From 2f3e832d4d3c3af155c7bf8490d4b001202dc93f Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 18 Nov 2022 17:53:03 +0100 Subject: [PATCH 1/8] [Bulk Download] first versione of the documentation --- docs/download.md | 69 +++++++++++++++++++++++++++++++++++++++++++++--- 1 file changed, 65 insertions(+), 4 deletions(-) diff --git a/docs/download.md b/docs/download.md index 6a6e6a8..99ae077 100644 --- a/docs/download.md +++ b/docs/download.md @@ -4,11 +4,72 @@ sidebar_position: 4 # Bulk downloads -In order to facilitate users, different dumps are available. All are available under the Zenodo community called [OpenAIRE Research Graph](https://zenodo.org/communities/openaire-research-graph). -Here we provide detailed documentation about the full dump: +In order to facilitate users, different dumps are available under the Zenodo community called [OpenAIRE Research Graph](https://zenodo.org/communities/openaire-research-graph). +In the following the list of Dumps available: -* JSON dump: https://doi.org/10.5281/zenodo.3516917 -* JSON schema: https://doi.org/10.5281/zenodo.4238938 +* The whole OpenAIRE Research Graph Dump + + Dataset: https://doi.org/10.5281/zenodo.3516917 + + Schema: https://doi.org/10.5281/zenodo.4238938 + + This dataset is licensed under a Creative Commons Attribution 4.0 International License. +It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is +a tar archive containing gz files, each with one json per line. + +* The OpenAIRE COVID-19 dump + + Dataset: https://doi.org/10.5281/zenodo.6638745 + + Schema: https://doi.org/10.5281/zenodo.6372977 + + This dataset is licensed under a Creative Commons Attribution 4.0 International License. + It contains metadata records of publications, research data, software and projects on the topic of Corona Virus and COVID-19. +This dump is part of the activities of OpenAIRE to support the fight against COVID-19 together with the OpenAIRE COVID-19 Gateway. +The dump consists of a tar archive containing gzip files with one json per line. + +* The dump of funded products + + Dataset: https://doi.org/10.5281/zenodo.6634431 + + Schema: https://doi.org/10.5281/zenodo.6372977 + + This dataset is licensed under a Creative Commons Attribution 4.0 International License. +It contains metadata records of research products (research literature, data, software, other types of research products) with funding +information available in the OpenAIRE Graph. Records are grouped by funder in a dedicated archive file. Each tar archive contains +gzip files, each with one json record per line. + +* The dump of delta projects + + Dataset: https://doi.org/10.5281/zenodo.7119633 + + Schema: https://doi.org/10.5281/zenodo.5799514 + + This dataset is licensed under a Creative Commons Attribution 4.0 International License. + It contains the metadata records of projects collected by OpenAIRE in a given time frame. Usually one deposition of collected projects is done for each release of the OpenAIRE Graph + The deposition is one tar archive containing gzip files, each with one json record per line. + +* The dumps about research communities, initiatives and infrastructures + + Dataset: https://doi.org/10.5281/zenodo.6638478 + + Schema: https://doi.org/10.5281/zenodo.6372977 + + This dataset is licensed under a Creative Commons Attribution 4.0 International License. +The dataset contains one file per community/initiative/infrastructure collaborating with OpenAIRE. Check out also their community gateways on + CONNECT. Each file is a tar archive containing gzip files with one json per line. The only communities/research initiative/infrastructure we dump are those visible to everyone. + +* The dump of ScholeXplorer + + Dataset: https://doi.org/10.5281/zenodo.6338616 + + Schema (Scholix version 3): https://doi.org/10.5281/zenodo.1120275 + + Schema (Scholix version 4): https://doi.org/10.5281/zenodo.6351557 + + This dataset is licensed under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. +The dataset contains the GZ-compressed dump of the Scholix links exposed by the OpenAIRE ScholeXplorer service. + :::note Tip! From 989d9ea34c41e64bacf3b4ec67308d4a76a7ffd8 Mon Sep 17 00:00:00 2001 From: Serafeim Chatzopoulos Date: Mon, 28 Nov 2022 14:19:40 +0200 Subject: [PATCH 2/8] Split bulk downloads page in sub-pages --- docs/downloads/downloads.md | 41 ++++++++++++++++++++ docs/downloads/starter-kit.md | 6 +++ docs/{download.md => downloads/subgraphs.md} | 32 ++++----------- sidebars.js | 11 ++++-- 4 files changed, 63 insertions(+), 27 deletions(-) create mode 100644 docs/downloads/downloads.md create mode 100644 docs/downloads/starter-kit.md rename docs/{download.md => downloads/subgraphs.md} (65%) diff --git a/docs/downloads/downloads.md b/docs/downloads/downloads.md new file mode 100644 index 0000000..ef4c702 --- /dev/null +++ b/docs/downloads/downloads.md @@ -0,0 +1,41 @@ +--- +sidebar_position: 4 +--- + +# Bulk downloads + +You can download the full OpenAIRE Research Dump as well as its schema from the following links: + + Dataset: https://doi.org/10.5281/zenodo.3516917 + + Schema: https://doi.org/10.5281/zenodo.4238938 + + This dataset is licensed under a Creative Commons Attribution 4.0 International License. +It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is +a tar archive containing gz files, each with one json per line. + + +:::note Tip! + +For a visual and interactive overview of the JSON schema, we suggest to use a JSON schema viewer like [jsonschemaviewer](https://navneethg.github.io/jsonschemaviewer/) (you just need to copy the schema and then you can easily navigate through the nodes). + +::: + + + diff --git a/docs/downloads/starter-kit.md b/docs/downloads/starter-kit.md new file mode 100644 index 0000000..8071d5d --- /dev/null +++ b/docs/downloads/starter-kit.md @@ -0,0 +1,6 @@ +--- +sidebar_position: 1 +--- + +# Starter-kit + diff --git a/docs/download.md b/docs/downloads/subgraphs.md similarity index 65% rename from docs/download.md rename to docs/downloads/subgraphs.md index 99ae077..53b9a04 100644 --- a/docs/download.md +++ b/docs/downloads/subgraphs.md @@ -2,22 +2,12 @@ sidebar_position: 4 --- -# Bulk downloads +# Sub-graphs and other formats -In order to facilitate users, different dumps are available under the Zenodo community called [OpenAIRE Research Graph](https://zenodo.org/communities/openaire-research-graph). -In the following the list of Dumps available: +In order to facilitate users, different dumps and formats are available under the Zenodo community called [OpenAIRE Research Graph](https://zenodo.org/communities/openaire-research-graph). +In the following, you can find the list of alternative Dumps currently available: -* The whole OpenAIRE Research Graph Dump - - Dataset: https://doi.org/10.5281/zenodo.3516917 - - Schema: https://doi.org/10.5281/zenodo.4238938 - - This dataset is licensed under a Creative Commons Attribution 4.0 International License. -It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is -a tar archive containing gz files, each with one json per line. - -* The OpenAIRE COVID-19 dump +## The OpenAIRE COVID-19 dump Dataset: https://doi.org/10.5281/zenodo.6638745 @@ -28,7 +18,7 @@ a tar archive containing gz files, each with one json per line. This dump is part of the activities of OpenAIRE to support the fight against COVID-19 together with the OpenAIRE COVID-19 Gateway. The dump consists of a tar archive containing gzip files with one json per line. -* The dump of funded products +## The dump of funded products Dataset: https://doi.org/10.5281/zenodo.6634431 @@ -39,7 +29,7 @@ It contains metadata records of research products (research literature, data, so information available in the OpenAIRE Graph. Records are grouped by funder in a dedicated archive file. Each tar archive contains gzip files, each with one json record per line. -* The dump of delta projects +## The dump of delta projects Dataset: https://doi.org/10.5281/zenodo.7119633 @@ -49,7 +39,7 @@ gzip files, each with one json record per line. It contains the metadata records of projects collected by OpenAIRE in a given time frame. Usually one deposition of collected projects is done for each release of the OpenAIRE Graph The deposition is one tar archive containing gzip files, each with one json record per line. -* The dumps about research communities, initiatives and infrastructures +## The dumps about research communities, initiatives and infrastructures Dataset: https://doi.org/10.5281/zenodo.6638478 @@ -59,7 +49,7 @@ gzip files, each with one json record per line. The dataset contains one file per community/initiative/infrastructure collaborating with OpenAIRE. Check out also their community gateways on CONNECT. Each file is a tar archive containing gzip files with one json per line. The only communities/research initiative/infrastructure we dump are those visible to everyone. -* The dump of ScholeXplorer +## The dump of ScholeXplorer Dataset: https://doi.org/10.5281/zenodo.6338616 @@ -70,9 +60,3 @@ The dataset contains one file per community/initiative/infrastructure collaborat This dataset is licensed under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. The dataset contains the GZ-compressed dump of the Scholix links exposed by the OpenAIRE ScholeXplorer service. - -:::note Tip! - -For a visual and interactive overview of the JSON schema, we suggest to use a JSON schema viewer like [jsonschemaviewer](https://navneethg.github.io/jsonschemaviewer/) (you just need to copy the schema and then you can easily navigate through the nodes). - -::: diff --git a/sidebars.js b/sidebars.js index ba0f462..f7d0fe6 100644 --- a/sidebars.js +++ b/sidebars.js @@ -51,9 +51,14 @@ const sidebars = { href: "https://graph.openaire.eu/develop/overview.html" }, { - type: 'doc', - id: 'download' - }, + type: 'category', + label: 'Bulk downloads', + link: {type: 