Role Name ========= A role that installs the R environment, Role Variables -------------- The most important variables are listed below: ``` yaml # Set to True if you want install from the CRAN deb repository r_install_cran_repo: False #r_cran_mirror_site: http://cran.rstudio.com r_cran_set_default_mirror: True r_cran_mirror_site: https://cran.mirror.garr.it/mirrors/CRAN/ r_base_specific_version: False r_base_pkg_version: 3.4.4 r_packages_main_state: present r_packages_state: '{{ r_packages_main_state }}' r_sitelib_path: '/usr/local/lib/R/site-library' r_plugins_from_deb: True r_packages_cleanup: False # r_packages_updater: False r_package_updater_via_subversion: True r_package_updater_subversion_repo: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RPackagesManagement/ r_packages_svn_base_dir: /srv/r_updater r_packages_svn_files_prefix: '' r_packages_updater_also_upgrades_installed_packages: False # They need to be flat text files # 1 package per line #r_debian_packages_list_url # package[:cran mirror] # The CRAN mirror URL is optional #r_cran_packages_list_url # The CRAN mirror URL is optional #r_cran_packages_list_url # user/package_name #r_github_packages_list_url r_source_plugins_dest_dir: /var/cache/R r_distribution_required_packages: [] # - gdal-bin # - dans-gdal-scripts # - libgdal1-dev # - libgeos-dev # - libspatialite-dev # - proj # - proj-bin # - proj-data # - libproj-dev r_base_packages_list: - r-base # Some packages must be put on hold r_base_packages_hold_list: [] r_plugins_packages_list: - jags - r-cran-rjags - r-cran-abind - r-cran-boot - r-cran-class - r-cran-cluster - r-cran-coda - r-cran-codetools - r-cran-foreign - r-cran-lattice - r-cran-maptools - r-cran-mass - r-cran-matrix - r-cran-mgcv - r-cran-nlme - r-cran-nnet - r-cran-rpart - r-cran-sp - r-cran-spatial - r-cran-survival r_apt_additional_repos: - 'ppa:opencpu/jq' # RHEL/CentOS: # http://springdale.princeton.edu/data/springdale/7/x86_64/os/Computational/ # r_sitelib_el_path: '/usr/local/lib/R/library' r_el_dev_pkgs: True r_base_packages_el: - R - R-core - libRmath r_base_packages_dev_el: - R-core-devel - libRmath-devel r_base_packages_java_el: - R-java r_base_packages_java_dev_el: - R-java-devel r_plugins_list_to_install: [] # - { name: 'R2WinBUGS', repo: '{{ r_cran_mirror_site }}' } # - { name: 'R2jags', repo: '{{ r_cran_mirror_site }}' } # - { name: 'bayesmix', repo: '{{ r_cran_mirror_site }}' } # - { name: 'coda', repo: '{{ r_cran_mirror_site }}' } # - { name: 'rjags', repo: '{{ r_cran_mirror_site }}' } # - { name: 'runjags', repo: '{{ r_cran_mirror_site }}' } # - { name: 'base', repo: '{{ r_cran_mirror_site }}' } # - { name: 'compiler', repo: '{{ r_cran_mirror_site }}' } # - { name: 'datasets', repo: '{{ r_cran_mirror_site }}' } # - { name: 'grDevices', repo: '{{ r_cran_mirror_site }}' } # - { name: 'graphics', repo: '{{ r_cran_mirror_site }}' } # - { name: 'grid', repo: '{{ r_cran_mirror_site }}' } # - { name: 'methods', repo: '{{ r_cran_mirror_site }}' } # - { name: 'parallel', repo: '{{ r_cran_mirror_site }}' } # - { name: 'reshape', repo: '{{ r_cran_mirror_site }}' } # - { name: 'splines', repo: '{{ r_cran_mirror_site }}' } # - { name: 'stats', repo: '{{ r_cran_mirror_site }}' } # - { name: 'stats4', repo: '{{ r_cran_mirror_site }}' } # - { name: 'tcltk', repo: '{{ r_cran_mirror_site }}' } # - { name: 'tools', repo: '{{ r_cran_mirror_site }}' } # - { name: 'utils', repo: '{{ r_cran_mirror_site }}' } r_plugins_from_sources: [] # - { name: 'plyr', version: '1.7.1', source: 'plyr_1.7.1.tar.gz', url: 'http://cran.r-project.org/src/contrib/Archive/plyr/plyr_1.7.1.tar.gz' } r_plugins_from_github: [] # - { plugin_name: 'RFigisGeo', github_user: 'openfigis' } # - { plugin_name: 'rsdmx', github_user: 'opensdmx' } # r_plugins_list_to_remove: [] ``` Dependencies ------------ None License ------- EUPL-1.2 Author Information ------------------ Andrea Dell'Amico,