From ed9faef7c89354f05365c74a88bfcf0acdc9528d Mon Sep 17 00:00:00 2001
From: sosguns2002 <sospioneer2002@gmail.com>
Date: Wed, 28 Feb 2018 13:30:50 +0200
Subject: [PATCH] Angular4 frontend added

---
 interactive-mining-angular-frontend           |    1 +
 .../madoap/.gitignore                         |    0
 .../madoap/src/.idea/modules.xml              |    8 +
 .../madoap/src/.idea/src.iml                  |   12 +
 .../madoap/src/.idea/workspace.xml            |  161 ++
 .../madoap/src/README                         |    0
 .../madoap/src/etc/init.d/oapwebserver        |    0
 .../madoap/src/madapps.py                     |    0
 .../madoap/src/madserver.py                   |    0
 .../madoap/src/madserverssl.py                |    0
 .../madoap/src/madserverv2.py                 |    0
 .../madoap/src/madserverv3.py                 | 1589 +++++++++++++++++
 .../madoap/src/settings.py                    |    0
 .../madoap/src/static/BG_Footer_2.jpg         |  Bin
 .../madoap/src/static/OA CONNECT_A.png        |  Bin
 .../madoap/src/static/OA CONNECT_B.png        |  Bin
 .../madoap/src/static/OA DISCOVER_A.png       |  Bin
 .../madoap/src/static/OA DISCOVER_B.png       |  Bin
 .../madoap/src/static/OpenAIREplus_logo.png   |  Bin
 .../madoap/src/static/OpenAIREplus_logo1.png  |  Bin
 .../madoap/src/static/OpenAIREplus_logo2.png  |  Bin
 .../madoap/src/static/ResizeSensor.js         |    0
 .../madoap/src/static/accessURL.js            |    0
 .../madoap/src/static/ajax-loader.gif         |  Bin
 .../madoap/src/static/animations.css          |    0
 .../madoap/src/static/comments.css            |    0
 .../madoap/src/static/configure-profile.js    |    0
 .../src/static/create-upload-profile.js       |    0
 .../madoap/src/static/custom.css              |    0
 .../madoap/src/static/database.db             |  Bin
 .../madoap/src/static/dl119_files/80x15.png   |  Bin
 .../src/static/dl119_files/Home-icon.png      |  Bin
 .../Logo_Horizontal_white_small.png           |  Bin
 .../madoap/src/static/dl119_files/custom.css  |    0
 .../static/dl119_files/ec_logo_inv_small.png  |  Bin
 .../madoap/src/static/dl119_files/theme.css   |    0
 .../src/static/dl119_files/uikit-icons-max.js |    0
 .../madoap/src/static/dl119_files/uikit.css   |    0
 .../madoap/src/static/dl119_files/uikit.js    |    0
 .../madoap/src/static/egi_sample.tsv          |    0
 .../madoap/src/static/error-handling.js       |    0
 .../madoap/src/static/exampleDocs.txt         |    0
 .../madoap/src/static/exampleProfile.oamp     |  Bin 5120 -> 5120 bytes
 .../madoap/src/static/favicon.ico             |  Bin
 .../madoap/src/static/fp7grants.csv           |    0
 .../madoap/src/static/interactivemining.js    |    0
 .../src/static/interactiveminingExample.txt   |    0
 .../src/static/interactivemining_styles.css   |    0
 .../src/static/jquery.sticky-sidebar.js       |    0
 .../madoap/src/static/save-profile.js         |    0
 .../madoap/src/static/styles.css              |    0
 .../madoap/src/static/tablestyles.css         |    0
 .../madoap/src/static/tc.js                   |    0
 .../madoap/src/static/tcgrey.css              |    0
 .../madoap/src/static/upload-codes.js         |    0
 .../madoap/src/templates/base.html            |    0
 .../madoap/src/templates/base_v2.html         |    0
 .../src/templates/configure_profile.html      |    0
 .../src/templates/configure_profile2.html     |    0
 .../src/templates/create_upload_profile.html  |    0
 .../madoap/src/templates/error_template.html  |    0
 .../src/templates/interactivemining.html      |    0
 .../madoap/src/templates/madappbar.html       |    0
 .../madoap/src/templates/madappview.html      |    0
 .../madoap/src/templates/save_profile.html    |    0
 .../madoap/src/templates/upload_codes.html    |    0
 .../madoap/src/tornado/__init__.py            |    0
 .../madoap/src/tornado/auth.py                |    0
 .../madoap/src/tornado/autoreload.py          |    0
 .../madoap/src/tornado/ca-certificates.crt    |    0
 .../madoap/src/tornado/curl_httpclient.py     |    0
 .../madoap/src/tornado/database.py            |    0
 .../madoap/src/tornado/epoll.c                |    0
 .../madoap/src/tornado/escape.py              |    0
 .../madoap/src/tornado/gen.py                 |    0
 .../madoap/src/tornado/httpclient.py          |    0
 .../madoap/src/tornado/httpserver.py          |    0
 .../madoap/src/tornado/httputil.py            |    0
 .../madoap/src/tornado/ioloop.py              |    0
 .../madoap/src/tornado/iostream.py            |    0
 .../madoap/src/tornado/locale.py              |    0
 .../madoap/src/tornado/netutil.py             |    0
 .../madoap/src/tornado/options.py             |    0
 .../madoap/src/tornado/platform/__init__.py   |    0
 .../madoap/src/tornado/platform/auto.py       |    0
 .../madoap/src/tornado/platform/interface.py  |    0
 .../madoap/src/tornado/platform/posix.py      |    0
 .../madoap/src/tornado/platform/twisted.py    |    0
 .../madoap/src/tornado/platform/windows.py    |    0
 .../madoap/src/tornado/process.py             |    0
 .../madoap/src/tornado/simple_httpclient.py   |    0
 .../madoap/src/tornado/stack_context.py       |    0
 .../madoap/src/tornado/template.py            |    0
 .../madoap/src/tornado/testing.py             |    0
 .../madoap/src/tornado/util.py                |    0
 .../madoap/src/tornado/web.py                 |    0
 .../madoap/src/tornado/websocket.py           |    0
 .../madoap/src/tornado/wsgi.py                |    0
 .../madoap/src/tornado_addons/__init__.py     |    0
 .../madoap/src/tornado_addons/error.py        |    0
 .../madoap/src/tornado_addons/ozhandler.py    |    0
 .../madoap/src/tornado_addons/route.py        |    0
 102 files changed, 1771 insertions(+)
 create mode 160000 interactive-mining-angular-frontend
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/.gitignore (100%)
 create mode 100644 interactive-mining-backend/madoap/src/.idea/modules.xml
 create mode 100644 interactive-mining-backend/madoap/src/.idea/src.iml
 create mode 100644 interactive-mining-backend/madoap/src/.idea/workspace.xml
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/README (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/etc/init.d/oapwebserver (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/madapps.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/madserver.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/madserverssl.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/madserverv2.py (100%)
 create mode 100644 interactive-mining-backend/madoap/src/madserverv3.py
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/settings.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/BG_Footer_2.jpg (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OA CONNECT_A.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OA CONNECT_B.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OA DISCOVER_A.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OA DISCOVER_B.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OpenAIREplus_logo.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OpenAIREplus_logo1.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/OpenAIREplus_logo2.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/ResizeSensor.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/accessURL.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/ajax-loader.gif (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/animations.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/comments.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/configure-profile.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/create-upload-profile.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/custom.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/database.db (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/80x15.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/Home-icon.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/Logo_Horizontal_white_small.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/custom.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/ec_logo_inv_small.png (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/theme.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/uikit-icons-max.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/uikit.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/dl119_files/uikit.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/egi_sample.tsv (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/error-handling.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/exampleDocs.txt (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/exampleProfile.oamp (96%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/favicon.ico (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/fp7grants.csv (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/interactivemining.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/interactiveminingExample.txt (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/interactivemining_styles.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/jquery.sticky-sidebar.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/save-profile.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/styles.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/tablestyles.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/tc.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/tcgrey.css (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/static/upload-codes.js (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/base.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/base_v2.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/configure_profile.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/configure_profile2.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/create_upload_profile.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/error_template.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/interactivemining.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/madappbar.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/madappview.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/save_profile.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/templates/upload_codes.html (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/__init__.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/auth.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/autoreload.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/ca-certificates.crt (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/curl_httpclient.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/database.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/epoll.c (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/escape.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/gen.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/httpclient.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/httpserver.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/httputil.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/ioloop.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/iostream.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/locale.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/netutil.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/options.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/platform/__init__.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/platform/auto.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/platform/interface.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/platform/posix.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/platform/twisted.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/platform/windows.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/process.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/simple_httpclient.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/stack_context.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/template.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/testing.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/util.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/web.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/websocket.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado/wsgi.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado_addons/__init__.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado_addons/error.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado_addons/ozhandler.py (100%)
