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Added mapping of UNiprot and updated pid types

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Sandro La Bruzzo 2023-03-09 14:21:23 +01:00
parent 16c87331e4
commit da45601f2c
2 changed files with 10 additions and 1 deletions
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9
docs/data-model/pids-and-identifiers.md
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@ -18,6 +18,10 @@ Such a policy defines a list of data sources that are considered authoritative f
| doi | [Crossref](https://www.crossref.org), [Datacite](https://datacite.org) | | doi | [Crossref](https://www.crossref.org), [Datacite](https://datacite.org) |
| pmc, pmid | [Europe PubMed Central](https://europepmc.org/), [PubMed Central](https://www.ncbi.nlm.nih.gov/pmc) | | pmc, pmid | [Europe PubMed Central](https://europepmc.org/), [PubMed Central](https://www.ncbi.nlm.nih.gov/pmc) |
| arXiv | [arXiv.org e-Print Archive](https://arxiv.org/) | | arXiv | [arXiv.org e-Print Archive](https://arxiv.org/) |
| uniprot | [Protein Data Bank](http://www.pdb.org/) |
| ena | [Protein Data Bank](http://www.pdb.org/) |
| pdb | [Protein Data Bank](http://www.pdb.org/) |
There is an exception though: Handle(s) are minted by several repositories; as listing them all would not be a viable option, to avoid losing them as PIDs, Handles bypass the PID authority filtering rule. There is an exception though: Handle(s) are minted by several repositories; as listing them all would not be a viable option, to avoid losing them as PIDs, Handles bypass the PID authority filtering rule.
In all other cases, PIDs are be included in the graph as alternate Identifiers. In all other cases, PIDs are be included in the graph as alternate Identifiers.
@ -63,12 +67,15 @@ When the record is collected from a source which is not authoritative for any ty
Currently, the following data sources are used as "PID authorities": Currently, the following data sources are used as "PID authorities":
| PID Type | Prefix (12 chars) | Authority | | PID Type | Prefix (12 chars) | Authority |
|-----------|------------------------|-----------------------------------------| |-----------|------------------------|-------------------------------------------|
| doi | `doi_________` | Crossref, Datacite, Zenodo | | doi | `doi_________` | Crossref, Datacite, Zenodo |
| pmc | `pmc_________` | Europe PubMed Central, PubMed Central | | pmc | `pmc_________` | Europe PubMed Central, PubMed Central |
| pmid | `pmid________` | Europe PubMed Central, PubMed Central | | pmid | `pmid________` | Europe PubMed Central, PubMed Central |
| arXiv | `arXiv_______` | arXiv.org e-Print Archive | | arXiv | `arXiv_______` | arXiv.org e-Print Archive |
| handle | `handle______` | any repository | | handle | `handle______` | any repository |
| ena | `ena_________` | EMBL-EBI |
| pdb | `pdb_________` | EMBL-EBI |
| uniprot | `uniprot_____` | EMBL-EBI |
OpenAIRE also perform duplicate identification (see the [dedicated section for details](/data-provision/deduplication)). OpenAIRE also perform duplicate identification (see the [dedicated section for details](/data-provision/deduplication)).
All duplicates are **merged** together in a **representative record** which must be assigned a dedicated OpenAIRE identifier (i.e. it cannot have the identifier of one of the aggregated record). All duplicates are **merged** together in a **representative record** which must be assigned a dedicated OpenAIRE identifier (i.e. it cannot have the identifier of one of the aggregated record).

2
sidebars.js
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@ -88,6 +88,8 @@ const sidebars = {
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/pubmed' }, { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/pubmed' },
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/datacite' }, { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/datacite' },
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/ebi', label: 'EMBL-EBI' }, { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/ebi', label: 'EMBL-EBI' },
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/uniprot', label: 'UniProtKB/Swiss-Prot' },
] ]
} }
] ]