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ansible-role-R
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Use the $RSCRIPT_OPTIONS everywhere.

This commit is contained in:
Andrea Dell'Amico 2021-06-28 18:52:26 +02:00
parent df2095a42e
commit 97d779e028
Signed by: andrea.dellamico
GPG Key ID: 147ABE6CEB9E20FF
1 changed files with 2 additions and 2 deletions
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4
templates/update_r_packages.sh.j2
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@ -261,10 +261,10 @@ function r_github_pkgs() {
for l in $( cat $R_PKGS_GITHUB ) ; do for l in $( cat $R_PKGS_GITHUB ) ; do
pkg=$( echo $l | cut -d "/" -f 2 ) pkg=$( echo $l | cut -d "/" -f 2 )
if [ "$ACTION" == "upgrade" ] ; then if [ "$ACTION" == "upgrade" ] ; then
Rscript --slave --no-save --no-restore-history -e "require(devtools); require(methods); require(jsonlite) ; package_to_install <- '$l' ; refs <- jsonlite::read_json(sprintf('https://api.github.com/repos/%s/releases', package_to_install)) ; ref_to_install <- 'master'; if(length(refs)>0) { ref_to_install <- refs[[1]][['tag_name']] } ; devtools::install_github(package_to_install, ref = ref_to_install, upgrade='always')" Rscript $RSCRIPT_OPTIONS -e "require(devtools); require(methods); require(jsonlite) ; package_to_install <- '$l' ; refs <- jsonlite::read_json(sprintf('https://api.github.com/repos/%s/releases', package_to_install)) ; ref_to_install <- 'master'; if(length(refs)>0) { ref_to_install <- refs[[1]][['tag_name']] } ; devtools::install_github(package_to_install, ref = ref_to_install, upgrade='always')"
else else
Rscript --slave --no-save --no-restore-history -e "if (! ('$pkg' %in% installed.packages()[,'Package'])) { require(devtools); require(methods); require(jsonlite) ; package_to_install <- '$l' ; refs <- jsonlite::read_json(sprintf('https://api.github.com/repos/%s/releases', package_to_install)) ; ref_to_install <- 'master'; if(length(refs)>0) { ref_to_install <- refs[[1]][['tag_name']] } ; devtools::install_github(package_to_install, ref = ref_to_install, upgrade='always') }" Rscript $RSCRIPT_OPTIONS -e "if (! ('$pkg' %in% installed.packages()[,'Package'])) { require(devtools); require(methods); require(jsonlite) ; package_to_install <- '$l' ; refs <- jsonlite::read_json(sprintf('https://api.github.com/repos/%s/releases', package_to_install)) ; ref_to_install <- 'master'; if(length(refs)>0) { ref_to_install <- refs[[1]][['tag_name']] } ; devtools::install_github(package_to_install, ref = ref_to_install, upgrade='always') }"
fi fi
done done
else else