 rename {interactive-mining-madoap => interactive-mining-backend}/madoap/src/tornado_addons/route.py (100%)

diff --git a/interactive-mining-angular-frontend b/interactive-mining-angular-frontend
new file mode 160000
index 0000000..1300909
--- /dev/null
+++ b/interactive-mining-angular-frontend
@@ -0,0 +1 @@
+Subproject commit 1300909bca20fa744bde85d3f44fda559f43eb93
diff --git a/interactive-mining-madoap/madoap/.gitignore b/interactive-mining-backend/madoap/.gitignore
similarity index 100%
rename from interactive-mining-madoap/madoap/.gitignore
rename to interactive-mining-backend/madoap/.gitignore
diff --git a/interactive-mining-backend/madoap/src/.idea/modules.xml b/interactive-mining-backend/madoap/src/.idea/modules.xml
new file mode 100644
index 0000000..f669a0e
--- /dev/null
+++ b/interactive-mining-backend/madoap/src/.idea/modules.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/src.iml" filepath="$PROJECT_DIR$/.idea/src.iml" />
+    </modules>
+  </component>
+</project>
\ No newline at end of file
diff --git a/interactive-mining-backend/madoap/src/.idea/src.iml b/interactive-mining-backend/madoap/src/.idea/src.iml
new file mode 100644
index 0000000..24643cc
--- /dev/null
+++ b/interactive-mining-backend/madoap/src/.idea/src.iml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="WEB_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$">
+      <excludeFolder url="file://$MODULE_DIR$/.tmp" />
+      <excludeFolder url="file://$MODULE_DIR$/temp" />
+      <excludeFolder url="file://$MODULE_DIR$/tmp" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>
\ No newline at end of file
diff --git a/interactive-mining-backend/madoap/src/.idea/workspace.xml b/interactive-mining-backend/madoap/src/.idea/workspace.xml
new file mode 100644
index 0000000..d8761a5
--- /dev/null
+++ b/interactive-mining-backend/madoap/src/.idea/workspace.xml
@@ -0,0 +1,161 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ChangeListManager">
+    <list default="true" id="87721b4d-4d97-4be6-a992-8fc3bb954cbf" name="Default" comment="" />
+    <ignored path="$PROJECT_DIR$/.tmp/" />
+    <ignored path="$PROJECT_DIR$/temp/" />
+    <ignored path="$PROJECT_DIR$/tmp/" />
+    <option name="EXCLUDED_CONVERTED_TO_IGNORED" value="true" />
+    <option name="TRACKING_ENABLED" value="true" />
+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
+  </component>
+  <component name="FileEditorManager">
+    <leaf SIDE_TABS_SIZE_LIMIT_KEY="300" />
+  </component>
+  <component name="JsBuildToolGruntFileManager" detection-done="true" sorting="DEFINITION_ORDER" />
+  <component name="JsBuildToolPackageJson" detection-done="true" sorting="DEFINITION_ORDER" />
+  <component name="JsGulpfileManager">
+    <detection-done>true</detection-done>
+    <sorting>DEFINITION_ORDER</sorting>
+  </component>
+  <component name="ProjectFrameBounds">
+    <option name="x" value="67" />
+    <option name="y" value="37" />
+    <option name="width" value="1400" />
+    <option name="height" value="986" />
+  </component>
+  <component name="ProjectView">
+    <navigator currentView="ProjectPane" proportions="" version="1">
+      <flattenPackages />
+      <showMembers />
+      <showModules />
+      <showLibraryContents />
+      <hideEmptyPackages />
+      <abbreviatePackageNames />
+      <autoscrollToSource />
+      <autoscrollFromSource />
+      <sortByType />
+      <manualOrder />
+      <foldersAlwaysOnTop value="true" />
+    </navigator>
+    <panes>
+      <pane id="Scratches" />
+      <pane id="ProjectPane">
+        <subPane>
+          <expand>
+            <path>
+              <item name="src" type="b2602c69:ProjectViewProjectNode" />
+              <item name="src" type="462c0819:PsiDirectoryNode" />
+            </path>
+            <path>
+              <item name="src" type="b2602c69:ProjectViewProjectNode" />
+              <item name="src" type="462c0819:PsiDirectoryNode" />
+              <item name="templates" type="462c0819:PsiDirectoryNode" />
+            </path>
+          </expand>
+          <select />
+        </subPane>
+      </pane>
+      <pane id="Scope" />
+    </panes>
+  </component>
+  <component name="PropertiesComponent">
+    <property name="nodejs_interpreter_path.stuck_in_default_project" value="undefined stuck path" />
+    <property name="WebServerToolWindowFactoryState" value="false" />
+    <property name="last_opened_file_path" value="$USER_HOME$/Downloads/interactiveminingv3" />
+    <property name="HbShouldOpenHtmlAsHb" value="" />
+  </component>
+  <component name="RunDashboard">
+    <option name="ruleStates">
+      <list>
+        <RuleState>
+          <option name="name" value="ConfigurationTypeDashboardGroupingRule" />
+        </RuleState>
+        <RuleState>
+          <option name="name" value="StatusDashboardGroupingRule" />
+        </RuleState>
+      </list>
+    </option>
+  </component>
+  <component name="ShelveChangesManager" show_recycled="false">
+    <option name="remove_strategy" value="false" />
+  </component>
+  <component name="SvnConfiguration">
+    <configuration />
+  </component>
+  <component name="TaskManager">
+    <task active="true" id="Default" summary="Default task">
+      <changelist id="87721b4d-4d97-4be6-a992-8fc3bb954cbf" name="Default" comment="" />
+      <created>1515676828039</created>
+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
+      <updated>1515676828039</updated>
+      <workItem from="1515676830017" duration="40000" />
+      <workItem from="1516268684672" duration="19000" />
+    </task>
+    <servers />
+  </component>
+  <component name="TimeTrackingManager">
+    <option name="totallyTimeSpent" value="59000" />
+  </component>
+  <component name="ToolWindowManager">
+    <frame x="67" y="37" width="1400" height="986" extended-state="0" />
+    <layout>
+      <window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="0" side_tool="false" content_ui="combo" />
+      <window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
+      <window_info id="Docker" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
+      <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="7" side_tool="true" content_ui="tabs" />
+      <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
+      <window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
+      <window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
+      <window_info id="Terminal" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
+      <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="2" side_tool="true" content_ui="tabs" />
+      <window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
+      <window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
+      <window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
+      <window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
+      <window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
+      <window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
+      <window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.33" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
+      <window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" show_stripe_button="true" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
+    </layout>
+  </component>
+  <component name="TypeScriptGeneratedFilesManager">
+    <option name="version" value="1" />
+  </component>
+  <component name="VcsContentAnnotationSettings">
+    <option name="myLimit" value="2678400000" />
+  </component>
+  <component name="XDebuggerManager">
+    <breakpoint-manager />
+    <watches-manager />
+  </component>
+  <component name="editorHistoryManager">
+    <entry file="file://$PROJECT_DIR$/templates/base_v2.html">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="0">
+          <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/templates/base.html">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="0">
+          <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/templates/base_v2.html">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="198">
+          <caret line="11" column="41" lean-forward="false" selection-start-line="11" selection-start-column="41" selection-end-line="11" selection-end-column="41" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+  </component>
+</project>
\ No newline at end of file
diff --git a/interactive-mining-madoap/madoap/src/README b/interactive-mining-backend/madoap/src/README
similarity index 100%
rename from interactive-mining-madoap/madoap/src/README
rename to interactive-mining-backend/madoap/src/README
diff --git a/interactive-mining-madoap/madoap/src/etc/init.d/oapwebserver b/interactive-mining-backend/madoap/src/etc/init.d/oapwebserver
similarity index 100%
rename from interactive-mining-madoap/madoap/src/etc/init.d/oapwebserver
rename to interactive-mining-backend/madoap/src/etc/init.d/oapwebserver
diff --git a/interactive-mining-madoap/madoap/src/madapps.py b/interactive-mining-backend/madoap/src/madapps.py
similarity index 100%
rename from interactive-mining-madoap/madoap/src/madapps.py
rename to interactive-mining-backend/madoap/src/madapps.py
diff --git a/interactive-mining-madoap/madoap/src/madserver.py b/interactive-mining-backend/madoap/src/madserver.py
similarity index 100%
rename from interactive-mining-madoap/madoap/src/madserver.py
rename to interactive-mining-backend/madoap/src/madserver.py
diff --git a/interactive-mining-madoap/madoap/src/madserverssl.py b/interactive-mining-backend/madoap/src/madserverssl.py
similarity index 100%
rename from interactive-mining-madoap/madoap/src/madserverssl.py
rename to interactive-mining-backend/madoap/src/madserverssl.py
diff --git a/interactive-mining-madoap/madoap/src/madserverv2.py b/interactive-mining-backend/madoap/src/madserverv2.py
similarity index 100%
rename from interactive-mining-madoap/madoap/src/madserverv2.py
rename to interactive-mining-backend/madoap/src/madserverv2.py
diff --git a/interactive-mining-backend/madoap/src/madserverv3.py b/interactive-mining-backend/madoap/src/madserverv3.py
new file mode 100644
index 0000000..1830fc7
--- /dev/null
+++ b/interactive-mining-backend/madoap/src/madserverv3.py
@@ -0,0 +1,1589 @@
+#!/usr/bin/env python
+#
+# Copyright 2009 Facebook
+#
+# Licensed under the Apache License, Version 2.0 (the "License"); you may
+# not use this file except in compliance with the License. You may obtain
+# a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
+# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
+# License for the specific language governing permissions and limitations
+# under the License.
