First commit.

Dockerfile

@@ -0,0 +1,68 @@
+FROM sharelatex/sharelatex:latest
+
+MAINTAINER Andrea Dell'Amico <andrea.dellamico@isti.cnr.it>
+
+RUN apt-get update && apt-get dist-upgrade -y
+
+RUN apt-get update && apt-get install -y \
+    subversion \
+    git \
+    texlive texlive-full \
+    gdal-bin \
+    libgdal-dev \
+    libgeos-dev \
+    libspatialite-dev \
+    proj-bin \
+    proj-data \
+    libproj-dev \
+    libcurl4-openssl-dev \
+    libnetcdf-dev \
+    netcdf-bin \
+    mono-runtime \
+    libmono-microsoft-visualbasic10.0-cil \
+    'libmono-2.0-1' \
+    'libmono-corlib2.0-cil' \
+    gsl-bin \
+    libgsl0-dev \
+    mesa-common-dev \
+    libglu1-mesa-dev \
+    postgis \
+    postgresql-client
+
+RUN apt-get update && apt-get install -y \
+    r-recommended \
+    r-base \
+    r-base-dev \
+    r-base-html \
+    r-base-core \
+    r-doc-html \
+    r-cran-boot \
+    r-cran-cluster \
+    r-cran-foreign \
+    r-cran-kernsmooth \
+    r-cran-lattice \
+    r-cran-mgcv \
+    r-cran-nlme \
+    r-cran-rpart \
+    r-cran-survival \
+    r-cran-mass \
+    r-cran-class \
+    r-cran-nnet \
+    r-cran-spatial \
+    r-cran-codetools \
+    r-cran-matrix \
+    jags
+
+# copy the LatexMk file needed by knitr
+COPY LatexMk /etc/LatexMk
+
+RUN mkdir -p /srv/d4science
+
+RUN ln -s /srv/d4science/RStudioConfiguration/.Rprofile /etc/R/Rprofile.site
+
+EXPOSE 80
+
+WORKDIR /
+
+ENTRYPOINT ["/sbin/my_init"]
+

LatexMk

@@ -0,0 +1,20 @@
+my $root_file = $ARGV[-1];
+
+add_cus_dep( 'Rtex', 'tex', 0, 'rtex_to_tex');
+sub rtex_to_tex {
+    do_knitr("$_[0].Rtex");
+}
+
+sub do_knitr {
+    my $dirname = dirname $_[0];
+    my $basename = basename $_[0];
+    system("Rscript -e \"library('knitr'); setwd('$dirname'); knit('$basename')\"");
+}
+
+my $rtex_file = $root_file =~ s/\.tex$/.Rtex/r;
+unless (-e $root_file) {
+    if (-e $rtex_file) {
+        do_knitr($rtex_file);
+    }
+}
+

README.md

@@ -0,0 +1,12 @@
+## README file of the D4Science ShareLatex repository
+## Authors : Andrea Dell'Amico (ISTI-CNR)
+## Creation date : July 25th, 2018
+## ALst update : July 30th, 2018
+
+# I. Content :
+
+- Dockerfile				file used to build a docker image
+- Rprofile.site				file used to set R local options
+- README.md				current information text file 
+- map_functions.R			up-to-date R script containing the functions enabling the generation of a map using a CSV file and images
+