'doc', id: 'downloads/downloads'}, + items: [ + { type: 'doc', id: 'downloads/starter-kit' }, + { type: 'doc', id: 'downloads/subgraphs' }, + ] + }, { type: 'category', label: "Data provision", From a61a407c14aabb4d4a7ab04d569bcbcca290132c Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Mon, 5 Dec 2022 12:45:57 +0100 Subject: [PATCH 3/8] [CommunityModel] first version of the community model --- docs/downloads/alternative-model/cfhb.md | 30 ++++ .../alternative-model/communityInstance.md | 37 +++++ docs/downloads/alternative-model/context.md | 46 ++++++ .../alternative-model/extendedresult.md | 143 ++++++++++++++++++ docs/downloads/alternative-model/funder.md | 72 +++++++++ docs/downloads/alternative-model/project.md | 134 ++++++++++++++++ docs/downloads/alternative-model/validated.md | 41 +++++ docs/downloads/alternativedump.md | 16 ++ docs/downloads/downloads.md | 5 +- docs/downloads/subgraphs.md | 3 +- 10 files changed, 524 insertions(+), 3 deletions(-) create mode 100644 docs/downloads/alternative-model/cfhb.md create mode 100644 docs/downloads/alternative-model/communityInstance.md create mode 100644 docs/downloads/alternative-model/context.md create mode 100644 docs/downloads/alternative-model/extendedresult.md create mode 100644 docs/downloads/alternative-model/funder.md create mode 100644 docs/downloads/alternative-model/project.md create mode 100644 docs/downloads/alternative-model/validated.md create mode 100644 docs/downloads/alternativedump.md diff --git a/docs/downloads/alternative-model/cfhb.md b/docs/downloads/alternative-model/cfhb.md new file mode 100644 index 0000000..168be58 --- /dev/null +++ b/docs/downloads/alternative-model/cfhb.md @@ -0,0 +1,30 @@ +--- + +sidebar_position: 1 + +--- + +# CfHbKeyValue + +Information about the sources from which the record has been collected + + + @JsonSchema(description = "the OpenAIRE identifier of the data source") +### key +_Type: String • Cardinality: ONE_ + +the OpenAIRE identifier of the data source + +```json +"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2" +``` + +### value +_Type: String • Cardinality: ONE_ + +The name of the data source + +```json +"value":"Crossref" +``` + diff --git a/docs/downloads/alternative-model/communityInstance.md b/docs/downloads/alternative-model/communityInstance.md new file mode 100644 index 0000000..0ec83ca --- /dev/null +++ b/docs/downloads/alternative-model/communityInstance.md @@ -0,0 +1,37 @@ +--- + +sidebar_position: 1 + +--- + +# CommunityInstance + +It is a subclass of [Instance](../../data-model/entities/result#instance) extended with information regarding the collection and hosting source for this materialization of the result. + +### hostedby +_Type: [CfHbKeyValue](./cfhb) • Cardinality: ONE_ + +Information about the source from which the instance can be viewed or downloaded. + +```json + +"hostedby": { + "key": "10|issn___print::35ee75a5ad42581d604be113a8f56427", + "value": "New Phytologist" + }, + +``` + +### collectedfrom +_Type: [CfHbKeyValue](./cfhb) • Cardinality: ONE_ + +Information about the source from which the record has been collected + + +```json + +"collectedfrom": { + "key": "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2", + "value": "Crossref" + } +``` \ No newline at end of file diff --git a/docs/downloads/alternative-model/context.md b/docs/downloads/alternative-model/context.md new file mode 100644 index 0000000..0b50ca3 --- /dev/null +++ b/docs/downloads/alternative-model/context.md @@ -0,0 +1,46 @@ +--- + +sidebar_position: 1 + +--- + +# Context + +Information related to research initiative/community (RI/RC) related to the result + +### code +_Type: String • Cardinality: ONE_ + +Code identifying the RI/RC. + +```json +"code":"sdsn-gr" + +``` + + +### label +_Type: String • Cardinality: ONE_ + +Label of the RI/RC + +```json +"label":"SDSN - Greece" +``` + +### provenance +_Type: [Provenance](../../../data-model/entities/other#provenance-2) • Cardinality: MANY_ + +Why this result is associated to the RI/RC. + +```json + +"provenance":[{ + "provenance":"Inferred by OpenAIRE", + "trust":"0.9" + }, + ... + ] + +``` + diff --git a/docs/downloads/alternative-model/extendedresult.md b/docs/downloads/alternative-model/extendedresult.md new file mode 100644 index 0000000..2e90acc --- /dev/null +++ b/docs/downloads/alternative-model/extendedresult.md @@ -0,0 +1,143 @@ +--- + +sidebar_position: 1 + +--- + + +# Extended Result + + +It is a subclass of [Result](../../../data-model/entities/result) extended with information regarding projects (and funders), research communities/infrastructure and related data sources. + + + +### projects + +_Type: [Project](project.md) • Cardinality: MANY_ + + +List of projects (i.e. grants) that (co-)funded the production of the research results + + +```json + + +"projects": [ + { + "id": "40|corda__h2020::94c4a066401e22002c4811a301bb4655", + "code": "727929", + "acronym": "TomRes", + "title": "A