+import os
+import re
+import os.path
+import tornado.httpserver
+import tornado.autoreload
+import tornado.ioloop
+import tornado.options
+import tornado.web
+import tornado.escape as escape
+import settings as msettings
+import madapps
+import datetime
+import random
+import csv
+from shutil import copyfile
+import itertools
+import email.utils
+import json
+import StringIO
+from tornado.options import define, options, logging
+from tornado_addons import ozhandler
+import copy
+from collections import OrderedDict
+
+
+define("port", default=msettings.WEB_SERVER_PORT, help="run on the given port", type=int)
+
+filteredapps=None
+filteredevals=None
+
+smallgif='GIF89a\1\0\1\0\x80\xff\0\xff\xff\xff\0\0\0,\0\0\0\0\1\0\1\0\0\2\2D\1\0;'
+
+viswidgetmap={
+'motionchart':'google.visualization.MotionChart',
+'table':'google.visualization.Table',
+'linechart':'google.visualization.LineChart',
+'piechart':'google.visualization.PieChart',
+'scatterchart':'google.visualization.ScatterChart',
+'intensitymap':'google.visualization.IntensityMap',
+'geomap':'google.visualization.GeoMap',
+'columnchart':'google.visualization.ColumnChart',
+'barchart':'google.visualization.BarChart',
+'areachart':'google.visualization.AreaChart',
+'annotatedtimeline':'google.visualization.AnnotatedTimeLine',
+'termcloud':'TermCloud',
+}
+
+queries = {}
+
+msettings.viswidgetmap=viswidgetmap
+
+class Application(tornado.web.Application):
+    def __init__(self):
+        handlers = [
+            (r"/getuserid", GetUserIdHandler),
+            (r"/getuserprofiles", GetUserProfilesHandler),
+            (r"/loaduserprofile", LoadUserProfileHandler),
+            (r"/deleteuserprofile", DeleteUserProfileHandler),
+            (r"/createnewprofile", CreateNewProfileHandler),
+            (r"/getexampleprofiles", GetExampleProfilesHandler),
+            (r"/loadexampleprofile", LoadExampleProfileHandler),
+            (r"/uploadprofile", UploadProfileHandler),
+            (r"/alreadyconcept", AlreadyConceptsHandler),
+            (r"/uploadcontentfile", UploadContentFileHandler),
+            (r"/updateconcept", UpdateConceptsHandler),
+            (r"/getdocsamples", GetDocSamplesHandler),
+            (r"/uploaddocuments", UploadDocumentsHandler),
+            (r"/choosedocsample", ChooseDocSampleHandler),
+            (r"/alreadydocuments", AlreadyDocumentsHandler),
+            (r"/runmining", RunMiningHandler),
+            (r"/preparesavedprofile", PrepareSavedProfileHandler),
+            (r"/saveprofile", SaveProfileToDatabaseHandler),
+            (r"/downloadprofile", DownloadProfileHandler),
+            (r"/?$", madAppBarHandler),
+            (r"/[^/]+/?$", madAppHandler),
+            (r"/[^/]+/.+$", madAppDataHandler)
+        ]
+           
+
+        settings = dict(
+            template_path=os.path.join(os.path.dirname(__file__), "templates"),
+            static_path=os.path.join(os.path.dirname(__file__), "static"),
+            xsrf_cookies=False,
+            cookie_secret=msettings.SECRET_KEY,
+            login_url="/auth/login",
+            debug=msettings.DEBUG
+        )
+
+        tornado.web.Application.__init__(self, handlers, **settings)
+
+def auth_callback(request, realm, username, password):
+    if username==msettings.USERNAME and password == msettings.PASSWORD:
+        request.user_id = 1
+        return True
+    else:
+        return False
+
+def getNewUserId():
+    return 'user{0}'.format(datetime.datetime.now().microsecond + (random.randrange(1, 100+1) * 100000))
+
+def getNewProfileId():
+    return 'profile{0}'.format(datetime.datetime.now().microsecond + (random.randrange(1, 100+1) * 100000))
+
+def numberOfGrantsUploaded(user_id, cookie_set):
+    if cookie_set and user_id:
+        file_name = "/tmp/p%s.tsv" % (user_id)
+        if os.path.isfile(file_name):
+            num_lines = sum(1 for line in open(file_name))
+            if str(num_lines) == cookie_set: 
+                return num_lines
+    return 0
+
+def numberOfDocsUploaded(user_id):
+    if user_id:
+        file_name = "/tmp/docs%s.json" % (user_id)
+        if os.path.isfile(file_name):
+            num_lines = sum(1 for line in open(file_name))
+            return num_lines
+    return 0
+
+def loadProfile(profileLocation, user_id):
+    # extract data from profile file
+    import sys
+    sys.path.append(msettings.MADIS_PATH)
+    import madis
+    # get the profile database cursor
+    cursor=madis.functions.Connection(profileLocation).cursor()
+
+    # data to be sent
+    data = {}
+    # Write to csv file the grants ids
+    if len([r for r in cursor.execute("SELECT name FROM sqlite_master WHERE type='table' AND name='grants'")]):
+        cursor.execute("output '/tmp/p{0}.tsv' select c1,c2 from grants".format(user_id))
+        # Get the number of grants uploaded
+        file_name = "/tmp/p%s.tsv" % (user_id)
+        if os.path.isfile(file_name):
+            numberOfGrants = sum(1 for line in open(file_name))
+        data['grants'] = numberOfGrants
+    # write to json the poswords
+    if len([r for r in cursor.execute("SELECT name FROM sqlite_master WHERE type='table' AND name='poswords'")]):
+        results = [r for r in cursor.execute("select c1, c2 from poswords")]
+        data['poswords'] = {value:key for value, key in results}
+    # write to json the negwords
+    if len([r for r in cursor.execute("SELECT name FROM sqlite_master WHERE type='table' AND name='negwords'")]):
+        results = [r for r in cursor.execute("select c1, c2 from negwords")]
+        data['negwords'] = {value:key for value, key in results}
+    # write to json the filters
+    if len([r for r in cursor.execute("SELECT name FROM sqlite_master WHERE type='table' AND name='filters'")]):
+        results = [r for r in cursor.execute("select c1, c2 from filters")]
+        for value, key in results:
+            data[value] = key
+        # data['filters'] = {value:key for value, key in results}
+    cursor.close()
+    return data
+
+def deleteAllUserFiles(user_id):
+    if user_id:
+        file_name = "/tmp/p%s.tsv" % (user_id)
+        if os.path.isfile(file_name):
+            os.remove(file_name)
+        file_name = "/tmp/docs%s.json" % (user_id)
+        if os.path.isfile(file_name):
+            os.remove(file_name)
+
+def loadProfileDocs(user_id, profile_id):
+    # copy unique profile docs file to a general user docs file
+    docs_file_name = "/tmp/docs{0}.json".format(user_id)
+    unique_profile_docs_file_name = "/tmp/OAMiningDocs_{0}_{1}.json".format(user_id,profile_id)
+    copyfile(unique_profile_docs_file_name, docs_file_name)
+
+def loadExampleDocs(user_id):
+    sample_file = open("static/exampleDocs.txt", 'r')
+    # write data to physical file
+    cname = "/tmp/docs{0}.json".format(user_id)
+    fh = open(cname, 'w')
+    while 1:
+        copy_buffer = sample_file.read(1048576)
+        if not copy_buffer:
+            break
+        fh.write(copy_buffer)
+    fh.close()
+    lines_num = sum(1 for line in open(cname))
+
+def loadExampleProfile(user_id):
+    return loadProfile("static/exampleProfile.oamp", user_id)
+
+
+class BaseHandler(ozhandler.DjangoErrorMixin, ozhandler.BasicAuthMixin, tornado.web.RequestHandler):
+    def __init__(self, *args):
+        tornado.web.RequestHandler.__init__(self, *args)
+        if msettings.USERNAME!='':
+            self.hiddenauthget=self.get
+            self.get=self.authget
+        if msettings.RESTRICT_IPS:
+            self.hiddenget=self.get
+            self.get=self.checkwhitelistget
+
+    def authget(self, *args):
+        try:
+            if self.passwordless:
+                self.hiddenauthget(*args)
+                return
+        except:
+            pass
+        
+        if not self.get_authenticated_user(auth_callback, 'stats'):
+            return False
+        self.hiddenauthget(*args)
+
+    def checkwhitelistget(self, *args):
+        if self.request.remote_ip not in msettings.RESTRICT_IP_WHITELIST:
+            raise tornado.web.HTTPError(403)
+        return self.hiddenget(*args)
+
+    def get_current_user(self):
+        return 'anonymous'
+
+    def executequery(self, query, bindings=None):
+        def latinnum(x):
+            x=int(x)
+            lx=""
+            while x>25:
+                lx+=chr( ord('A')+int(x/25) )
+                x%=25
+            lx+=chr(ord('A')+x)
+            return lx
+
+        query=query.rstrip(';\n\s ')
+
+        try:
+            origvars=msettings.madis.functions.variables
+            c=msettings.Connection.cursor().execute(query, localbindings=bindings)
+        except Exception, e:
+            try:
+                c.close()
+            except:
+                pass
+            msettings.madis.functions.variables=origvars
+            self.finish(str(e))
+            if msettings.DEBUG:
+                raise e
+            return
+
+        # Schema from query's description
+        try:
+            schema=c.getdescription()
+        except:
+            c.close()
+            msettings.madis.functions.variables=origvars
+            self.finish()
+            return
+
+        colnames=[]
+        coltypes=[]
+
+        for cname, ctype in schema:
+            if ctype==None:
+                colnames+=[cname]
+                coltypes+=[ctype]
+                continue
+            ctypehead3=ctype.lower()[0:3]
+            if ctypehead3 in ('int', 'rea', 'flo', 'dou', 'num'):
+                ctype='number'
+            else:
+                ctype='string'
+            colnames+=[cname]
+            coltypes+=[ctype]
+
+        try:
+            firstrow=c.next()
+        except StopIteration:
+            c.close()
+            msettings.madis.functions.variables=origvars
+            self.finish()
+            return
+        except Exception, e:
+            c.close()
+            msettings.madis.functions.variables=origvars
+            self.finish(str(e))
+            return
+
+        # Merge with guessed schema from query's first row
+        for cname, ctype, i in zip(colnames, coltypes, xrange(len(colnames))):
+            if ctype==None:
+                frtype=type(firstrow[i])
+                if frtype in (int, float):
+                    coltypes[i]='number'
+                else:
+                    coltypes[i]='string'
+
+        # Write responce's header
+        response={"cols":[]}
+        for name, ctype,num in zip(colnames, coltypes, xrange(len(colnames))):
+            id=latinnum(num)
+            response["cols"]+=[{"id":id, "label":name,"type":ctype}]
+
+        # Write header
+        self.write(json.dumps(response, separators=(',', ':'), sort_keys=True, ensure_ascii=False)[0:-1] + ',"rows":[')
+
+        # Write first line
+        response=json.dumps({"c":[{"v":x} for x in firstrow]}, separators=(',', ':'), sort_keys=True, ensure_ascii=False)
