ShareLatex docker image that builds on top of the sharelatex official one.
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3.4 KiB

FROM sharelatex/sharelatex:latest
# MAINTAINER Andrea Dell'Amico <andrea.dellamico@isti.cnr.it>
RUN apt-get update && apt-get dist-upgrade -y
RUN apt-get update && apt-get install -y \
subversion \
git \
texlive texlive-full \
gdal-bin \
libgdal-dev \
libgeos-dev \
libspatialite-dev \
proj-bin \
proj-data \
libproj-dev \
libcurl4-openssl-dev \
libnetcdf-dev \
netcdf-bin \
mono-runtime \
libmono-microsoft-visualbasic10.0-cil \
'libmono-2.0-1' \
'libmono-corlib2.0-cil' \
gsl-bin \
libgsl0-dev \
mesa-common-dev \
libglu1-mesa-dev \
postgis \
postgresql-client
RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
COPY cran_rstudio_com_bin_linux_ubuntu.list /etc/apt/sources.list.d/cran_rstudio_com_bin_linux_ubuntu.list
RUN apt-get update && apt-get install -y \
r-recommended \
r-base \
r-base-dev \
r-base-html \
r-base-core \
r-doc-html \
r-cran-boot \
r-cran-cluster \
r-cran-foreign \
r-cran-kernsmooth \
r-cran-lattice \
r-cran-mgcv \
r-cran-nlme \
r-cran-rpart \
r-cran-survival \
r-cran-mass \
r-cran-class \
r-cran-nnet \
r-cran-spatial \
r-cran-codetools \
r-cran-matrix \
jags
# Install some R packages that are required by the custom Rprofile.site
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='jsonlite', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='googleVis', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='httr', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='XML', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='DBI', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='RPostgreSQL', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='knitr', repos=c('https://cran.mirror.garr.it/mirrors/CRAN/'));"
RUN cd srv ; wget https://github.com/jgm/pandoc/releases/download/2.2.2.1/pandoc-2.2.2.1-1-amd64.deb
RUN dpkg -i /srv/pandoc-2.2.2.1-1-amd64.deb
RUN apt-get update && apt-get install -y cron
# copy the LatexMk file needed by knitr
COPY LatexMk /etc/LatexMk
RUN mkdir -p /srv/d4science
RUN cd /srv/d4science ; svn checkout http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RStudioConfiguration
RUN rm -f /etc/R/Rprofile.site && ln -s /srv/d4science/RStudioConfiguration/.Rprofile /etc/R/Rprofile.site
RUN mkdir -p /srv/r_updater
RUN cd /srv/r_updater ; svn checkout http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RPackagesManagement
RUN mkdir -p /etc/cron.d
COPY install-r-packages.cron /etc/cron.d/install-r-packages
COPY upgrade-r-packages.cron /etc/cron.d/upgrade-r-packages
COPY update-rprofile.cron /etc/cron.d/update-rprofile
COPY update_r_packages /usr/local/bin/update_r_packages
RUN chmod 755 /usr/local/bin/update_r_packages
COPY settings.coffee /etc/sharelatex/settings.coffee
EXPOSE 80
WORKDIR /
ENTRYPOINT ["/sbin/my_init"]