
restTemplate.postForObject(uriComponents.toUri(),null,String.class);
|
|
}
|
|
|
|
private void updateCompliance(String repositoryId, String repositoryInterfaceId,String compliance) {
|
|
UriComponents uriComponents = UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/api/compliance")
|
|
.queryParam("dsId",repositoryId)
|
|
.queryParam("apiId",repositoryInterfaceId)
|
|
.queryParam("compliance",compliance)
|
|
.build().encode();
|
|
restTemplate.postForObject(uriComponents.toUri(),null,String.class);
|
|
}
|
|
|
|
private MetricsNumbers getMetricsNumbers(String openAIREID) throws BrokerException {
|
|
|
|
//build the uri params
|
|
UriComponentsBuilder builder = UriComponentsBuilder.fromHttpUrl(this.usageStatisticsNumbersBaseURL + openAIREID + "/clicks");
|
|
|
|
//create new template engine
|
|
RestTemplate template = new RestTemplate();
|
|
template.getMessageConverters().add(new MappingJackson2HttpMessageConverter());
|
|
ResponseEntity<MetricsNumbers> resp;
|
|
try {
|
|
//communicate with endpoint
|
|
resp = template.exchange(
|
|
builder.build().encode().toUri(),
|
|
HttpMethod.GET,
|
|
null,
|
|
new ParameterizedTypeReference<MetricsNumbers>() {
|
|
});
|
|
} catch (RestClientException e) {
|
|
LOGGER.debug("Exception on getMetricsNumbers" , e);
|
|
emailUtils.reportException(e);
|
|
throw e;
|
|
}
|
|
|
|
return resp.getBody();
|
|
}
|
|
|
|
private String getOpenAIREId(String repoId) {
|
|
|
|
if (repoId != null && repoId.contains("::")) {
|
|
return repoId.split("::")[0] + "::" + DigestUtils.md5Hex(repoId.split("::")[1]);
|
|
}
|
|
|
|
return null;
|
|
}
|
|
|
|
private UriComponents searchDatasource(String page,String size){
|
|
|
|
return UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/search/")
|
|
.path("/{page}/{size}/")
|
|
.queryParam("requestSortBy","officialname")
|
|
.queryParam("order","ASCENDING")
|
|
.build().expand(page, size).encode();
|
|
}
|
|
|
|
private UriComponents searchSnipperDatasource(String page,String size){
|
|
|
|
return UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/searchsnippet/")
|
|
.path("/{page}/{size}/")
|
|
.queryParam("requestSortBy","officialname")
|
|
.queryParam("order","ASCENDING")
|
|
.build().expand(page, size).encode();
|
|
}
|
|
|
|
private UriComponents searchRegisteredDatasource(String requestSortBy, String order, String page,String size){
|
|
|
|
return UriComponentsBuilder
|
|
.fromHttpUrl(baseAddress + "/ds/searchregistered/")
|
|
.path("/{page}/{size}/")
|
|
.queryParam("requestSortBy",requestSortBy)
|
|
.queryParam("order",order)
|
|
.build().expand(page, size).encode();
|
|
}
|
|
|
|
private String getRepositoryType(String typology){
|
|
return invertedDataSourceClass.get(typology);
|
|
}
|
|
|
|
|
|
}
|