+        self.write(response)
+
+        self.executequeryrow(c, msettings.madis.functions.variables)
+        msettings.madis.functions.variables=origvars
+
+    def executequeryrow(self, cursor, vars):
+        try:
+            try:
+                origvars=msettings.madis.functions.variables
+                msettings.madis.functions.variables=vars
+                buffer=StringIO.StringIO()
+                while buffer.len<30000:
+                    buffer.write(','+json.dumps({"c":[{"v":x} for x in cursor.next()]}, separators=(',', ':'), sort_keys=True, ensure_ascii=False))
+                self.write(buffer.getvalue())
+                self.flush(callback=lambda : self.executequeryrow(cursor, msettings.madis.functions.variables))
+            except StopIteration:
+                cursor.close()
+                self.finish(buffer.getvalue()+']}')
+            finally:
+                msettings.madis.functions.variables=origvars
+        except IOError:
+            msettings.madis.functions.variables=origvars
+            cursor.close()
+            pass
+
+    def serveimage(self, path, mime_type=None):
+        if os.path.sep != "/":
+            path = path.replace("/", os.path.sep)
+        abspath = os.path.abspath(os.path.join(self.settings['static_path'], path))
+
+        if mime_type==None:
+            mime_type='image/'+path[-3:]
+        self.set_header("Content-Type", mime_type)
+
+        # Check the If-Modified-Since, and don't send the result if the
+        # content has not been modified
+        ims_value = self.request.headers.get("If-Modified-Since")
+        if ims_value is not None:
+            date_tuple = email.utils.parsedate(ims_value)
+            if_since = datetime.datetime.fromtimestamp(time.mktime(date_tuple))
+            if if_since >= modified:
+                self.set_status(304)
+                return
+
+        file = open(abspath, "rb")
+        try:
+            self.write(file.read())
+        finally:
+            file.close()
+    
+class HomeHandler(BaseHandler):
+    def get(self):
+        self.render("home.html", settings=msettings)
+
+class madAppBarHandler(BaseHandler):
+    def get(self):
+        self.render('madappbar.html', apps=filteredapps, evals=filteredevals, settings=msettings)
+
+trueset = set([1 , 'on', 'true', 'TRUE'])
+URIdemultiplex = {r"/" + msettings.APPDIRNAME + "/analyze":'projects'
+             , r"/" + msettings.APPDIRNAME + "/datacitations":'datacitations'
+             , r"/" + msettings.APPDIRNAME + "/classifier":'classification'
+             , r"/" + msettings.APPDIRNAME + "/pdbs":'pdb'
+             , r"/" + msettings.APPDIRNAME + "/interactivemining":'interactivemining'}
+
+
+class GetUserIdHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # check if we already gave client a user_id
+            user_id = self.get_secure_cookie('madgikmining')
+            if not user_id:
+                # give him a unique user_id
+                user_id = getNewUserId()
+                self.set_secure_cookie('madgikmining', user_id)
+                # create a database where the user stores his profiles info
+                import sys
+                sys.path.append(msettings.MADIS_PATH)
+                import madis
+                # get the database cursor
+                database_file_name = "/tmp/OAMiningProfilesDatabase_{0}.db".format(user_id)
+                cursor=madis.functions.Connection(database_file_name).cursor()
+                # Create database table
+                cursor.execute("drop table if exists database", parse=False)
+                cursor.execute("create table database(id,name,datecreated,status,matches,docname,docsnumber)", parse=False)
+                cursor.close()
+            self.write(json.dumps({}))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class GetUserProfilesHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # extract data from database
+            import sys
+            sys.path.append(msettings.MADIS_PATH)
+            import madis
+            # database file name
+            database_file_name = "/tmp/OAMiningProfilesDatabase_{0}.db".format(user_id)
+            # get the database cursor
+            cursor=madis.functions.Connection(database_file_name).cursor()
+            # data to be sent
+            data = {}
+            user_profiles = []
+            for r in cursor.execute("SELECT id,name,datecreated,status,matches,docname FROM database"):
+                user_profiles.append({"id":r[0], "name": r[1], "datecreated": r[2], "status": r[3], "matches": r[4], "docname": r[5]})
+                data['profiles'] = user_profiles
+            cursor.close()
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class LoadUserProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # get data
+            profile_id = json.loads(self.request.body)['id']
+            # delete profile from database
+            import sys
+            sys.path.append(msettings.MADIS_PATH)
+            import madis
+            # database file name
+            database_file_name = "/tmp/OAMiningProfilesDatabase_{0}.db".format(user_id)
+            # get the database cursor
+            cursor=madis.functions.Connection(database_file_name).cursor()
+            # check if this profile exists
+            profile_data = [r for r in cursor.execute('select docname,docsnumber from database where id="{0}"'.format(profile_id))]
+            if len(profile_data) == 0:
+                self.set_status(400)
+                self.write("There is no profile with this name")
+                cursor.close()
+                return
+            cursor.close()
+            # check if profile file exists on the disk
+            file_name = "/tmp/OAMiningProfile_%s_%s.oamp" % (user_id,profile_id)
+            if not os.path.isfile(file_name):
+                self.set_status(400)
+                self.write("There is no profile file with this name")
+                return
+            # reset everything
+            deleteAllUserFiles(user_id)
+            loadProfileDocs(user_id,profile_id)
+            data = loadProfile(file_name, user_id)
+            data['docname'] = profile_data[0][0]
+            data['docsnumber'] = profile_data[0][1]
+            self.set_secure_cookie('madgikmining_grantsuploaded', str(data['grants']))
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class DeleteUserProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # get data
+            profile_id = json.loads(self.request.body)['id']
+            # delete profile from database
+            import sys
+            sys.path.append(msettings.MADIS_PATH)
+            import madis
+            # database file name
+            database_file_name = "/tmp/OAMiningProfilesDatabase_{0}.db".format(user_id)
+            # get the database cursor
+            cursor=madis.functions.Connection(database_file_name).cursor()
+            # data to be sent
+            cursor.execute('delete from database where id="{0}"'.format(profile_id), parse=False)
+            cursor.close()
+            # delete profile from disk
+            file_name = "/tmp/OAMiningProfile_%s_%s.oamp" % (user_id,profile_id)
+            if os.path.isfile(file_name):
+                os.remove(file_name)
+            self.write(json.dumps({}))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class GetExampleProfilesHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            data = {}
+            example_profiles = []
+            example_profiles.append({'name': 'Egi', 'contents': 25, 'documents': 104})
+            example_profiles.append({'name': 'Fbi', 'contents': 66, 'documents': 1023})
+            example_profiles.append({'name': 'NSF', 'contents': 263, 'documents': 140})
+            example_profiles.append({'name': 'Swiss', 'contents': 4, 'documents': 502})
+            data['profiles'] = example_profiles
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class CreateNewProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            deleteAllUserFiles(user_id)
+            self.write(json.dumps({}))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class LoadExampleProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # reset everything
+            deleteAllUserFiles(user_id)
+            # load example data
+            loadExampleDocs(user_id)
+            data = loadExampleProfile(user_id)
+            self.set_secure_cookie('madgikmining_grantsuploaded', str(data['grants']))
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class UploadProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # get file info and body from post data
+            fileinfo = self.request.files['upload'][0]
+            fname = fileinfo['filename']
+            extn = os.path.splitext(fname)[1]
+            # must be .pdf or .json
+            if extn != ".oamp":
+                self.write(json.dumps({'respond': "<b style=\"color: red\">File must be .oamp compatible profile</b>"}))
+                return
+            # write data to physical file
+            cname = "/tmp/profile{0}.oamp".format(user_id)
+            fh = open(cname, 'w')
+            fh.write(fileinfo['body'])
+            fh.close()
+            data = loadProfile(cname, user_id)
+            self.set_secure_cookie('madgikmining_grantsuploaded', str(data['grants']))
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class AlreadyConceptsHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            data = {}
+            data['data'] = {}
+            file_name = "/tmp/p%s.tsv" % (user_id)
+            if os.path.isfile(file_name):
+                codes = {}
+                num_lines = 0
+                for line in open(file_name):
+                    columns = re.split(r'\t+', line.rstrip('\t\n\r'))
+                    if len(columns) and columns[0] == '':
+                        continue
+                    elif len(columns) > 1:
+                        codes[columns[0]] = columns[1]
+                    elif len(columns) == 1:
+                        codes[columns[0]] = ''
+                    num_lines += 1
+                cookie = self.get_secure_cookie('madgikmining_grantsuploaded')
+                if cookie and str(num_lines) == cookie:
+                    data['data'] = codes
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class UploadContentFileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # get file info and body from post data
+            fileinfo = self.request.files['upload'][0]
+            fname = fileinfo['filename']
+            extn = os.path.splitext(fname)[1]
+            # must be .pdf or .json
+            if extn != ".tsv" and extn != ".txt":
+                self.set_status(400)
+                self.write("File must be .tsv or .txt...")
