150 lines
4.7 KiB
YAML
150 lines
4.7 KiB
YAML
---
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#
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# There's an untrusted Ubuntu PPA repository with gobs of packages and dependencies: https://launchpad.net/~marutter/+archive/ubuntu/c2d4u
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#
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# To list the installed R packages
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# Run R, then execute
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# packinfo <- installed.packages (fields = c ("Package", "Version"))
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# packinfo[,c("Package", "Version")]
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#
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# The install/remove script has been taken from here: http://adamj.eu/tech/2014/07/19/installing-and-removing-r-packages-with-ansible/
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#
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# Set to True if you want install from the CRAN deb repository
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r_install_cran_repo: False
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# “Michael Rutter marutter@gmail.com” with key ID 0x51716619e084dab9
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# E298A3A825C0D65DFD57CBB651716619E084DAB9
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r_cran_repo_apt_key: 'E298A3A825C0D65DFD57CBB651716619E084DAB9'
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# Use 'cran35' for R 3.6
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r_cran_repo_version: 'cran40'
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r_cran_repo_url: 'https://cloud.r-project.org/bin/linux/ubuntu {{ ansible_distribution_release }}-{{ r_cran_repo_version }}/'
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# Use 'marutter/c2d4u3.5' for R 3.6
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r_cran_ubuntu_packages_ppa: 'ppa:marutter/c2d4u'
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r_cran_set_default_mirror: True
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r_cran_mirror_site: https://cran.mirror.garr.it/mirrors/CRAN/
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r_base_specific_version: False
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r_base_pkg_version: 4.0.3
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r_packages_main_state: present
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r_packages_state: '{{ r_packages_main_state }}'
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r_sitelib_path: '/usr/local/lib/R/site-library'
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r_plugins_from_deb: True
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r_packages_cleanup: False
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#
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r_packages_updater: True
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r_package_updater_via_subversion: True
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r_package_updater_subversion_repo: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RPackagesManagement/
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r_packages_svn_base_dir: /srv/r_updater
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r_packages_svn_files_prefix: ''
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r_packages_updater_also_upgrades_installed_packages: False
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# They need to be flat text files
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# 1 package per line
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#r_debian_packages_list_url
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#r_el_packages_list_url
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# package[:cran mirror]
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# The CRAN mirror URL is optional
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#r_cran_packages_list_url
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# The CRAN mirror URL is optional
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#r_cran_packages_list_url
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# user/package_name
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#r_github_packages_list_url
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r_source_plugins_dest_dir: /var/cache/R
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r_distribution_required_packages: []
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# - gdal-bin
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# - dans-gdal-scripts
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# - libgdal1-dev
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# - libgeos-dev
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# - libspatialite-dev
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# - proj
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# - proj-bin
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# - proj-data
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# - libproj-dev
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r_base_packages_list:
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- r-base
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# Some packages must be put on hold
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r_base_packages_hold_list: []
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r_plugins_packages_list:
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- jags
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- r-cran-rjags
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- r-cran-abind
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- r-cran-boot
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- r-cran-class
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- r-cran-cluster
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- r-cran-coda
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- r-cran-codetools
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- r-cran-foreign
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- r-cran-lattice
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- r-cran-maptools
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- r-cran-mass
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- r-cran-matrix
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- r-cran-mgcv
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- r-cran-nlme
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- r-cran-nnet
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- r-cran-rpart
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- r-cran-sp
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- r-cran-spatial
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- r-cran-survival
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r_apt_additional_repos:
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- 'ppa:opencpu/jq'
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# RHEL/CentOS:
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# http://springdale.princeton.edu/data/springdale/7/x86_64/os/Computational/
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#
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r_sitelib_el_path: '/usr/local/lib/R/library'
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r_el_dev_pkgs: True
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r_base_packages_el:
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- R
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- R-core
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- libRmath
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r_base_packages_dev_el:
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- R-core-devel
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- libRmath-devel
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r_base_packages_java_el:
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- R-java
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r_base_packages_java_dev_el:
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- R-java-devel
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r_distribution_required_el_packages: []
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r_cran_ubuntu_packages: []
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r_cran_install_from_sources: True
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r_plugins_list_to_install: []
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# - { name: 'R2WinBUGS', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'R2jags', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'bayesmix', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'coda', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'rjags', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'runjags', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'base', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'compiler', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'datasets', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'grDevices', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'graphics', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'grid', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'methods', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'parallel', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'reshape', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'splines', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'stats', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'stats4', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'tcltk', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'tools', repo: '{{ r_cran_mirror_site }}' }
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# - { name: 'utils', repo: '{{ r_cran_mirror_site }}' }
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r_plugins_from_sources: []
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# - { name: 'plyr', version: '1.7.1', source: 'plyr_1.7.1.tar.gz', url: 'http://cran.r-project.org/src/contrib/Archive/plyr/plyr_1.7.1.tar.gz' }
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r_plugins_from_github: []
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# - { plugin_name: 'RFigisGeo', github_user: 'openfigis' }
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# - { plugin_name: 'rsdmx', github_user: 'opensdmx' }
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#
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r_plugins_list_to_remove: []
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