import {ChangeDetectorRef, Component, OnDestroy, OnInit, ViewChild} from "@angular/core";
import {Subscription} from "rxjs";
import {Meta, Title} from "@angular/platform-browser";
import {ActivatedRoute, Router} from "@angular/router";
import {OpenaireEntities} from "../../utils/properties/searchFields";
import {SEOService} from "../../sharedComponents/SEO/SEO.service";
import {properties} from "../../../../environments/environment";
import {Breadcrumb} from "../../utils/breadcrumbs/breadcrumbs.component";

declare var ResizeObserver;

@Component({
  selector: 'terminology',
  template: `
		<div id="graph_element" #graph_element class="uk-blur-background" uk-sticky="bottom: true;" [attr.offset]="graph_offset">
			<div class="uk-container uk-container-large uk-margin-small-top uk-margin-small-bottom">
				<icon name="graph" customClass="text-graph"></icon>
				<span class="uk-margin-small-left uk-text-meta">More information for </span>
				<a href="https://graph.openaire.eu" class="text-graph">OpenAIRE Research Graph</a>
				<span class="uk-text-meta">.</span>
			</div>
		</div>
    <div class="uk-container uk-container-large uk-section uk-section-small uk-padding-remove-bottom">
      <div class="uk-padding-small uk-padding-remove-horizontal">
        <breadcrumbs [breadcrumbs]="breadcrumbs"></breadcrumbs>
      </div>
    </div>
    <div class="uk-section" uk-scrollspy="target: [uk-scrollspy-class]; cls: uk-animation-fade; delay: 250">
      <div class="uk-container uk-container-large" uk-scrollspy-class>
        <h1>Terminology and <br> construction<span class="uk-text-primary">.</span></h1>
      </div>
      <div class="uk-section uk-container uk-container-large" uk-scrollspy-class>
        <ul class="uk-tab" uk-tab>
          <li>
            <a>Entities</a>
          </li>
          <li>
            <a>Inherited and Inferred Attributes</a>
          </li>
          <li>
            <a>Constructed Attributes</a>
          </li>
        </ul>
        <ul class="uk-switcher">
          <li>
            <dl class="uk-description-list uk-description-list-divider">
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1 uk-text-primary">Research Products</dt>
                <dd class="uk-width-expand">
                  <div>There are four different types of research products in the
                    OpenAIRE Research Graph:
                  </div>
                  <ul class="uk-list uk-list-bullet uk-list-primary">
                    <li>Publications</li>
                    <li>Research data</li>
                    <li>Research software</li>
                    <li>Other research products.</li>
                  </ul>
                  <div class="uk-margin-small-top">
										We deduplicate (merge) different records of research products and keep the metadata of all instances.
                  </div>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Publication</dt>
                <dd class="uk-width-expand">
                  Research products intended for human reading (published articles, pre-prints, conference
                  papers, presentations, technical reports, etc.)
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Research data</dt>
                <dd class="uk-width-expand">
                  <div>
										The sources from which the description of the research data has been collected reflect and support their own granularity, we do not define it.
                  </div>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Research software</dt>
                <dd class="uk-width-expand">
                  Source code or software package developed and/or used in a research context
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Other research product</dt>
                <dd class="uk-width-expand">
                  Anything that does not fall in the previous categories (e.g. workflow, methods, protocols)
                </dd>
              </div>
            </dl>
          </li>
          <li>
            <div class="uk-text-center uk-padding">
							We either inherit the attributes of entities via entries in the harvested metadata records or automatically generate them using our inference system (text and data mining algorithms).
            </div>
            <hr>
            <dl class="uk-description-list uk-description-list-divider">
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Organization</dt>
                <dd class="uk-width-expand">
                  <p><span class="uk-text-bold">For research products,</span> this refers to the
                    affiliated organizations of its authors</p>
                  <p><span class="uk-text-bold">For projects:</span>
                    the organizations participating in
                    the project
                    (i.e. beneficiaries of the grant)</p>
                  <p>
										We are improving the organization database with the use of our <a href="https://orgs.openaire.eu/" target="_blank">OpenOrgs</a> tool. It allows curators to disambiguate organizations (merge different names of the same organization) and identify parent-child relationships (schools, departments, etc.).
									</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Country</dt>
                <dd class="uk-width-expand">
                  <p>The country of the organization. </p>
                  <p>
                    <span class="uk-text-bold">Country code mapping: </span>
                    <a href="https://api.openaire.eu/vocabularies/dnet:countries" target="_blank">
                      https://api.openaire.eu/vocabularies/dnet:countries</a>
                  </p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Funder</dt>
                <dd class="uk-width-expand">
                  <p>Funders that have joined OpenAIRE, i.e. their project data have
                    gone through a validation process.</p>
                  <p>You can visit <a class="https://explore.openaire.eu/search/find" target="_blank">https://explore.openaire.eu/search/find</a>
                    if you would like to explore the research products
                    and projects of all funders in OpenAIRE (the list of funders can be
                    seen under the "Funder" Filter shown on the left side of the page).</p>
                  <p><span class="uk-text-bold">For funder who want to join OpenAIRE: </span><a
                      href="https://www.openaire.eu/funders-how-to-join-guide" target="_blank">https://www.openaire.eu/funders-how-to-join-guide</a>
                  </p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Type</dt>
                <dd class="uk-width-expand">
                  <p>The sub-type of a research outcome (e.g.,
                    a publication can be a pre-print, conference proceeding,
                    article,
                    etc.)</p>
                  <p><span class="uk-text-bold">Resource type mapping: </span>
                    <a href="https://api.openaire.eu/vocabularies/dnet:result_typologies" target="_blank">https://api.openaire.eu/vocabularies/dnet:result_typologies</a>
                    (click on the code to see the specific types for each result type)
                  </p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Access mode or access rights</dt>
                <dd class="uk-width-expand">
                  <p>The best available (across all instances) access rights of
                    a research product</p>
                  <p>Types (by best available):</p>
									<p><span class="uk-text-bold">Open:</span> Open Access</p>
									<p><span class="uk-text-bold">Embargo:</span> Closed for a specific period of time, then open.</p>
									<p><span class="uk-text-bold">Restricted:</span> Definition of restricted may vary by data source, it may refer to access rights being given to registered users, potentially behind a paywall.</p>
									<p><span class="uk-text-bold">Closed:</span> Closed access</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">CC license</dt>
                <dd class="uk-width-expand">
                  <p>A Creative Commons copyright license <a href="(https://creativecommons.org/)" target="_blank">(https://creativecommons.org/)</a>
                  </p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">PID (persistent identifier)</dt>
                <dd class="uk-width-expand">
                  <p>A long-lasting reference to a resource</p>
                  <p><span class="uk-text-bold">Types: </span> <a
                      href="http://api.openaire.eu/vocabularies/dnet:pid_types" target="_blank">http://api.openaire.eu/vocabularies/dnet:pid_types</a>
                  </p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Context</dt>
                <dd class="uk-width-expand">
                  Related research community, initiative or infrastructure.
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Journal</dt>
                <dd class="uk-width-expand">