+                return
+            codes = {}
+            lines = fileinfo['body'].splitlines()
+            for line in lines:
+                columns = re.split(r'\t+', line.rstrip('\t\n\r'))
+                if len(columns) and columns[0] == '':
+                    continue
+                elif len(columns) > 1:
+                    codes[columns[0]] = columns[1]
+                elif len(columns) == 1:
+                    codes[columns[0]] = ''
+            # data to be sent
+            data = {}
+            if len(lines) == 1:
+                data['error'] = "File <b>{0}</b> uploaded.<br><b>1 Code</b> loaded! <i>Please make sure that you separate each code with newline!</i>".format(fname)
+            else:
+                data['data'] = codes
+                data['respond'] = "<b>{0} Codes</b> loaded successfully!".format(len(lines))
+                self.set_secure_cookie('madgikmining_grantsuploaded', str(len(lines)))
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class UpdateConceptsHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # get data
+            concepts = json.loads(json.loads(self.request.body)['concepts'])
+            # write data to physical file
+            cname = "/tmp/p{0}.tsv".format(user_id)
+            fh = open(cname, 'w')
+            concepts_len = 0
+            for key, value in concepts.iteritems():
+                if key == '':
+                    continue
+                concepts_len += 1
+                fh.write("{0}\t{1}\n".format(key,value))
+            fh.close()
+            # data to be sent
+            data = {}
+            if concepts_len == 0:
+                self.set_status(400)
+                self.write("You have to provide at least one concept to continue!")
+                return
+            else:
+                data['respond'] = "<b>{0} Codes</b> loaded successfully!".format(concepts_len)
+                self.set_secure_cookie('madgikmining_grantsuploaded', str(concepts_len))
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class GetDocSamplesHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            data = {}
+            doc_samples = []
+            doc_samples.append({'name': 'Egi', 'documents': 104})
+            doc_samples.append({'name': 'Fbi', 'documents': 1023})
+            doc_samples.append({'name': 'NSF', 'documents': 140})
+            doc_samples.append({'name': 'Swiss', 'documents': 502})
+            doc_samples.append({'name': 'Egi', 'documents': 104})
+            doc_samples.append({'name': 'Fbi', 'documents': 1023})
+            doc_samples.append({'name': 'NSF', 'documents': 140})
+            doc_samples.append({'name': 'Swiss', 'documents': 502})
+            doc_samples.append({'name': 'Egi', 'documents': 104})
+            doc_samples.append({'name': 'Fbi', 'documents': 1023})
+            doc_samples.append({'name': 'NSF', 'documents': 140})
+            doc_samples.append({'name': 'Swiss', 'documents': 502})
+            doc_samples.append({'name': 'Egi', 'documents': 104})
+            doc_samples.append({'name': 'Fbi', 'documents': 1023})
+            doc_samples.append({'name': 'NSF', 'documents': 140})
+            doc_samples.append({'name': 'Swiss', 'documents': 502})
+            data['documents'] = doc_samples
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class UploadDocumentsHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            fileinfo = self.request.files['upload'][0]
+            fname = fileinfo['filename']
+            extn = os.path.splitext(fname)[1]
+            # data to be sent
+            data = {}
+            # must be .pdf, .txt or .json
+            if extn != ".pdf" and extn != ".txt" and extn != ".json":
+                self.set_status(400)
+                self.write("File must be .pdf, .json or .txt")
+                return
+                return
+            # write data to physical file
+            cname = "/tmp/docs{0}{1}".format(user_id, extn)
+            fh = open(cname, 'w')
+            fh.write(fileinfo['body'])
+            fh.close()
+            # Convert pdf to txt and then to json format
+            if extn == ".pdf":
+                import subprocess as sub
+                p = sub.Popen(['pdftotext', '-enc', 'UTF-8', cname],stdout=sub.PIPE,stderr=sub.PIPE)
+                output, errors = p.communicate()
+                if errors:
+                    self.set_status(400)
+                    self.write("An error occurred when trying to convert .pdf to .txt...")
+                    return
+                os.remove(cname)
+                cname = "/tmp/docs{0}.txt".format(user_id)
+                with open(cname, 'r') as fin:
+                    docData=fin.read().replace('\n', ' ')
+                    if len(docData)==0:
+                        self.set_status(400)
+                        self.write("An error occurred when trying to convert .pdf to text...")
+                        return
+                with open("/tmp/docs{0}.json".format(user_id), "wb") as fout:
+                    json.dump({"text":docData,"id":os.path.splitext(fname)[0]}, fout)
+                os.remove(cname)
+            # else check if txt is in correct json format
+            elif extn == ".txt" or extn == ".json":
+                try:
+                    jsonlist = []
+                    for line in open(cname, 'r'):
+                        jsonlist.append(json.loads(line))
+                    os.rename(cname, "/tmp/docs{0}.json".format(user_id))
+                except ValueError, e:
+                    self.set_status(400)
+                    self.write("File is not in a valid json format...")
+                    os.remove(cname)
+                    print e
+                    return
+            file_name = "/tmp/docs%s.json" % (user_id)
+            if os.path.isfile(file_name):
+                lines = sum(1 for line in open(file_name))
+                data['respond'] = "<b>{0} Documents</b> loaded successfully!".format(lines)
+                data['data'] = lines
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class ChooseDocSampleHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            doc_sample = json.loads(self.request.body)['docsample']
+            if doc_sample == '':
+                self.set_status(400)
+                self.write("A doc sample name must be provided")
+                return
+            sample_file_name = ""
+            if doc_sample == "Egi":
+                sample_file_name = "static/egi_sample.tsv"
+            elif doc_sample == "Rcuk":
+                sample_file_name = "static/rcuk_sample.tsv"
+            elif doc_sample == "Arxiv":
+                sample_file_name = "static/arxiv_sample.tsv"
+            else:
+                self.set_status(400)
+                self.write("No Doc sample with this name")
+                return
+            sample_file = open(sample_file_name, 'r')
+            # write data to physical file
+            cname = "/tmp/docs{0}.json".format(user_id)
+            fh = open(cname, 'w')
+            while 1:
+                copy_buffer = sample_file.read(1048576)
+                if not copy_buffer:
+                    break
+                fh.write(copy_buffer)
+            fh.close()
+            lines_num = sum(1 for line in open(cname))
+            
+            # data to be sent
+            data = {}
+            if lines_num == 0:
+                self.set_status(400)
+                self.write("File must contain atleast one document...")