NOVEL AND INTEGRATED APPROACH TO INCREASE MULTIPLE AND COMBINED STRESS TOLERANCE IN PLANTS USING TOMATO AS A MODEL", + "funder": { + "shortName": "EC", + "name": "European Commission", + "jurisdiction": "EU", + "fundingStream": "H2020" + }, + "provenance": { + "provenance": "Harvested", + "trust": "0.900000000000000022" + }, + "validated": { + "validationDate": "2021-0101", + "validatedByFunder": true + } + }, + ... + ] + +``` + +### context + +_Type: [Context](./context) • Cardinality: MANY_ + + +Reference to relevant research infrastructure, initiative or communities (RI/RC) among those collaborating with OpenAIRE. Please see https://connect.openaire.eu" that are publicly visible + + +```json + + +"context":[ + { + "code":"sdsn-gr", + "label":"SDSN - Greece", + "provenance":[ + { + "provenance":"Inferred by OpenAIRE", + "trust":"0.9" + } + ] + }, + ... + ] + +``` + + + +### collectedfrom + +_Type: [CfHbKeyValue](./cfhb) • Cardinality: MANY_ + + +Information about the sources from which the record has been collected + + +```json + +"collectedfrom":[ + { + "key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2", + "value":"Crossref" + }, + ... + ] + +``` + + +### instance + +_Type: [CommunityInstance](./communityInstance) • Cardinality: MANY_ + +Information about the source from which the instance can be viewed or downloaded. + +```json + + +"instance": [ + { + "license": "http://doi.wiley.com/10.1002/tdm_license_1.1", + "accessright": { + "code": "c_16ec", + "label": "RESTRICTED", + "scheme": "http://vocabularies.coar-repositories.org/documentation/access_rights/", + "openAccessRoute": null + }, + "type": "Article", + "url": [ + "https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fnph.15014", + "http://onlinelibrary.wiley.com/wol1/doi/10.1111/nph.15014/fullpdf", + "http://dx.doi.org/10.1111/nph.15014" + ], + "publicationdate": "2018-02-09", + "refereed": "UNKNOWN", + "hostedby": { + "key": "10|issn___print::35ee75a5ad42581d604be113a8f56427", + "value": "New Phytologist" + }, + "collectedfrom": { + "key": "10|openaire____::081b82f96300b6a6e3d282bad31cb6e2", + "value": "Crossref" + } + }, + ... + ] + + +``` + + diff --git a/docs/downloads/alternative-model/funder.md b/docs/downloads/alternative-model/funder.md new file mode 100644 index 0000000..49671c3 --- /dev/null +++ b/docs/downloads/alternative-model/funder.md @@ -0,0 +1,72 @@ +--- + +sidebar_position: 1 + +--- + +# Funder + + +Information about the funder funding the project + + +### fundingStream + +_Type: String • Cardinality: ONE_ + + +Funding information for the project. + + +```json + +"funding_stream": "H2020" + + +``` + +### jurisdiction + +_Type: String • Cardinality: ONE_ + + +Geographical jurisdiction (e.g. for European Commission is EU, for Croatian Science Foundation is HR). + + +```json + +"jurisdiction": "EU" + +``` + + +### name + +_Type: String • Cardinality: ONE_ + + +The name of the funder. + + +```json + +"name": "European Commission" + +``` + + +### shortName + +_Type: String • Cardinality: ONE_ + + +The short name of the funder. + + +```json + +"shortName": "EC" + +``` + + diff --git a/docs/downloads/alternative-model/project.md b/docs/downloads/alternative-model/project.md new file mode 100644 index 0000000..b0bae91 --- /dev/null +++ b/docs/downloads/alternative-model/project.md @@ -0,0 +1,134 @@ +--- + +sidebar_position: 1 + +--- + + + +# Project + + +The information about the projects related to the result + + +### id + +_Type: String • Cardinality: ONE_ + + +Main entity identifier, created according to the [OpenAIRE entity identifier and PID mapping policy](../../data-model/pids-and-identifiers). + + +```json + +"id": "40|corda__h2020::70ea22400fd890c5033cb31642c4ae68" + +``` + + +### code + +_Type: String • Cardinality: ONE_ + + +Ξ€he grant agreement code of the project. + + +```json + +"code": "777541" + +``` + + +### acronym + +_Type: String • Cardinality: ONE_ + + +Project's acronym. + + +```json + +"acronym": "OpenAIRE-Advance" + +``` + + +### title + +_Type: String • Cardinality: ONE_ + + +Project's title. + + +```json + +"title": "OpenAIRE Advancing Open Scholarship" + +``` + + +### funder + +_Type [Funder](funder.md) • Cardinality: ONE_ + + +Information about the funder funding the project + + +```json + + +"funder": { + "shortName": "EC", + "name": "European Commission", + "jurisdiction": "EU", + "fundingStream": "H2020" + } + + +``` + +### provenace + + +_Type [Provenance](../../data-model/entities/other#provenance-2) • Cardinality: ONE_ + + +The reason why the project is associated to the result + + +```json + + +"provenance": { + "provenance": "Harvested", + "trust": "0.900000000000000022" + } + +``` + + +### validated + + +_Type [Validated](validated.md) • Cardinality: ONE_ + + +Specifies it the association between the project and the result was validated + + +```json + + +"validated": { + "validationDate": "2021-0101", + "validatedByFunder": true + } + +``` + diff --git a/docs/downloads/alternative-model/validated.md b/docs/downloads/alternative-model/validated.md new file mode 100644 index 0000000..b6be470 --- /dev/null +++ b/docs/downloads/alternative-model/validated.md @@ -0,0 +1,41 @@ +--- + +sidebar_position: 1 + +--- + +# Validated + + +Information about the validtion of the association between the result and the funding information + + +### validationDate + +_Type: String • Cardinality: ONE_ + + +When OpenAIRE collected the association between the funding and the result from an authoritative source (i.e. Sygma) + + +```json + +"validationDate": "2021-0101" + +``` + + +### validatedByFunder + +_Type: Boolean • Cardinality: ONE_ + + +Specifies if the validation comes from the funder + + +```json + + +"validatedByFunder": true + +``` \ No newline at end of file diff --git a/docs/downloads/alternativedump.md b/docs/downloads/alternativedump.md new file mode 100644 index 0000000..b22f3b2 --- /dev/null +++ b/docs/downloads/alternativedump.md @@ -0,0 +1,16 @@ +--- +sidebar_position: 4 +--- + +# Dump of Research Communities/Infrastructure and products related to projects + +The dump for Research Communities/Infrastructure and products related to projects do not follow the model used to dump the whole graph. +The main differences are: + + * only research products are dumped (no relations, and entities different from results) + * the dumped results are extended with information that can be inferred in the whole dump namely: + * funding information if present + * associated research community/infrastructure + * associated data sources + +So we have just one entity which is the [extended result](alternative-model/extendedresult.md) \ No newline at end of file diff --git a/docs/downloads/downloads.md b/docs/downloads/downloads.md index ef4c702..1bdcdcb 100644 --- a/docs/downloads/downloads.md +++ b/docs/downloads/downloads.md @@ -9,8 +9,9 @@ You can download the full OpenAIRE Research Dump as well as its schema from the Dataset: https://doi.org/10.5281/zenodo.3516917 Schema: https://doi.org/10.5281/zenodo.4238938 - - This dataset is licensed under a Creative Commons Attribution 4.0 International License. + +The schema used to dump this dataset mirrors the one described in the [Data Model](../data-model) +This dataset is licensed under a Creative Commons Attribution 4.0 International License. It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is a tar archive containing gz files, each with one json per line. diff --git a/docs/downloads/subgraphs.md b/docs/downloads/subgraphs.md index 53b9a04..04ac1ba 100644 --- a/docs/downloads/subgraphs.md +++ b/docs/downloads/subgraphs.md @@ -16,7 +16,8 @@ In the following, you can find the list of alternative Dumps currently available This dataset is licensed under a Creative Commons Attribution 4.0 International License. It contains metadata records of publications, research data, software and projects on the topic of Corona Virus and COVID-19. This dump is part of the activities of OpenAIRE to support the fight against COVID-19 together with the OpenAIRE COVID-19 Gateway. -The dump consists of a tar archive containing gzip files with one json per line. +The dump consists of a tar archive containing gzip files with one json per line. The model of this dump differs from the one of the whole graph. +The differences are shown in the [Alternative Model Dump](./alternativedump) ## The dump of funded products From 47394afd5eafbe07913b7037f16e2352ceec2b73 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Mon, 5 Dec 2022 15:39:25 +0100 Subject: [PATCH 4/8] [CommunityModel] added comments on subgraphs --- docs/downloads/subgraphs.md | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/docs/downloads/subgraphs.md b/docs/downloads/subgraphs.md index 04ac1ba..03fe641 100644 --- a/docs/downloads/subgraphs.md +++ b/docs/downloads/subgraphs.md @@ -28,13 +28,14 @@ The differences are shown in the [Alternative Model Dump](./alternativedump) This dataset is licensed under a Creative Commons Attribution 4.0 International License. It contains metadata records of research products (research literature, data, software, other types of research products) with funding information available in the OpenAIRE Graph. Records are grouped by funder in a dedicated archive file. Each tar archive contains -gzip files, each with one json record per line. +gzip files, each with one json record per line. The model of this dump differs from the one of the whole graph. + The differences are shown in the [Alternative Model Dump](./alternativedump) ## The dump of delta projects Dataset: https://doi.org/10.5281/zenodo.7119633 - Schema: https://doi.org/10.5281/zenodo.5799514 + Schema: https://doi.org/10.5281/zenodo.4238938 This dataset is licensed under a Creative Commons Attribution 4.0 International License. It contains the metadata records of projects collected