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ansible-role-R
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Fix the Rscript options.

This commit is contained in:
Andrea Dell'Amico 2021-03-03 13:44:37 +01:00
parent e1af001711
commit 6a1074841a
1 changed files with 5 additions and 5 deletions
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10
tasks/r-packages-install.yml
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@ -29,14 +29,14 @@
- block:
- name: Install the R devtools package from CRAN
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('devtools' %in% installed.packages()[,'Package'])) { install.packages(pkgs='devtools', repos=c('https://cloud.r-project.org/')); print('Added'); } else { print('Already installed'); }"
Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('devtools' %in% installed.packages()[,'Package'])) { install.packages(pkgs='devtools', repos=c('https://cloud.r-project.org/')); print('Added'); } else { print('Already installed'); }"
register: install_devtools_result
failed_when: "install_devtools_result.rc != 0 or 'had non-zero exit status' in install_devtools_result.stderr"
changed_when: "'Added' in install_devtools_result.stdout"
- name: Install R packages from the cran sources repo or from an alternative repository, latest available version.
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; install.packages(pkgs='{{ item.name }}', repos=c('{{ item.repo | default ('https://cloud.r-project.org') }}/')); print('Added'); } else { print('Already installed'); }"
Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; install.packages(pkgs='{{ item.name }}', repos=c('{{ item.repo | default ('https://cloud.r-project.org') }}/')); print('Added'); } else { print('Already installed'); }"
register: install_plugins_result
failed_when: "install_plugins_result.rc != 0 or 'had non-zero exit status' in install_plugins_result.stderr"
changed_when: "'Added' in install_plugins_result.stdout"
@ -50,7 +50,7 @@
- name: Install R packages from the cran sources, specific versions.
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { require(devtools); require(methods) ; install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item.name }}' %in% installed.packages()[,'Package'])) { install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else if (packageVersion('{{ item.name }}') != '{{ item.version }}') { require(devtools); require(methods) ; install.packages('{{ r_source_plugins_dest_dir }}/{{ item.source }}', repos = NULL, type='source'); print('Added'); } else { print('Already Installed'); }"
register: install_s_plugins_result
failed_when: "install_s_plugins_result.rc != 0 or 'had non-zero exit status' in install_s_plugins_result.stderr"
changed_when: '"Added" in install_s_plugins_result.stdout'
@ -60,7 +60,7 @@
- name: Install R packages from github
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item.plugin_name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; options(repos='{{ r_cran_mirror_site }}/') ; install_github('{{ item.github_user }}/{{ item.plugin_name }}'); print('Added'); } else { print('Already Installed'); }"
Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item.plugin_name }}' %in% installed.packages()[,'Package'])) { require(devtools); require(methods) ; options(repos='{{ r_cran_mirror_site }}/') ; install_github('{{ item.github_user }}/{{ item.plugin_name }}'); print('Added'); } else { print('Already Installed'); }"
register: install_github_plugins_result
failed_when: "install_github_plugins_result.rc != 0 or 'had non-zero exit status' in install_github_plugins_result.stderr"
changed_when: "'Added' in install_github_plugins_result.stdout"
@ -70,7 +70,7 @@
- name: Remove R unwanted packages
command: >
Rscript --slave --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }"
Rscript --slave --no-site-file --no-init-file --no-save --no-restore-history -e "if (! ('{{ item }}' %in% installed.packages()[,'Package'])) { print('Not installed'); } else { remove.packages(pkgs='{{ item }}'); print('Removed'); }"
register: remove_plugins_result
failed_when: remove_plugins_result.rc != 0
changed_when: "'Removed' in remove_plugins_result.stdout"