+                return
+            else:
+                data['respond'] = "<b>{0} Documents</b> loaded successfully!".format(lines_num)
+                data['data'] = lines_num
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class AlreadyDocumentsHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'GET, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def get(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            data = {}
+            if msettings.RESET_FIELDS == 1:
+                data['data'] = -1
+            else:
+                data['data'] = 0
+            file_name = "/tmp/docs%s.json" % (user_id)
+            if os.path.isfile(file_name):
+                data['data'] = sum(1 for line in open(file_name))
+            msettings.RESET_FIELDS = 0
+            self.write(json.dumps(data))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class RunMiningHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            request_arguments = json.loads(self.request.body)
+            # get the database cursor
+            cursor=msettings.Connection.cursor()
+            # data to be sent
+            data = {}
+            # set the textwindow size
+            extracontextprev = 10
+            extracontextnext = 10
+            contextprev = 10
+            contextnext = 5
+            # Automatically find middle size from grant codes white spaces
+            querygrantsize = "select max(p1) from (select regexpcountwords('\s',stripchars(p1)) as p1 from (setschema 'p1,p2' file '/tmp/p{0}.tsv' dialect:tsv))".format(user_id)
+            contextmiddle = [r for r in cursor.execute(querygrantsize)][0][0]+1
+            if 'contextprev' in request_arguments and request_arguments['contextprev'] != '':
+                contextprev = int(request_arguments['contextprev'])
+                if contextprev < 0 or contextprev > 20:
+                    self.set_status(400)
+                    self.write("Context size must be in its limits...")
+                    return
+            if 'contextnext' in request_arguments and request_arguments['contextnext'] != '':
+                contextnext = int(request_arguments['contextnext'])
+                if contextnext < 0 or contextnext > 20:
+                    self.set_status(400)
+                    self.write("Context size must be in its limits...")
+                    return
+            j2sextraprev = "j2s(prev1"
+            for cnt in xrange(2,extracontextprev+1):
+                j2sextraprev += ",prev"+str(cnt)
+            j2sextraprev += ")"
+            j2sprev = ""
+            j2scontext = "("
+            if contextprev:
+                j2scontext = "j2s(prev"+str(extracontextprev+1)
+                j2sprev = "j2s(prev"+str(extracontextprev+1)
+                for cnt in xrange(extracontextprev+2,extracontextprev+contextprev+1):
+                    j2sprev += ",prev"+str(cnt)
+                    j2scontext += ",prev"+str(cnt)
+                j2sprev += ")"
+                j2scontext += ","
+            else:
+                j2scontext = "j2s("
+            j2snext = "j2s(next1"
+            j2scontext += "middle"
+            if contextnext:
+                j2scontext += ",next1"
+                for cnt in xrange(2,contextnext+1):
+                    j2snext += ",next"+str(cnt)
+                    j2scontext += ",next"+str(cnt)
+                j2snext += ")"
+            j2scontext += ")"
+            j2sextranext = "j2s(next"+str(contextnext+1)
+            for cnt in xrange(contextnext+2,extracontextnext+contextnext+1):
+                j2sextranext += ",next"+str(cnt)
+            j2sextranext += ")"
+            print j2sextraprev, j2sprev, j2snext, j2sextranext, j2scontext
+
+            # create positive and negative words weighted regex text
+            pos_set = neg_set = conf = whr_conf = ''
+            if 'poswords' in request_arguments and request_arguments['poswords'] != '{}':
+                data['poswords'] = []
+                # construct math string for positive words matching calculation with weights
+                pos_words = json.loads(request_arguments['poswords'])
+                for key, value in pos_words.iteritems():
+                    # MONO GIA TO EGI
+                    pos_set += r'regexpcountuniquematches("%s",%s)*%s + ' % (key,j2scontext,value)
+                    # ORIGINAL
+                    # pos_set += r'regexpcountuniquematches("(?:\b)%s(?:\b)",j2s(prev,middle,next))*%s + ' % (key,value)
+                    data['poswords'].append(key)
+                pos_set += "0"
+            if 'negwords' in request_arguments and request_arguments['negwords'] != '{}':
+                data['negwords'] = []
+                # construct math string for negative words matching calculation with weights
+                neg_words = json.loads(request_arguments['negwords'])
+                for key, value in neg_words.iteritems():
+                    # MONO GIA TO EGI
+                    neg_set += r'regexpcountuniquematches("%s",%s)*%s + ' % (key,j2scontext,value)
+                    # ORIGINAL
+                    # neg_set += r'regexpcountuniquematches("(?:\b)%s(?:\b)",j2s(prev,middle,next))*%s - ' % (key,value)
+                    data['negwords'].append(key)
+                neg_set += "0"
+            if pos_set != '' and neg_set != '':
+                conf = ", ({0} - {1})".format(pos_set, neg_set)
+            elif pos_set != '':
+                conf = ", {0}".format(pos_set)
+            elif neg_set != '':
+                conf = ", -{0}".format(neg_set)
+            if conf != '':
+                conf += ' as conf'
+                whr_conf = 'and conf>=0'
+
+            if numberOfDocsUploaded(user_id) != 0:
+                doc_filters = "comprspaces(regexpr('[\n|\r]',d2,' '))"
+                ackn_filters = "comprspaces(regexpr(\"\\'\", p2,''))"
+                if 'punctuation' in request_arguments and request_arguments['punctuation'] == "1":
+                    doc_filters = 'keywords('+doc_filters+')'
+                    ackn_filters = 'keywords('+ackn_filters+')'
+                if 'lettercase' in request_arguments and request_arguments['lettercase'] != '' and request_arguments['lettercase'] != 'none':
+                    if request_arguments['lettercase'] == 'lowercase':
+                        doc_filters = 'lower('+doc_filters+')'
+                        ackn_filters = 'lower('+ackn_filters+')'
+                    elif request_arguments['lettercase'] == 'uppercase':
+                        doc_filters = 'upper('+doc_filters+')'
+                        ackn_filters = 'upper('+ackn_filters+')'
+                if 'stopwords' in request_arguments and request_arguments['stopwords'] == "1":
+                    doc_filters = 'filterstopwords('+doc_filters+')'
+                    ackn_filters = 'filterstopwords('+ackn_filters+')'
+                print "DOCCC", doc_filters
+                list(cursor.execute("drop table if exists grantstemp"+user_id, parse=False))
+                query_pre_grants = "create temp table grantstemp{0} as select stripchars(p1) as gt1, case when p2 is null then null else {1} end as gt2 from (setschema 'p1,p2' file '/tmp/p{0}.tsv' dialect:tsv)".format(user_id, ackn_filters)
+                cursor.execute(query_pre_grants)
+                list(cursor.execute("drop table if exists docs"+user_id, parse=False))
+                query1 = "create temp table docs{0} as select d1, {1} as d2 from (setschema 'd1,d2' select jsonpath(c1, '$.id', '$.text') from (file '/tmp/docs{0}.json'))".format(user_id, doc_filters)
+                cursor.execute(query1)
+            else:
+                self.set_status(400)
+                self.write("You have to provide atleast 1 document...")
+                return
+
+            list(cursor.execute("drop table if exists grants"+user_id, parse=False))
+            # string concatenation workaround because of the special characters conflicts
+            if 'wordssplitnum' in request_arguments and request_arguments['wordssplitnum'] != '':
+                words_split = int(request_arguments['wordssplitnum'])
+                # MONO GIA TO EGI
+                if 0 < words_split and words_split <= 10:
+                    acknowledgment_split = r'textwindow2s(gt2,0,'+str(words_split)+r',0)'
+                else:
+                    acknowledgment_split = r'"dummy" as prev, gt2 as middle, "dummy" as next'
+                # ORIGINAL
+                # if 0 < words_split and words_split <= 10:
+                #     acknowledgment_split = r'textwindow2s(regexpr("([\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|])", gt2, "\\\1"),0,'+str(words_split)+r',0)'
+                # else:
+                #     acknowledgment_split = r'"dummy" as prev, regexpr("([\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|])", gt2, "\\\1") as middle, "dummy" as next'
+
+                # query0 = r"create temp table grants"+user_id+r' as select gt1 as g1, jmergeregexp(jgroup("(?<=[\s\b])"||middle||"(?=[\s\b])")) as g2 from '+r"(setschema 'gt1,prev,middle,next' select gt1, "+acknowledgment_split+r' from grantstemp'+user_id+r' where (gt1 or gt1!="") and gt2 not null) group by gt1 union all select distinct gt1 as g1, "(?!.*)" as g2 from grantstemp'+user_id+r" where (gt1 or gt1!='') and gt2 is null"
+                query0 = r"create temp table grants"+user_id+r' as select gt1 as g1, jmergeregexp(jgroup(middle)) as g2 from '+r"(setschema 'gt1,prev,middle,next' select gt1, "+acknowledgment_split+r' from grantstemp'+user_id+r' where (gt1 or gt1!="") and gt2 != "") group by gt1 union all select distinct gt1 as g1, "(?!.*)" as g2 from grantstemp'+user_id+r" where (gt1 or gt1!='') and gt2 = ''"
+                cursor.execute(query0)
+                query0get = "select * from grants{0}".format(user_id)
+                results0get = [r for r in cursor.execute(query0get)]
+                print results0get
+
+            # FOR EGI ONLY
+            query2 = r'select distinct d1, g1, extraprev, prev, middle, next, extranext, acknmatch, max(confidence) as confidence from (select d1, g1, regexpcountuniquematches(g2, '+j2scontext+r') as confidence, stripchars('+j2sextraprev+r') as extraprev, stripchars('+j2sprev+r') as prev, middle, stripchars('+j2snext+r') as next, stripchars('+j2sextranext+r') as extranext, '+j2scontext+r' as context, regexprfindall(g2, '+j2scontext+r') as acknmatch '+conf+r' from (select d1, textwindow(d2,'+str(extracontextprev+contextprev)+r','+str(extracontextnext+contextnext)+r','+str(contextmiddle)+r') from docs'+user_id+r'), (select g1, g2 from grants'+user_id+r') T where regexprmatches("(\b|\d|\W)"||T.g1||"(\b|\d|\W)",middle) '+whr_conf+r') group by d1'
+            # ORIGINAL
+            # query2 = "select d1, g1, context, acknmatch, max(confidence) as confidence from (select d1, g1, regexpcountuniquematches(g2, j2s(prev,middle,next)) as confidence, j2s(prev,middle,next) as context, regexprfindall(g2, j2s(prev,middle,next)) as acknmatch {0} from (select d1, textwindow2s(d2,20,{3},20) from docs{1}), (select g1, g2 from grants{1}) T where regexprmatches(T.g1,middle) {2}) group by d1".format(conf, user_id, whr_conf, contextmiddle)
+
+            # OLD ONE
+            # query2 = "select c1, c3 {0} from (select c1, textwindow2s(c2,10,1,5) from (select * from docs{1})), (select c3 from grants{1}) T where middle = T.c3 {2}".format(conf, user_id, whr_conf)
+            results = [r for r in cursor.execute(query2)]
+            print results
+            doctitles = {}
+            for r in results:
+                if r[0] not in doctitles:
+                    doctitles[r[0]] = []
+                doctitles[r[0]].append({"match": r[1], "extraprev": r[2], "prev": r[3], "middle": r[4], "next":r[5],  "extranext":r[6], "acknmatch": json.loads(r[7]), "confidence": r[8]})
+            data['matches'] = doctitles
+            data['respond'] = "Matching results updated!"
