import {Injectable} from '@angular/core'; import {HttpClient, HttpErrorResponse} from "@angular/common/http"; import {throwError} from 'rxjs'; import {ResultLandingInfo} from '../../utils/entities/resultLandingInfo'; import {EnvProperties} from '../../utils/properties/env-properties'; import {ParsingFunctions} from '../landing-utils/parsingFunctions.class'; import {map} from "rxjs/operators"; import {HostedByCollectedFrom, Organization} from "../../utils/result-preview/result-preview"; import {Dates, Identifier, StringUtils} from "../../utils/string-utils.class"; import {properties} from "../../../../environments/environment"; import {HelperFunctions} from "../../utils/HelperFunctions.class"; import {SearchFields} from "../../utils/properties/searchFields"; @Injectable() export class ResultLandingService { constructor(private http: HttpClient) { this.parsingFunctions = new ParsingFunctions(); } public parsingFunctions: ParsingFunctions; resultLandingInfo: ResultLandingInfo; private buildResultLandingInfoUrl(id: string, identifier: Identifier, type: string): string { if (id) { let url = properties.searchAPIURLLAst; if (type === 'publication') { url += 'publications/'; } else if (type === 'dataset') { url += 'datasets/'; } else if (type === 'software') { url += 'software/'; } else if (type === 'orp' || type === 'other') { url += 'other/'; } else if (type === 'result') { url += 'results/'; } url += id + '?format=json'; return url; } else if (identifier) { // pid = "10.3389/fphys.2014.00466"; let url = properties.searchAPIURLLAst + "resources2"; url += "?query=(pid exact \"" + encodeURIComponent(identifier.id) + "\")&type="; if (type === 'publication') { url += 'publications'; } else if (type === 'dataset') { url += 'datasets'; } else if (type === 'software') { url += 'software'; } else if (type === 'orp') { url += 'other'; } else if (type === 'result') { url += 'results'; } url += "&format=json"; return url; } } getResultLandingInfo(id: string, identifier: Identifier, type: string, subjectsVocabulary: any, properties: EnvProperties): any { let url: string = this.buildResultLandingInfoUrl(id, identifier, type); let finalUrl: string = (properties.useCache) ? (properties.cacheUrl + encodeURIComponent(url)) : url; return this.http.get(finalUrl) .pipe(map(res => { if (!id && identifier) { if (!res['results'] || res['results'].length == 0) { throw new HttpErrorResponse({ status: 404, statusText: "Not found", url: finalUrl, error: "Http failure response for " + finalUrl + ": 404 Not Found" }); } return res['results'][0]; } else { return res; } })) .pipe(map(res => [res['result']['header']['dri:status'], res['result']['metadata']['oaf:entity'], res])) .pipe(map(res => [ res[1]['oaf:result'], // 0 res[1]['oaf:result']['title'], // 1 res[1]['oaf:result']['rels']['rel'], // 2 res[1]['oaf:result']['children'], // 3 res[1]['oaf:result']['pid'], // 4 res[1]['oaf:result']['journal'], // 5 res[1]['oaf:result']['language'], // 6 res[1]['oaf:result']['eoscifguidelines'], // 7 res[1]['oaf:result']['subject'], // 8 res[1]['oaf:result']['context'], // 9 res[1]['oaf:result']['creator'], // 10 res[1]['oaf:result']['country'], // 11 res[1]['oaf:result']['programmingLanguage'], // 12 - software //res[1]['oaf:result']['resulttype'], (res[1]['extraInfo'] !== undefined && res[1]['extraInfo']['references'] !