                  The scientific journal an article is published in.
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Publisher</dt>
                <dd class="uk-width-expand">
                  The publisher of the venue (journal, book, etc.) of a research product.
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1 uk-text-primary">Data sources (content providers)</dt>
                <dd class="uk-width-expand">
                  <p>The different data sources ingested in the OpenAIRE Research Graph.</p>
                  <div class="uk-text-bold">Data Source Types:</div>
                  <ul class="uk-list uk-list-disc">
                    <li>Repositories</li>
                    <li>Open Access Publishers & Journals</li>
                    <li>Aggregators</li>
                    <li>Entity Registries</li>
                    <li>Journal Aggregators</li>
                    <li>CRIS (Current Research Information System)</li>
                  </ul>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Repositories</dt>
                <dd class="uk-width-expand">
                  Information systems where scientists upload the bibliographic metadata and payloads of their
                  research products (e.g. PDFs of their scientific articles, CSVs of their data,
                  archive with their
                  software), due to obligations from their organizations, their
                  funders, or due to community practices
                  (e.g. ArXiv, Europe PMC, Zenodo).
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Open Access Publishers & Journals</dt>
                <dd class="uk-width-expand">
                  Information systems of open access publishers or relative journals, which offer bibliographic
                  metadata and PDFs of their published articles.
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Aggregators</dt>
                <dd class="uk-width-expand">
                  Information systems that collect descriptive metadata about research products
                  from multiple sources
                  in order to enable cross-data source discovery of given research products (e,g,
                  DataCite,
                  BASE, DOAJ).
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">Entity Registries</dt>
                <dd class="uk-width-expand">
                  Information systems created with the intent of maintaining authoritative registries of given
                  entities in the scholarly communication, such as OpenDOAR for the institutional repositories, re3data
                  for the data repositories, CORDA and other funder databases
                  for projects and funding information.
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-5@m uk-width-1-1">CRIS (Current Research Information System)</dt>
                <dd class="uk-width-expand">
                  Information systems adopted by research and academic organizations to
                  keep track of their research
                  administration records and relative results; examples of CRIS content are articles
                  or research data funded
                  by projects, their principal investigators, facilities acquired
                  thanks to funding, etc.
                </dd>
              </div>
            </dl>
          </li>
          <li>
            <div class="uk-text-center uk-padding">
							All attributes in this tab are constructed by us, with the methodology presented below.
            </div>
            <hr>
            <dl class="uk-description-list uk-description-list-divider">
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Attribute</dt>
                <dd class="uk-width-1-3@m uk-width-1-1 uk-text-bold">Definition</dd>
                <dd class="uk-width-1-3@m uk-width-1-1 uk-text-bold">How we build it</dd>
              </div>
              <hr>
              <div class="uk-padding-small uk-text-bold uk-text-primary">
                Journal Business Models
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Fully Open Access (OA)</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>A journal that publishes only in open access.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>We follow <a target="_blank" href="https://support.unpaywall.org/support/solutions/articles/44001792752-how-do-we-decide-if-a-given-journal-is-fully-oa-">Unpaywall’s approach</a> on defining fully Open Access journals and publishers and we construct the lists of the latter using Unpaywall data.</p>
                  <p>In brief, a journal is fully Open Access if one or more of the following occur: </p>
                  <ol>
                    <li>It is in the Directory of Open Access Journals (DOAJ)</li>
                    <li>It has a known fully OA Publisher (curated list).</li>
                    <li>It only publishes OA articles.</li>
                  </ol>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Subscription</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>A journal that charges for access to its articles.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>Journals without any open access articles.</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Hybrid</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>A subscription journal where some of its articles are open access.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>Journals with open access articles that are not fully OA journals.</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Transformative</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>"A Transformative Journal is a subscription/hybrid journal that is actively committed to
                    transitioning to a fully Open Access journal.</p>
                  <p>In addition, a Transformative Journal must:</p>
                  <ul>
                    <li>gradually increase the share of Open Access content; and</li>
                    <li>offset subscription income from payments for publishing services (to avoid double payments)."
                    </li>
                  </ul>
                  <p>Source: <a href="https://www.coalition-s.org/transformative-journals-faq/" target="_blank">Plan S initiative</a></p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>
										We identify Transformative Journals  by ISSN matching with the publicly available <a href="https://journalcheckertool.org/transformative-journals/" target="_blank">Transformative Journals data</a> from Plan S initiative.
                  </p>
                </dd>
              </div>
              <hr>
              <div class="uk-padding-small uk-text-bold uk-text-primary">
                Journal APC Business Models
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Diamond OA</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>A fully OA journal that does not charge article processing charges (APCs).</p>
									<p>In other words, fully OA journals are either diamond, or charge APCs.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>
									We obtain APC data from DOAJ using <a href="https://doaj.org/docs/public-data-dump/" target="_blank">DOAJ’s Public Data Dump</a> (an exportable version of the journal metadata). We used it to determine whether a particular fully OA journal charges APCs.
									</p>
                </dd>
              </div>
              <hr>
              <div class="uk-padding-small uk-text-bold uk-text-primary">
                Routes to Open Access (OA)
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Green OA</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>An open access scientific publication deposited in a repository</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>As in definition</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Gold OA</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>A scientific publication published in a fully OA journal.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>We define fully OA journals above.</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Hybrid OA</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>An open access scientific publication published in a hybrid journal with an open license.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>We define hybrid journals above.</p>
                  <p>At this point we consider only CC licenses “open”. We are currently working on cleaning non-CC
                    licenses as well to identify other open ones.</p>
                  <p>In principle, this means that we may be underestimating the number of hybrid OA articles and
                    overestimating the number of bronze.</p>
                </dd>
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Bronze OA</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>An open access scientific publication published in a hybrid journal without an open license.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">