+            self.write(json.dumps(data))
+            self.flush()
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class PrepareSavedProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            import sys
+            sys.path.append(msettings.MADIS_PATH)
+            import madis
+            # get the database cursor
+            # profile file name
+            profile_file_name = "/tmp/OAMiningProfile_{0}.oamp".format(user_id)
+            cursor=madis.functions.Connection(profile_file_name).cursor()
+            # Create poswords table
+            cursor.execute("drop table if exists poswords", parse=False)
+            cursor.execute("create table poswords(c1,c2)", parse=False)
+            # Create negwords table
+            cursor.execute("drop table if exists negwords", parse=False)
+            cursor.execute("create table negwords(c1,c2)", parse=False)
+            # Create filters table
+            cursor.execute("drop table if exists filters", parse=False)
+            cursor.execute("create table filters(c1,c2)", parse=False)
+            # Create grants table
+            cursor.execute("drop table if exists grants", parse=False)
+            cursor.execute("create table grants(c1,c2)", parse=False)
+            request_arguments = json.loads(self.request.body)
+            if 'poswords' in request_arguments and request_arguments['poswords'] != '{}':
+                # construct math string for positive words matching calculation with weights
+                pos_words = json.loads(request_arguments['poswords'])
+                cursor.executemany("insert into poswords(c1,c2) values(?,?)",
+                          (
+                                (key, value,) for key, value in pos_words.iteritems()
+                          )
+                )
+            if 'negwords' in request_arguments and request_arguments['negwords'] != '{}':
+                # construct math string for negative words matching calculation with weights
+                neg_words = json.loads(request_arguments['negwords'])
+                cursor.executemany("insert into negwords(c1,c2) values(?,?)",
+                          (
+                                (key, value,) for key, value in neg_words.iteritems()
+                          )
+                )
+            if 'filters' in request_arguments and request_arguments['filters'] != '{}':
+                # construct math string for negative words matching calculation with weights
+                filters = json.loads(request_arguments['filters'])
+                cursor.executemany("insert into filters(c1,c2) values(?,?)",
+                          (
+                                (key, value,) for key, value in filters.iteritems()
+                          )
+                )
+            if numberOfGrantsUploaded(user_id, self.get_secure_cookie('madgikmining_grantsuploaded')) != 0:
+                  cursor.execute("insert into grants select stripchars(c1) as c1, stripchars(c2) as c2 from (file '/tmp/p{0}.tsv')".format(user_id))
+            cursor.close()
+
+            data = {}
+            data['data'] = 1
+            self.write(json.dumps(data))
+            self.flush()
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class SaveProfileToDatabaseHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/json')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            # get data
+            profile_id = json.loads(self.request.body)['id']
+            profile_name = json.loads(self.request.body)['name']
+            doc_name = json.loads(self.request.body)['docname']
+            docs_number = json.loads(self.request.body)['docsnumber']
+            # copy profile file to a unique user profile file
+            profile_file_name = "/tmp/OAMiningProfile_{0}.oamp".format(user_id)
+            # check if profile has already an id
+            old_profile = True
+            if profile_id == '':
+                # get unique profile id
+                profile_id = getNewProfileId()
+                old_profile = False
+            unique_profile_file_name = "/tmp/OAMiningProfile_{0}_{1}.oamp".format(user_id,profile_id)
+            copyfile(profile_file_name, unique_profile_file_name)
+            # copy profile docs to unique profile docs
+            if doc_name != '' and docs_number != 0:
+                docs_file_name = "/tmp/docs{0}.json".format(user_id)
+                unique_docs_file_name = "/tmp/OAMiningDocs_{0}_{1}.json".format(user_id,profile_id)
+                copyfile(docs_file_name, unique_docs_file_name)
+            # write new profile to database
+            import sys
+            sys.path.append(msettings.MADIS_PATH)
+            import madis
+            # database file name
+            database_file_name = "/tmp/OAMiningProfilesDatabase_{0}.db".format(user_id)
+            # get the database cursor
+            cursor=madis.functions.Connection(database_file_name).cursor()
+            user_profiles = []
+            if old_profile:
+                query = 'UPDATE database set name="{1}", datecreated="{2}", status="{3}", matches="{4}", docname="{5}", docsnumber="{6}" where id="{0}"'.format(profile_id,profile_name,"24-03-2018","Ready","8/8",doc_name,docs_number)
+            else:
+                query = 'INSERT INTO database VALUES("{0}","{1}","{2}","{3}","{4}","{5}","{6}")'.format(profile_id,profile_name,"24-03-2018","Ready","8/8",doc_name,docs_number)
+            cursor.execute(query, parse=False)
+            cursor.close()
+            self.write(json.dumps({}))
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class DownloadProfileHandler(BaseHandler):
+    passwordless=True
+    def set_default_headers(self):
+        self.set_header("Access-Control-Allow-Origin", "http://localhost:4200")
+        self.set_header("Access-Control-Allow-Headers", "Origin, X-Requested-With, Content-Type, Accept")
+        self.set_header('Access-Control-Allow-Methods', 'POST, OPTIONS')
+        self.set_header('Access-Control-Allow-Credentials', 'true')
+        self.set_header('Content-Type', 'application/oamp')
+    def options(self):
+        # no body
+        self.set_status(204)
+        self.finish()
+    def post(self):
+        try:
+            # get user id from cookie. Must have
+            user_id = self.get_secure_cookie('madgikmining')
+            if user_id is None:
+                self.set_status(400)
+                self.write("Missing cookie containing user's id...")
+                return
+            profile_id = json.loads(self.request.body)['id']
+            unique_profile_file_name = "/tmp/OAMiningProfile_{0}_{1}.oamp".format(user_id,profile_id)
+            buf_size = 4096
+            self.set_header('Content-Type', 'application/octet-stream')
+            self.set_header('Content-Disposition', 'attachment; filename=' + "OAMiningProfile_{0}_{1}.oamp".format(user_id,profile_id))
+            self.flush()
+            with open(unique_profile_file_name, 'r') as f:
+                while True:
+                    data = f.read(buf_size)
+                    if not data:
+                        break
+                    self.write(data)
+            self.finish()
+        except Exception as ints:
+            self.set_status(400)
+            self.write("A server error occurred, please contact administrator!")
