109 lines
5.7 KiB
YAML
109 lines
5.7 KiB
YAML
---
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- block:
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- name: Install a Rprofile.site with the default CRAN mirror
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template:
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src: Rprofile.site.j2
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dest: /etc/R/Rprofile.site
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owner: root
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group: root
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mode: 0444
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when: r_install_rprofile_site
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tags: [ 'r_software', 'r_profile', 'r_profile_site', 'r_pkg' ]
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- name: Configure the JDK environment
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shell: export JAVA_HOME={{ jdk_java_home }} ; export J2SDKDIR={{ jdk_java_home }} ; export J2REDIR={{ jdk_java_home }}/jre ; R CMD javareconf ; touch /etc/R/.java{{ jdk_default }}.env_conf
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args:
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creates: '/etc/R/.java{{ jdk_default }}.env_conf'
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when:
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- jdk_java_home is defined
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- jdk_default is defined
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tags: [ 'r_software', 'r_profile', 'r_pkg', 'r_java' ]
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- name: Ensure that the R packages sources directory exists
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file:
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dest: '{{ r_source_plugins_dest_dir }}'
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state: directory
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owner: root
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group: root
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when: r_plugins_from_sources is defined
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- block:
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- name: Install the R plugins from the Ubuntu PPA
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apt:
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pkg: '{{ r_cran_ubuntu_packages }}'
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state: present
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cache_valid_time: 3600
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when: ansible_distribution == "Ubuntu"
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_deb_plugins' ]
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- block:
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- name: Install the R devtools package from CRAN
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command: >
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Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('devtools' %in% installed.packages()[,'Package'])) { install.packages(pkgs='devtools', repos=c('https://cloud.r-project.org/')); print('Added'); } else { print('Already installed'); }"
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register: install_devtools_result
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failed_when: "install_devtools_result.rc != 0 or 'had non-zero exit status' in install_devtools_result.stderr"
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changed_when: "'Added' in install_devtools_result.stdout"
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when: not r_install_cran_repo
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- name: Install the r-cran-devtools deb package
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apt:
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pkg: r-cran-devtools
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state: present
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cache_valid_time: 3600
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when: r_install_cran_repo
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- name: Install R packages from the cran sources repo or from an alternative repository, latest available version.
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command: >
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Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; install.packages(pkgs='{{ item.name }}', repos=c('{{ item.repo | default ('https://cloud.r-project.org') }}/')); print('Added'); } else { print('Already installed'); }"
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register: install_plugins_result
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failed_when: "install_plugins_result.rc != 0 or 'had non-zero exit status' in install_plugins_result.stderr"
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changed_when: "'Added' in install_plugins_result.stdout"
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with_items: '{{ r_plugins_list_to_install | default([]) }}'
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ignore_errors: True
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- name: Get the R packages sources that need to be installed
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get_url: url={{ item.url }} dest={{ r_source_plugins_dest_dir }}
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with_items: '{{ r_plugins_from_sources | default([]) }}'
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- name: Install R packages from the cran sources, specific versions.
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command: >
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Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { require(devtools); require(methods) ; install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
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register: install_s_plugins_result
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failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
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changed_when: '"Added" in install_s_plugins_result.stdout'
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with_items: '{{ r_plugins_from_sources | default([]) }}'
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ignore_errors: True
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_version' ]
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- name: github, add an API key if we have one
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copy:
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content: "GITHUB_PAT={{ r_plugins_from_github_api_token }}"
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dest: /root/.Renvironment
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when: r_plugins_from_github_api_token is defined
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- name: Install R packages from github
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command: >
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Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item.plugin_name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; options(repos='{{ r_cran_mirror_site }}/') ; install_github('{{ item.github_user }}/{{ item.plugin_name }}', ref = {{ item.version | default('master') }}, upgrade='never'); print('Added'); } else { print('Already Installed'); }"
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register: install_github_plugins_result
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failed_when: "install_github_plugins_result.rc != 0 or 'had non-zero exit status' in install_github_plugins_result.stderr"
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changed_when: "'Added' in install_github_plugins_result.stdout"
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with_items: '{{ r_plugins_from_github | default([]) }}'
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tags: [ 'r_software', 'r_pkg', 'r_plugins', 'r_plugins_github' ]
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ignore_errors: True
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- name: Remove R unwanted packages
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command: >
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Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }"
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register: remove_plugins_result
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failed_when: remove_plugins_result.rc != 0
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changed_when: "'Removed' in remove_plugins_result.stdout"
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with_items: '{{ r_plugins_list_to_remove | default([]) }}'
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when: r_plugins_list_to_remove is defined
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when: r_cran_install_from_sources
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tags: [ 'r_software', 'r_pkg', 'r_plugins' ]
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