by OpenAIRE in a given time frame. Usually one deposition of collected projects is done for each release of the OpenAIRE Graph @@ -48,7 +49,9 @@ gzip files, each with one json record per line. This dataset is licensed under a Creative Commons Attribution 4.0 International License. The dataset contains one file per community/initiative/infrastructure collaborating with OpenAIRE. Check out also their community gateways on - CONNECT. Each file is a tar archive containing gzip files with one json per line. The only communities/research initiative/infrastructure we dump are those visible to everyone. + CONNECT. Each file is a tar archive containing gzip files with one json per line. The only communities/research initiative/infrastructure we dump are those visible to everyone. + The model of this dump differs from the one of the whole graph. + The differences are shown in the [Alternative Model Dump](./alternativedump) ## The dump of ScholeXplorer From bee82cbd4c19acbac6db510b18fd55616eeb5577 Mon Sep 17 00:00:00 2001 From: Serafeim Chatzopoulos Date: Tue, 6 Dec 2022 18:43:54 +0200 Subject: [PATCH 5/8] Re-arrange downloads section --- docs/downloads/alternative-model/cfhb.md | 4 +- docs/downloads/alternative-model/context.md | 4 +- .../alternative-model/extendedresult.md | 8 ++-- docs/downloads/alternative-model/funder.md | 2 +- docs/downloads/alternative-model/project.md | 8 ++-- docs/downloads/alternative-model/validated.md | 6 +-- docs/downloads/alternativedump.md | 16 ------- docs/downloads/beginners-kit.md | 6 +++ docs/downloads/downloads.md | 42 ------------------- docs/downloads/full-graph.md | 23 ++++++++++ docs/downloads/related-datasets.md | 18 ++++++++ docs/downloads/starter-kit.md | 6 --- docs/downloads/subgraphs.md | 37 ++++++++-------- sidebars.js | 21 ++++++---- 14 files changed, 95 insertions(+), 106 deletions(-) delete mode 100644 docs/downloads/alternativedump.md create mode 100644 docs/downloads/beginners-kit.md delete mode 100644 docs/downloads/downloads.md create mode 100644 docs/downloads/full-graph.md create mode 100644 docs/downloads/related-datasets.md delete mode 100644 docs/downloads/starter-kit.md diff --git a/docs/downloads/alternative-model/cfhb.md b/docs/downloads/alternative-model/cfhb.md index 168be58..db13233 100644 --- a/docs/downloads/alternative-model/cfhb.md +++ b/docs/downloads/alternative-model/cfhb.md @@ -6,7 +6,7 @@ sidebar_position: 1 # CfHbKeyValue -Information about the sources from which the record has been collected +Information about the sources from which the record has been collected. @JsonSchema(description = "the OpenAIRE identifier of the data source") @@ -22,7 +22,7 @@ the OpenAIRE identifier of the data source ### value _Type: String • Cardinality: ONE_ -The name of the data source +The name of the data source. ```json "value":"Crossref" diff --git a/docs/downloads/alternative-model/context.md b/docs/downloads/alternative-model/context.md index 0b50ca3..2684d85 100644 --- a/docs/downloads/alternative-model/context.md +++ b/docs/downloads/alternative-model/context.md @@ -6,7 +6,7 @@ sidebar_position: 1 # Context -Information related to research initiative/community (RI/RC) related to the result +Information related to research initiative/community (RI/RC) related to the result. ### code _Type: String • Cardinality: ONE_ @@ -22,7 +22,7 @@ Code identifying the RI/RC. ### label _Type: String • Cardinality: ONE_ -Label of the RI/RC +Label of the RI/RC. ```json "label":"SDSN - Greece" diff --git a/docs/downloads/alternative-model/extendedresult.md b/docs/downloads/alternative-model/extendedresult.md index 2e90acc..d9e9b0c 100644 --- a/docs/downloads/alternative-model/extendedresult.md +++ b/docs/downloads/alternative-model/extendedresult.md @@ -17,7 +17,7 @@ It is a subclass of [Result](../../../data-model/entities/result) extended with _Type: [Project](project.md) • Cardinality: MANY_ -List of projects (i.e. grants) that (co-)funded the production of the research results +List of projects (i.e. grants) that (co-)funded the production of the research results. ```json @@ -54,7 +54,7 @@ List of projects (i.e. grants) that (co-)funded the production of the research r _Type: [Context](./context) • Cardinality: MANY_ -Reference to relevant research infrastructure, initiative or communities (RI/RC) among those collaborating with OpenAIRE. Please see https://connect.openaire.eu" that are publicly visible +Reference to relevant research infrastructure, initiative or communities (RI/RC) among those collaborating with OpenAIRE. Please see https://connect.openaire.eu that are publicly visible. ```json @@ -83,7 +83,7 @@ Reference to relevant research infrastructure, initiative or communities (RI/RC) _Type: [CfHbKeyValue](./cfhb) • Cardinality: MANY_ -Information about the sources from which the record has been collected +Information about the sources from which the record has been collected. ```json @@ -139,5 +139,3 @@ Information about the source from which the instance can be viewed or downloaded ``` - - diff --git a/docs/downloads/alternative-model/funder.md b/docs/downloads/alternative-model/funder.md index 49671c3..1da93a9 100644 --- a/docs/downloads/alternative-model/funder.md +++ b/docs/downloads/alternative-model/funder.md @@ -7,7 +7,7 @@ sidebar_position: 1 # Funder -Information about the funder funding the project +Information about the funder funding the project. ### fundingStream diff --git a/docs/downloads/alternative-model/project.md b/docs/downloads/alternative-model/project.md index b0bae91..774b487 100644 --- a/docs/downloads/alternative-model/project.md +++ b/docs/downloads/alternative-model/project.md @@ -9,7 +9,7 @@ sidebar_position: 1 # Project -The information about the projects related to the result +The information about the projects related to the result. ### id @@ -77,7 +77,7 @@ Project's title. _Type [Funder](funder.md) • Cardinality: ONE_ -Information about the funder funding the project +Information about the funder funding the project. ```json @@ -99,7 +99,7 @@ Information about the funder funding the project _Type [Provenance](../../data-model/entities/other#provenance-2) • Cardinality: ONE_ -The reason why the project is associated to the result +The reason why the project is associated to the result. ```json @@ -119,7 +119,7 @@ The reason why the project is associated to the result _Type [Validated](validated.md) • Cardinality: ONE_ -Specifies it the association between the project and the result was validated +Specifies it the association between the project and the result was validated. ```json diff --git a/docs/downloads/alternative-model/validated.md b/docs/downloads/alternative-model/validated.md index b6be470..e92b2c9 100644 --- a/docs/downloads/alternative-model/validated.md +++ b/docs/downloads/alternative-model/validated.md @@ -7,7 +7,7 @@ sidebar_position: 1 # Validated -Information about the validtion of the association between the result and the funding information +Information about the validtion of the association between the result and the funding information. ### validationDate @@ -15,7 +15,7 @@ Information about the validtion of the association between the result and the fu _Type: String • Cardinality: ONE_ -When OpenAIRE collected the association between the funding and the result from an authoritative source (i.e. Sygma) +When OpenAIRE collected the association between the funding and the result from an authoritative source (i.e. Sygma). ```json @@ -30,7 +30,7 @@ When OpenAIRE collected the association between the funding and the result from _Type: Boolean • Cardinality: ONE_ -Specifies if the validation comes from the funder +Specifies if the validation comes from the funder. ```json diff --git a/docs/downloads/alternativedump.md b/docs/downloads/alternativedump.md deleted file mode 100644 index b22f3b2..0000000 --- a/docs/downloads/alternativedump.md +++ /dev/null @@ -1,16 +0,0 @@ ---- -sidebar_position: 4 ---- - -# Dump of Research Communities/Infrastructure and products related to projects - -The dump for Research Communities/Infrastructure and products related to projects do not follow the model used to dump the whole graph. -The main differences are: - - * only research products are dumped (no relations, and entities different from results) - * the dumped results are extended with information that can be inferred in the whole dump namely: - * funding information if present - * associated research community/infrastructure - * associated data sources - -So we have just one entity which is the [extended result](alternative-model/extendedresult.md) \ No newline at end of file diff --git a/docs/downloads/beginners-kit.md b/docs/downloads/beginners-kit.md new file mode 100644 index 0000000..5bb8548 --- /dev/null +++ b/docs/downloads/beginners-kit.md @@ -0,0 +1,6 @@ +--- +sidebar_position: 2 +--- + +# Beginners kit + diff --git a/docs/downloads/downloads.md b/docs/downloads/downloads.md deleted file mode 100644 index 1bdcdcb..0000000 --- a/docs/downloads/downloads.md +++ /dev/null @@ -1,42 +0,0 @@ ---- -sidebar_position: 4 ---- - -# Bulk downloads - -You can download the full OpenAIRE Research Dump as well as its schema from the following links: - - Dataset: https://doi.org/10.5281/zenodo.3516917 - - Schema: https://doi.org/10.5281/zenodo.4238938 - -The schema used to dump this dataset mirrors the one described in the [Data Model](../data-model) -This dataset is licensed under a Creative Commons Attribution 4.0 International License. -It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is -a tar archive containing gz files, each with one json per line. - - -:::note Tip! - -For a visual and interactive overview of the JSON schema, we suggest to use a JSON schema viewer like [jsonschemaviewer](https://navneethg.github.io/jsonschemaviewer/) (you just need to copy the schema and then you can easily