ansible-role-R/defaults/main.yml

---
#
# https://cran.r-project.org/bin/linux/ubuntu/
#
# To list the installed R packages
# Run R, then execute
# packinfo <- installed.packages (fields = c ("Package", "Version"))
# packinfo[,c("Package", "Version")]
#
# The install/remove script has been taken from here: http://adamj.eu/tech/2014/07/19/installing-and-removing-r-packages-with-ansible/
#
# Set to True if you want install from the CRAN deb repository
r_install_cran_repo: false
# This si the CRAN main repository, that contains the r-base-* packages
r_cran_ubuntu_repo_key: 'E298A3A825C0D65DFD57CBB651716619E084DAB9'
r_cran_ubuntu_repo: 'deb https://cloud.r-project.org/bin/linux/ubuntu {{ ansible_distribution_release }}-cran40/'
# Use 'marutter/c2d4u3.5' for R 3.6
r_cran_ubuntu_packages_ppa_trusty: 'ppa:marutter/c2d4u'
# 4.1, Ubuntu 18.04+
r_cran_ubuntu_packages_ppa: 'ppa:c2d4u.team/c2d4u4.0+'
r_apt_additional_repos_trusty:
  - 'ppa:opencpu/jq'
r_apt_additional_repos: []
#  - 'ppa:cran/v8'
#  - 'ppa:ubuntugis/ppa'
#  - 'ppa:cran/libgit2'

r_cran_set_default_mirror: true
r_cran_mirror_site: https://cran.mirror.garr.it/mirrors/CRAN/
r_base_versioned: false
r_base_pkg_version: 4.2.3-1.1804.0
r_sitelib_path: '/usr/local/lib/R/site-library'
r_plugins_from_deb: true
r_packages_cleanup: false
r_install_rprofile_site: true
#
r_packages_updater: true
r_package_updater_via_subversion: false
r_package_updater_subversion_repo: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/RConfiguration/RPackagesManagement/
r_packages_svn_base_dir: /srv/r_updater
r_package_updater_via_git: true
r_package_updater_git_repo: 'https://code-repo.d4science.org/gCubeSystem/r-packages-list'
r_packages_git_base_dir: /srv/r_updater
r_packages_files_prefix: ''
r_packages_updater_also_upgrades_installed_packages: true
r_packages_updater_for_github_only: true
# Set this to true if you want to run the installer once, and then never after the first execution
r_packages_updater_run_once: false
# They need to be flat text files
# 1 package per line
#r_debian_packages_list_url
#r_el_packages_list_url
# package[:cran mirror]
# The CRAN mirror URL is optional
#r_cran_packages_list_url
# The CRAN mirror URL is optional
#r_cran_packages_list_url
# user/package_name
#r_github_packages_list_url

r_source_plugins_dest_dir: /var/cache/R

r_base_packages_list:
  - r-base
  - r-base-core
  - r-base-dev
  - r-base-html
  - r-mathlib

r_base_versioned_packages_list:
  # - r-base=4.2.3-1.1804.0 # r-recommended is a requirement and it cannot be installed
  - "r-base-core={{ r_base_pkg_version }}"
  - "r-base-dev={{ r_base_pkg_version }}"
  - "r-base-html={{ r_base_pkg_version }}"
  - "r-mathlib={{ r_base_pkg_version }}"

r_distribution_required_packages:
  - jags
  - git
  - subversion
  - gdal-bin
  - libgdal-dev
  - libgeos-dev
  - libspatialite-dev
  - proj-bin
  - proj-data
  - libproj-dev
  - libcurl4-openssl-dev
  - texlive
  - texlive-base
  - texlive-binaries
  - texlive-latex-base
  - texlive-latex-extra
  - texlive-formats-extra
  - texlive-xetex
  - libnetcdf-dev
  - netcdf-bin
  - libfribidi-dev
  - libfribidi-bin
  - libfreetype6-dev
  - libxft-dev

# Some packages that must be put on hold
r_base_packages_hold_list: []
  # - r-base-core
  # - r-base-dev
  # - r-base-html
  # - r-mathlib

r_plugins_packages_list: []