                </dd>
              </div>
              <hr>
              <div class="uk-padding-small uk-text-bold uk-text-primary">
                Miscellaneous
              </div>
              <hr>
              <div class="uk-grid uk-padding-small" uk-grid>
                <dt class="uk-width-1-3@m uk-width-1-1">Downloads</dt>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>The number of downloads of a publication’s full text in a specific time frame, from a given set of
                    data sources.</p>
                </dd>
                <dd class="uk-width-1-3@m uk-width-1-1">
                  <p>We utilize the usage data for the downloads from <a href="https://www.openaire.eu/guides-usage-counts" target="_blank">OpenAIRE’s Usage Counts service</a> that harvests it from a set of
                    datasources. The time range of available downloads varies for each datasource.</p>
                </dd>
              </div>
              <hr>
            </dl>
          </li>
        </ul>
        <!-- <div class="uk-margin-medium-top">
          <icon name="graph" customClass="text-graph"></icon>
          <span class="uk-margin-small-left uk-text-meta">More information for </span>
          <a href="https://graph.openaire.eu" class="text-graph">OpenAIRE Research Graph</a>
          <span class="uk-text-meta">.</span>
        </div> -->
      </div>
    </div>
  `
})
export class TerminologyComponent implements OnInit, OnDestroy {
  public tab: 'entities' | 'attributes' = 'entities';
  private subscriptions: any[] = [];
  public openaireEntities = OpenaireEntities;
  public breadcrumbs: Breadcrumb[] = [{name: 'home', route: '/'}, {name: 'Resources - Terminology and construction', keepFormat: true}];
	public graph_offset: number = 0;
	public graph_height: number = 0;
  @ViewChild("graph_element") graph_element;
  