== undefined) ? res[1]['extraInfo']['references']['reference'] : null, // 13 res[0], // 14 res[2], // 15 ])) .pipe(map(res => this.parseResultLandingInfo(res, subjectsVocabulary, properties))); } // getProvenanceActionVocabulary (properties: EnvProperties): any { // let url = properties.vocabulariesAPI+"dnet:provenanceActions.json"; // // return this.http.get((properties.useCache) ? (properties.cacheUrl + encodeURIComponent(url)) : url) // .pipe(map(res => res['terms'])) // .pipe(map(res => this.parseProvenanceActionVocabulary(res, properties))); // } // // parseProvenanceActionVocabulary(terms: any, properties: EnvProperties) { // var provenanceActionVocabulary: {} = {}; // for(let term of terms) { // provenanceActionVocabulary[term.code] = term.englishName; // } // return provenanceActionVocabulary; // } private handleError(error: HttpErrorResponse) { // in a real world app, we may send the error to some remote logging infrastructure // instead of just logging it to the console console.log(error); return throwError(error || 'Server error'); } parseResultLandingInfo(data: any, subjectsVocabulary: any, properties: EnvProperties): any { this.resultLandingInfo = new ResultLandingInfo(); // res this.resultLandingInfo.record = data[15]; this.resultLandingInfo.objIdentifier = data[15]["result"]["header"]["dri:objIdentifier"]; this.resultLandingInfo.relcanId = ParsingFunctions.parseRelCanonicalId(this.resultLandingInfo.record, "result"); this.resultLandingInfo.resultType = data[0].resulttype.classid; // res['result']['metadata']['oaf:entity']['oaf:result'] if (data[0] != null) { let date: string = (data[0].dateofacceptance ? data[0].dateofacceptance : '') + ''; // transform to string in case it is an integer this.resultLandingInfo.date = (date && (date).indexOf('-') !== -1) ? date.split('-')[0] : date; this.resultLandingInfo.dateofacceptance = data[0].dateofacceptance ? Dates.getDate(data[0].dateofacceptance) : null; this.resultLandingInfo.publisher = data[0].publisher; this.resultLandingInfo.description = this.parsingFunctions.parseDescription(data[0] && data[0].description ? data[0].description : []); this.resultLandingInfo.embargoEndDate = data[0].embargoenddate ? Dates.getDate(data[0].embargoenddate) : null; if(data[0].hasOwnProperty("publiclyfunded") && data[0].publiclyfunded) { this.resultLandingInfo.publiclyFunded = data[0].publiclyfunded; } if((data[0].hasOwnProperty("isgreen") && data[0].isgreen) || (data[0].hasOwnProperty("openaccesscolor") && data[0].openaccesscolor) || (data[0].hasOwnProperty("isindiamondjournal") && data[0].isindiamondjournal)) { this.resultLandingInfo.oaRoutes = { "green": data[0].isgreen, "oaColor": data[0].openaccesscolor, "isInDiamondJournal":data[0].isindiamondjournal }; } } if (data[0]['bestaccessright'] && data[0]['bestaccessright'].hasOwnProperty("classname")) { this.resultLandingInfo.accessMode = data[0]['bestaccessright'].classname; } // res['result']['metadata']['oaf:entity']['oaf:result']['title'] if (data[1] != null) { if (Array.isArray(data[1])) { for (let i = 0; i < data[1].length; i++) { if (data[1][i] && data[1][i].content) { if (!this.resultLandingInfo.title || data[1][i].classid == "main title") { this.resultLandingInfo.title = StringUtils.HTMLToString(String(data[1][i].content)); } if (!this.resultLandingInfo.subtitle && data[1][i].classid === 'subtitle') { this.resultLandingInfo.subtitle = StringUtils.HTMLToString(String(data[1][i].content)); } // if(data[1][i].classid == "main title") { // break; // } } } if (this.resultLandingInfo.title === this.resultLandingInfo.subtitle) { this.resultLandingInfo.subtitle = ""; } if (!this.resultLandingInfo.title) { this.resultLandingInfo.title = ""; } // this.resultLandingInfo.title = (data[1][0] && data[1][0].content) ? String(data[1][0].content) : ""; } else { this.resultLandingInfo.title = (data[1] && data[1].content) ? StringUtils.HTMLToString(String(data[1].content)) : ""; } } // res['result']['metadata']['oaf:entity']['oaf:result']['rels']['rel'] if (data[2] != null) { let relation; let length = Array.isArray(data[2]) ? data[2].length : 1; for (let i = 0; i < length; i++) { relation = Array.isArray(data[2]) ? data[2][i] : data[2]; if (relation.hasOwnProperty("to")) { if (relation['to'].class && relation['to'].class.toLowerCase() == "isproducedby") { this.resultLandingInfo.fundedByProjects = this.parsingFunctions.parseFundingByProjects(this.resultLandingInfo.fundedByProjects, relation); } if (relation['to'].scheme && relation['to'].scheme == "dnet:result_result_relations") { let relationName: string = relation.to.class; if (!this.resultLandingInfo.relatedClassFilters.has(relationName)) { this.resultLandingInfo.relatedClassFilters.add(relationName); } let provenanceAction: string = relation.provenanceaction; this.resultLandingInfo.relatedResults = this.parsingFunctions.parseResults(this.resultLandingInfo.relatedResults, relation, provenanceAction, relationName); } else if (relation['to'].class && relation['to'].class.toLowerCase() == "hasauthorinstitution") { this.resultLandingInfo.organizations = this.parseRelatedOrganizations(this.resultLandingInfo.organizations, relation); } else if (relation['to'].scheme && relation['to'].scheme == "dnet:result_datasource_relations") { let relationName: string = relation.to.class; if (!this.resultLandingInfo.relatedServicesClassFilters.has(relationName)) { this.resultLandingInfo.relatedServicesClassFilters.add(relationName); } let provenanceAction: string = relation.provenanceaction; // this.resultLandingInfo.relatedResults = this.parsingFunctions.parseResults(this.resultLandingInfo.relatedResults, relation, provenanceAction, relationName); if (this.resultLandingInfo.relatedServices == undefined) { this.resultLandingInfo.relatedServices = []; } this.resultLandingInfo.relatedServices = this.parsingFunctions.parseDatasources(this.resultLandingInfo.relatedServices, relation, provenanceAction, relationName); } } } } // res['result']['metadata']['oaf:entity']['oaf:result']['children'] if (data[3] != null) { if (data[3].hasOwnProperty("result")) { this.resultLandingInfo.deletedByInferenceIds = []; let length = Array.isArray(data[3]['result']) ? data[3]['result'].length : 1; for (let i = 0; i < length; i++) { let result = Array.isArray(data[3]['result']) ? data[3]['result'][i] : data[3]['result']; this.resultLandingInfo.deletedByInferenceIds.push(result.objidentifier); } this.resultLandingInfo.children = data[3]['result']; } if (data[3].hasOwnProperty("instance")) { this.resultLandingInfo.hostedBy_collectedFrom = new Array(); this.resultLandingInfo.types = new Array(); let types = new Set(); let counter = 0; let instance; let length = Array.isArray(data[3]['instance']) ? data[3]['instance'].length : 1; for (let i = 0; i < length; i++) { instance = Array.isArray(data[3]['instance']) ? data[3]['instance'][i] : data[3]['instance']; this.parsingFunctions.parseTypes(this.resultLandingInfo.types, types, instance); if (instance.hasOwnProperty("webresource")) { let url; if (!Array.isArray(instance['webresource'])) { url = instance['webresource'].url; } else { url = instance['webresource'][0].url; } if (url.includes('&')) { url = url.replace(/&/gmu, '&'); } /**********************************************************/ if (instance.hasOwnProperty("hostedby")) { this.parsingFunctions.parseHostedBy_collectedFrom(this.resultLandingInfo.hostedBy_collectedFrom, instance, url, this.resultLandingInfo.accessMode); } /**********************************************************/ } } /* Order Download from via openness*/ this.resultLandingInfo.hostedBy_collectedFrom.sort(this.parsingFunctions.compareHostedByCollectedFrom); } if (data[3].hasOwnProperty("externalreference")) { let externalResults: Map> = this.parseBioentitiesAndSoftware(data[3]); this.resultLandingInfo.bioentities = externalResults; } } // res['result']['metadata']['oaf:entity']['oaf:result']['pid'] if (data[4] != null) { this.resultLandingInfo.identifiers = this.parsingFunctions.parseIdentifiers(data[4]); } // res['result']['metadata']['oaf:entity']['oaf:result']['journal'] if (data[5] != null) { this.resultLandingInfo.journal = { "journal": "", "issn": "", "lissn": "", "eissn": "", "issue": "", "volume": "", "start_page": "", "end_page": "" } this.resultLandingInfo.journal['journal'] = data[5].content; this.resultLandingInfo.journal['issn'] = data[5].issn; this.resultLandingInfo.journal['lissn'] = data[5].lissn; this.resultLandingInfo.journal['eissn'] = data[5].eissn; this.resultLandingInfo.journal['issue'] = data[5].iss; this.resultLandingInfo.journal['volume'] = data[5].vol; this.resultLandingInfo.journal['start_page'] = data[5].sp; this.resultLandingInfo.journal['end_page'] = data[5].ep; } // res['result']['metadata']['oaf:entity']['oaf:result']['language'] if (data[6] != null) { this.resultLandingInfo.languages = this.parsingFunctions.parseLanguages(data[6]); // let languagesAndCodes: string[][] = this.parsingFunctions.parseLanguages(data[6]); // this.resultLandingInfo.languages = languagesAndCodes[0]; // this.resultLandingInfo.languageCodes = languagesAndCodes[1]; } // res['result']['metadata']['oaf:entity']['oaf:result']['country'] if (data[11] != null) { this.resultLandingInfo.countries = this.parsingFunctions.parseCountries(data[11]); } // res['result']['metadata']['oaf:entity']['oaf:result']['eoscifguidelines'] if (data[7] != null) { this.resultLandingInfo.eoscSubjects = this.parsingFunctions.parseEoscSubjects(data[7]); } // res['result']['metadata']['oaf:entity']['oaf:result']['subject'] if (data[8] != null) { let subjectResults: [string[], Map, Map, string[], string[]] = this.parsingFunctions.parseAllSubjects(data[8], subjectsVocabulary); this.resultLandingInfo.subjects = subjectResults[0]; this.resultLandingInfo.otherSubjects = subjectResults[1]; this.resultLandingInfo.classifiedSubjects = subjectResults[2]; if (subjectResults[3]) { let searchFieldsHelper: SearchFields = new SearchFields(); subjectResults[3].forEach(element => { this.resultLandingInfo.fos.push( {id: element, label: searchFieldsHelper.getFosParameter() == "foslabel" ? element.replace(/^\d+/, '').trim() : element} ); }); } if (this.resultLandingInfo.fos) { this.resultLandingInfo.fos.sort((a, b) => a.id.localeCompare(b.id)); } if(properties.dashboard != "irish") { this.resultLandingInfo.sdg = subjectResults[4]; if (this.resultLandingInfo.sdg) { this.resultLandingInfo.sdg.sort((a, b) => { return HelperFunctions.sortSDGs(a, b); }) } } // if(!this.resultLandingInfo.eoscSubjects) { // this.resultLandingInfo.eoscSubjects = subjectResults[5]; // } } this.resultLandingInfo.hostedBy_collectedFrom = this.parsingFunctions.addPublisherToHostedBy_collectedFrom( this.resultLandingInfo.hostedBy_collectedFrom, this.resultLandingInfo.publisher, this.resultLandingInfo.journal?.journal, this.resultLandingInfo.identifiers); // res['result']['metadata']['oaf:entity']['oaf:result']['programmingLanguage'] if (data[12] != null) { this.resultLandingInfo.programmingLanguages = this.parsingFunctions.parseProgrammingLanguages(data[12]); } // res['result']['metadata']['oaf:entity']['extraInfo']['references']['reference'] if (data[13] != null) { this.resultLandingInfo.references = this.parsingFunctions.parseReferences(data[13]); } // res['result']['metadata']['oaf:entity']['oaf:result']['context'] if (data[9] != null) { this.resultLandingInfo.contexts = this.parsingFunctions.parseContexts(data[9]); } // res['result']['header']['dri:status'] if (data[14] != null && data[14] == "under curation") { this.resultLandingInfo.underCurationMessage = true; } else { this.resultLandingInfo.underCurationMessage = false; } // res['result']['metadata']['oaf:entity']['oaf:result']['creator'] if (data[10] != null) { if (this.resultLandingInfo.authors == undefined) { this.resultLandingInfo.authors = new Array<{ "fullName": string, "orcid": string, "orcid_pending": string }>(); } let authors = data[10]; let length = Array.isArray(authors) ? authors.length : 1; for (let i = 0; i < length; i++) { let author = Array.isArray(authors) ? authors[i] : authors; if (author) { if (author.orcid) { author.orcid = author.orcid.toUpperCase(); } if (author.orcid_pending) { author.orcid_pending = author.orcid_pending.toUpperCase(); } if(this.resultLandingInfo['authors'][author.rank] && this.resultLandingInfo['authors'][author.rank].fullName == author.content) { if(!author.orcid && this.resultLandingInfo['authors'][author.rank].orcid) { author.orcid = this.resultLandingInfo['authors'][author.rank].orcid; } else if(!author.orcid_pending && this.resultLandingInfo['authors'][author.rank].orcid_pending) { author.orcid_pending = this.resultLandingInfo['authors'][author.rank].orcid_pending; } } this.resultLandingInfo['authors'][author.rank] = { "fullName": author.content, "orcid": author.orcid, "orcid_pending": author.orcid_pending }; } } this.resultLandingInfo.authors = this.resultLandingInfo.authors.filter(function (item) { return (item != undefined && item.fullName != undefined); }); } // res['result']['metadata']['oaf:entity']['oaf:result']['measure'] if (data[0]?.measure) { this.resultLandingInfo.measure = this.parsingFunctions.parseMeasures(data[0].measure); } this.resultLandingInfo.relatedResults = this.parsingFunctions.sortByPercentage(this.resultLandingInfo.relatedResults); return this.resultLandingInfo; } parseRelatedOrganizations(organizations: Organization[], relation: any): Organization[] { if (organizations == undefined) { organizations = [] } let organization: { "name": string, "shortname": string, "id": string, "websiteUrl": string, "country": string, "trust": number } = { name: "", shortname: "", id: "", websiteUrl: "", country: "", trust: null }; organization.id = relation['to'].content; organization.name = relation.legalname; organization.shortname = relation.legalshortname; organization.websiteUrl = relation.websiteurl; if (relation.country) { organization.country = relation.country.classname; } if (relation.trust) { organization.trust = Math.round(relation.trust * 100); } organizations.push(organization); return organizations; } parseBioentitiesAndSoftware(children: any): Map> { let bioentities: Map>; let length = Array.isArray(children['externalreference']) ? children['externalreference'].length : 1; let externalreference; for (let i = 0; i < length; i++) { externalreference = Array.isArray(children['externalreference']) ? children['externalreference'][i] : children['externalreference']; if (externalreference.hasOwnProperty("qualifier")) { if (externalreference['qualifier'].classid == "accessionNumber") { if (bioentities == undefined) { bioentities = new Map>(); } if (!bioentities.has(externalreference.sitename)) { bioentities.set(externalreference.sitename, new Map()); } bioentities.get(externalreference.sitename).set(externalreference.refidentifier, externalreference.url); } } } return bioentities; } getEnermapsDetails(id: string) { let url = properties.enermapsURL + "/api/db/metadata?shared_id=eq." + id; return this.http.get((properties.useLongCache) ? (properties.cacheUrl + encodeURIComponent(url)) : url) // return this.http.get(url) .pipe(map(res => this.parseEnermapsDetails(res))); } parseEnermapsDetails(response: any) { let details = Array.isArray(response) ? response[0] : response; let metadata = (details && details.metadata) ? details.metadata : null; let entries = []; let keys = metadata ? Object.keys(metadata) : null; for (let key of keys) { if (key != "shared_id" && key && metadata[key]) { entries.push([key + "", metadata[key] + ""]); } } return entries; } }