# RHEL/CentOS:
# http://springdale.princeton.edu/data/springdale/7/x86_64/os/Computational/
#
r_sitelib_el_path: '/usr/local/lib/R/library'
r_el_dev_pkgs: true
r_base_packages_el:
  - R
  - R-core
  - libRmath

r_base_packages_dev_el:
  - R-core-devel
  - libRmath-devel

r_base_packages_java_el:
  - R-java

r_base_packages_java_dev_el:
  - R-java-devel

r_distribution_required_el_packages: []

r_cran_install_from_ppa: "{% if r_base_versioned %}false{% else %}true{% endif %}"
r_cran_ubuntu_packages:
  - r-cran-abind
  - r-cran-askpass
  - r-cran-backports
  - r-cran-base64enc
  - r-cran-bayesplot
  - r-cran-bh
  - r-cran-boot
  - r-cran-bslib
  - r-cran-cachem
  - r-cran-callr
  - r-cran-checkmate
  - r-cran-class
  - r-cran-cli
  - r-cran-cluster
  - r-cran-coda
  - r-cran-codetools
  - r-cran-colorspace
  - r-cran-colourpicker
  - r-cran-commonmark
  - r-cran-cpp11
  - r-cran-crayon
  - r-cran-crosstalk
  - r-cran-curl
  - r-cran-desc
  - r-cran-digest
  - r-cran-doparallel
  - r-cran-dplyr
  - r-cran-dt
  - r-cran-dygraphs
  - r-cran-ellipsis
  - r-cran-fansi
  - r-cran-farver
  - r-cran-fastmap
  - r-cran-foreign
  - r-cran-fs
  - r-cran-generics
  - r-cran-ggplot2
  - r-cran-ggridges
  - r-cran-glue
  - r-cran-gridextra
  - r-cran-gtable
  - r-cran-gtools
  - r-cran-htmltools
  - r-cran-htmlwidgets
  - r-cran-httpuv
  - r-cran-igraph
  - r-cran-inline
  - r-cran-isoband
  - r-cran-jquerylib
  - r-cran-jsonlite
  - r-cran-kernsmooth
  - r-cran-labeling
  - r-cran-later
  - r-cran-lattice
  - r-cran-lazyeval
  - r-cran-lifecycle
  - r-cran-littler
  - r-cran-lme4
  - r-cran-loo
  - r-cran-magrittr
  - r-cran-maptools
  - r-cran-markdown
  - r-cran-mass
  - r-cran-matrix
  - r-cran-matrixstats
  - r-cran-mgcv
  - r-cran-mime
  - r-cran-miniui
  - r-cran-minqa
  - r-cran-munsell
  - r-cran-nlme
  - r-cran-nloptr
  - r-cran-nnet
  - r-cran-openssl
  - r-cran-packrat
  - r-cran-pillar
  - r-cran-pkgbuild
  - r-cran-pkgconfig
  - r-cran-plyr
  - r-cran-prettyunits
  - r-cran-processx
  - r-cran-promises
  - r-cran-ps
  - r-cran-purrr
  - r-cran-r2jags
  - r-cran-r6
  - r-cran-rappdirs
  - r-cran-rcolorbrewer
  - r-cran-rcpp
  - r-cran-rcppeigen
  - r-cran-rcppparallel
  - r-cran-reshape2
  - r-cran-rjags
  - r-cran-rlang
  - r-cran-rodbc
  - r-cran-rpart
  - r-cran-rprojroot
  - r-cran-rsconnect
  - r-cran-rstanarm
  - r-cran-rstantools
  - r-cran-rstudioapi
  - r-cran-sass
  - r-cran-scales
  - r-cran-shiny
  - r-cran-shinyjs
  - r-cran-shinystan
  - r-cran-shinythemes
  - r-cran-sourcetools
  - r-cran-sp
  - r-cran-spatial
  - r-cran-stanheaders
  - r-cran-stringi
  - r-cran-stringr
  - r-cran-survival
  - r-cran-svglite
  - r-cran-sys
  - r-cran-systemfonts
  - r-cran-threejs
  - r-cran-tibble
  - r-cran-tidyselect
  - r-cran-utf8
  - r-cran-v8
  - r-cran-vctrs
  - r-cran-viridislite
  - r-cran-withr
  - r-cran-xfun
  - r-cran-xtable
  - r-cran-xts
  - r-cran-yaml
  - r-cran-zoo

r_cran_install_from_sources: true
r_plugins_list_to_install: []
#   - { name: 'robis', repo: '{{ r_cran_mirror_site }}' }

r_plugins_from_sources: []
#   - { name: 'plyr', version: '1.7.1', source: 'plyr_1.7.1.tar.gz', url: 'http://cran.r-project.org/src/contrib/Archive/plyr/plyr_1.7.1.tar.gz' }

# The 'repo' scope is required
# r_plugins_from_github_api_token: 'Put it into a vault file'
# The 'version' parameter is optional. The default is 'master'
r_plugins_from_github: []
#   - { plugin_name: 'RFigisGeo', github_user: 'openfigis', version: 'v0.2-beta1' }
#   - { plugin_name: 'rsdmx', github_user: 'opensdmx' }

# 
r_plugins_list_to_remove: []