  constructor(private seoService: SEOService,
              private meta: Meta,
              private router: Router,
              private route: ActivatedRoute,
              private title: Title,
							private cdr: ChangeDetectorRef) {
  }
  
  ngOnInit() {
    this.subscriptions.push(this.route.params.subscribe(params => {
      const description = "Monitor | Terminology and construction";
      const title = "Monitor | Terminology and construction";
      this.metaTags(title, description);
      this.breadcrumbs[0].route = '/' + (params['stakeholder']?params['stakeholder']:'');
      this.breadcrumbs[0].name = (params['stakeholder']?'dashboard':'home');
    }));
  }

	ngAfterViewInit() {
    if (typeof document !== 'undefined') {
      if(this.graph_element) {
        this.observeGraphElement();
      }
    }
  }

	ngAfterContentChecked() {
    if(this.graph_element && typeof document !== 'undefined') {
      this.graph_offset = this.calcGraphOffset(this.graph_element.nativeElement);
    }
  }
  
  ngOnDestroy() {
    this.subscriptions.forEach(subscription => {
      if (subscription instanceof Subscription) {
        subscription.unsubscribe();
      }
    });
  }

	public observeGraphElement() {
		let resizeObs = new ResizeObserver(entries => {
      entries.forEach(entry => {
        setTimeout(() => {
          this.graph_offset = this.calcGraphOffset(entry.target);
          this.cdr.detectChanges();
        });
      })
    });
    this.subscriptions.push(resizeObs);
    resizeObs.observe(this.graph_element.nativeElement);
	}

	calcGraphOffset(element) {
    this.graph_height = element.offsetHeight;
    return window.innerHeight-this.graph_height;
  }
  
  metaTags(title, description) {
    const url = properties.domain + properties.baseLink + this.router.url;
    this.seoService.createLinkForCanonicalURL(url, false);
    this.meta.updateTag({content: url}, "property='og:url'");
    this.meta.updateTag({content: description}, "name='description'");
    this.meta.updateTag({content: description}, "property='og:description'");
    this.meta.updateTag({content: title}, "property='og:title'");
    this.title.setTitle(title);
  }
}