+            self.finish()
+            print ints
+            return
+
+
+class madAppHandler(BaseHandler):
+    def get(self):
+        try:
+            appname=re.match(r'.+/([^/]+)/?$', self.request.uri).groups()[0].lower()
+        except AttributeError:
+            raise tornado.web.HTTPError(404)
+
+        appobj=None
+        for ap in madapps.apps:
+            if ap['link']==appname:
+                appobj=ap
+                break
+
+        if appobj==None:
+            raise tornado.web.HTTPError(404)
+
+        self.render('madappview.html', app=appobj, apps=filteredapps, evals=filteredevals, settings=msettings)
+
+class madAppDataHandler(BaseHandler):
+
+    @tornado.web.asynchronous
+    def post(self):
+        try:
+            appname, queryname=[x.lower() for x in re.match(r'.+/([^/]+)/(.+)$', self.request.uri).groups()]
+        except AttributeError:
+            raise tornado.web.HTTPError(404)
+
+        appobj=None
+        query=''
+        for ap in madapps.apps:
+            if ap['link']==appname:
+                if queryname in ap:
+                    appobj=ap
+                    if queryname=='query':
+                        query=appobj['query']
+                    else:
+                        query=appobj[queryname]['query']
+                break
+
+        if appobj==None:
+            raise tornado.web.HTTPError(404)
+
+        params=dict(((x.replace(' ','_'),y[0].replace('\n','')) for x,y in self.request.arguments.iteritems()) )
+        self.executequery(query, params)
+
+
+
+
+def main():
+    global filteredapps, filteredevals
+
+    def getqtext(query,params):
+        query=query.strip('\n \s')
+        query=escape.xhtml_escape(query)
+        for i in params:
+            i=i.replace(' ','_')
+            query=re.sub(':'+i, '<b><i>'+escape.xhtml_escape(i)+'</i></b>', query)
+            query=re.sub('$'+i, '<b><i>'+escape.xhtml_escape(i)+'</i></b>', query)
+            query=re.sub('@'+i, '<b><i>'+escape.xhtml_escape(i)+'</i></b>', query)
+        return query.replace("\n","<br/>")
+
+    if 'initial_queries' in queries:
+        try:
+            list(msettings.Connection.cursor().execute(queries['initial_queries']))
+        except Exception, e:
+            raise Exception("Error when executing DB_INITIAL_EXECUTE:\n"+queries['initial_queries']+"\nThe error was:\n"+ str(e))
+    
+    tornado.options.parse_command_line()
+    
+    logging.info('Completed madApp startup scripts')
+
+    filteredapps=filter(lambda x:("eval" not in x),madapps.apps)
+    filteredevals=filter(lambda x:("eval" in x),madapps.apps)
+
+    if not msettings.DEBUG:
+        sockets = tornado.netutil.bind_sockets(options.port)
+        tornado.process.fork_processes(0) 
+        server = tornado.httpserver.HTTPServer(Application())
+        #        ssl_options = {
+        #"certfile": os.path.join("/home/openaire/ssl/certificate.crt"),
+        #"keyfile": os.path.join("/home/openaire/ssl/privateKey.key"),
+#})
+        server.add_sockets(sockets)
+        tornado.ioloop.IOLoop.instance().start()
+    else:
+#       debug case 
+        http_server = tornado.httpserver.HTTPServer(Application())
+        http_server.bind(options.port)
+        http_server.start(1)
+        tornado.ioloop.IOLoop.instance().start()
+
+
+
+if __name__ == "__main__":
+    main()
diff --git a/interactive-mining-madoap/madoap/src/settings.py b/interactive-mining-backend/madoap/src/settings.py
similarity index 100%
rename from interactive-mining-madoap/madoap/src/settings.py
rename to interactive-mining-backend/madoap/src/settings.py
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index e57f5fef953582141ade8727556fee8208d9ef69..a2c0b588c120eef51cf1dad74b7872c568a10a1b 100644
GIT binary patch
delta 17
YcmZqBXwaA-%_uZc#+gxQW5NPq04sR})&Kwi

delta 17
YcmZqBXwaA-%_ulg#+gxYW5NPq04r())Bpeg

diff --git a/interactive-mining-madoap/madoap/src/static/favicon.ico b/interactive-mining-backend/madoap/src/static/favicon.ico
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rename from interactive-mining-madoap/madoap/src/tornado/epoll.c
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diff --git a/interactive-mining-madoap/madoap/src/tornado/escape.py b/interactive-mining-backend/madoap/src/tornado/escape.py
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rename from interactive-mining-madoap/madoap/src/tornado/escape.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/gen.py b/interactive-mining-backend/madoap/src/tornado/gen.py
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rename from interactive-mining-madoap/madoap/src/tornado/gen.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/httpclient.py b/interactive-mining-backend/madoap/src/tornado/httpclient.py
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rename from interactive-mining-madoap/madoap/src/tornado/httpclient.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/httpserver.py b/interactive-mining-backend/madoap/src/tornado/httpserver.py
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rename from interactive-mining-madoap/madoap/src/tornado/httpserver.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/httputil.py b/interactive-mining-backend/madoap/src/tornado/httputil.py
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rename from interactive-mining-madoap/madoap/src/tornado/httputil.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/ioloop.py b/interactive-mining-backend/madoap/src/tornado/ioloop.py
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rename from interactive-mining-madoap/madoap/src/tornado/ioloop.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/iostream.py b/interactive-mining-backend/madoap/src/tornado/iostream.py
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rename from interactive-mining-madoap/madoap/src/tornado/iostream.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/locale.py b/interactive-mining-backend/madoap/src/tornado/locale.py
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rename from interactive-mining-madoap/madoap/src/tornado/locale.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/netutil.py b/interactive-mining-backend/madoap/src/tornado/netutil.py
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rename from interactive-mining-madoap/madoap/src/tornado/netutil.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/options.py b/interactive-mining-backend/madoap/src/tornado/options.py
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rename from interactive-mining-madoap/madoap/src/tornado/options.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/platform/__init__.py b/interactive-mining-backend/madoap/src/tornado/platform/__init__.py
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rename from interactive-mining-madoap/madoap/src/tornado/platform/__init__.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/platform/auto.py b/interactive-mining-backend/madoap/src/tornado/platform/auto.py
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rename from interactive-mining-madoap/madoap/src/tornado/platform/auto.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/platform/interface.py b/interactive-mining-backend/madoap/src/tornado/platform/interface.py
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rename from interactive-mining-madoap/madoap/src/tornado/platform/interface.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/platform/posix.py b/interactive-mining-backend/madoap/src/tornado/platform/posix.py
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rename from interactive-mining-madoap/madoap/src/tornado/platform/posix.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/platform/twisted.py b/interactive-mining-backend/madoap/src/tornado/platform/twisted.py
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rename from interactive-mining-madoap/madoap/src/tornado/platform/twisted.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/platform/windows.py b/interactive-mining-backend/madoap/src/tornado/platform/windows.py
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rename from interactive-mining-madoap/madoap/src/tornado/platform/windows.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/process.py b/interactive-mining-backend/madoap/src/tornado/process.py
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rename from interactive-mining-madoap/madoap/src/tornado/process.py
rename to interactive-mining-backend/madoap/src/tornado/process.py
diff --git a/interactive-mining-madoap/madoap/src/tornado/simple_httpclient.py b/interactive-mining-backend/madoap/src/tornado/simple_httpclient.py
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rename from interactive-mining-madoap/madoap/src/tornado/simple_httpclient.py
rename to interactive-mining-backend/madoap/src/tornado/simple_httpclient.py
diff --git a/interactive-mining-madoap/madoap/src/tornado/stack_context.py b/interactive-mining-backend/madoap/src/tornado/stack_context.py
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rename from interactive-mining-madoap/madoap/src/tornado/stack_context.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/template.py b/interactive-mining-backend/madoap/src/tornado/template.py
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rename from interactive-mining-madoap/madoap/src/tornado/template.py
rename to interactive-mining-backend/madoap/src/tornado/template.py
diff --git a/interactive-mining-madoap/madoap/src/tornado/testing.py b/interactive-mining-backend/madoap/src/tornado/testing.py
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rename from interactive-mining-madoap/madoap/src/tornado/testing.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/util.py b/interactive-mining-backend/madoap/src/tornado/util.py
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rename from interactive-mining-madoap/madoap/src/tornado/util.py
rename to interactive-mining-backend/madoap/src/tornado/util.py
diff --git a/interactive-mining-madoap/madoap/src/tornado/web.py b/interactive-mining-backend/madoap/src/tornado/web.py
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rename from interactive-mining-madoap/madoap/src/tornado/web.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/websocket.py b/interactive-mining-backend/madoap/src/tornado/websocket.py
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rename from interactive-mining-madoap/madoap/src/tornado/websocket.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado/wsgi.py b/interactive-mining-backend/madoap/src/tornado/wsgi.py
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rename from interactive-mining-madoap/madoap/src/tornado/wsgi.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado_addons/__init__.py b/interactive-mining-backend/madoap/src/tornado_addons/__init__.py
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rename from interactive-mining-madoap/madoap/src/tornado_addons/__init__.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado_addons/error.py b/interactive-mining-backend/madoap/src/tornado_addons/error.py
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rename from interactive-mining-madoap/madoap/src/tornado_addons/error.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado_addons/ozhandler.py b/interactive-mining-backend/madoap/src/tornado_addons/ozhandler.py
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rename from interactive-mining-madoap/madoap/src/tornado_addons/ozhandler.py
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diff --git a/interactive-mining-madoap/madoap/src/tornado_addons/route.py b/interactive-mining-backend/madoap/src/tornado_addons/route.py
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rename from interactive-mining-madoap/madoap/src/tornado_addons/route.py
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