navigate through the nodes). - -::: - - - diff --git a/docs/downloads/full-graph.md b/docs/downloads/full-graph.md new file mode 100644 index 0000000..1aa9131 --- /dev/null +++ b/docs/downloads/full-graph.md @@ -0,0 +1,23 @@ +--- +sidebar_position: 1 +--- + +# Full graph dump + +You can download the full OpenAIRE Research Graph Dump as well as its schema from the following links: + + Dataset: https://doi.org/10.5281/zenodo.3516917 + + Schema: https://doi.org/10.5281/zenodo.4238938 + +The schema used to dump this dataset mirrors the one described in the [Data Model](../data-model). +This dataset is licensed under a Creative Commons Attribution 4.0 International License. +It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is +a tar archive containing gz files, each with one json per line. + + +:::note Tip! + +For a visual and interactive overview of the JSON schema, we suggest to use a JSON schema viewer like [jsonschemaviewer](https://navneethg.github.io/jsonschemaviewer/) (you just need to copy the schema and then you can easily navigate through the nodes). + +::: diff --git a/docs/downloads/related-datasets.md b/docs/downloads/related-datasets.md new file mode 100644 index 0000000..93f112c --- /dev/null +++ b/docs/downloads/related-datasets.md @@ -0,0 +1,18 @@ +--- +sidebar_position: 4 +--- + +# Other related datasets + +In this page, we list other related datasets; please refer to their respective schema definitions for the data model they follow. + +## The dump of ScholeXplorer + + Dataset: https://doi.org/10.5281/zenodo.6338616 + + Schema (Scholix version 3): https://doi.org/10.5281/zenodo.1120275 + + Schema (Scholix version 4): https://doi.org/10.5281/zenodo.6351557 + +This dataset is licensed under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. +The dataset contains the GZ-compressed dump of the Scholix links exposed by the OpenAIRE ScholeXplorer service. \ No newline at end of file diff --git a/docs/downloads/starter-kit.md b/docs/downloads/starter-kit.md deleted file mode 100644 index 8071d5d..0000000 --- a/docs/downloads/starter-kit.md +++ /dev/null @@ -1,6 +0,0 @@ ---- -sidebar_position: 1 ---- - -# Starter-kit - diff --git a/docs/downloads/subgraphs.md b/docs/downloads/subgraphs.md index 03fe641..59ae4da 100644 --- a/docs/downloads/subgraphs.md +++ b/docs/downloads/subgraphs.md @@ -1,11 +1,13 @@ --- -sidebar_position: 4 +sidebar_position: 3 --- -# Sub-graphs and other formats +# Sub-graph dumps + +In order to facilitate users, different dumps are available under the Zenodo community called [OpenAIRE Research Graph](https://zenodo.org/communities/openaire-research-graph). +This page lists all alternative dumps currently available. + -In order to facilitate users, different dumps and formats are available under the Zenodo community called [OpenAIRE Research Graph](https://zenodo.org/communities/openaire-research-graph). -In the following, you can find the list of alternative Dumps currently available: ## The OpenAIRE COVID-19 dump @@ -16,8 +18,7 @@ In the following, you can find the list of alternative Dumps currently available This dataset is licensed under a Creative Commons Attribution 4.0 International License. It contains metadata records of publications, research data, software and projects on the topic of Corona Virus and COVID-19. This dump is part of the activities of OpenAIRE to support the fight against COVID-19 together with the OpenAIRE COVID-19 Gateway. -The dump consists of a tar archive containing gzip files with one json per line. The model of this dump differs from the one of the whole graph. -The differences are shown in the [Alternative Model Dump](./alternativedump) +The dump consists of a tar archive containing gzip files with one json per line. Please refer [here](#alternative-sub-graph-data-model) for the data model of this dump. ## The dump of funded products @@ -29,7 +30,7 @@ The differences are shown in the [Alternative Model Dump](./alternativedump) It contains metadata records of research products (research literature, data, software, other types of research products) with funding information available in the OpenAIRE Graph. Records are grouped by funder in a dedicated archive file. Each tar archive contains gzip files, each with one json record per line. The model of this dump differs from the one of the whole graph. - The differences are shown in the [Alternative Model Dump](./alternativedump) +Please refer [here](#alternative-sub-graph-data-model) for the data model of this dump. ## The dump of delta projects @@ -51,16 +52,18 @@ gzip files, each with one json record per line. The model of this dump differs f The dataset contains one file per community/initiative/infrastructure collaborating with OpenAIRE. Check out also their community gateways on CONNECT. Each file is a tar archive containing gzip files with one json per line. The only communities/research initiative/infrastructure we dump are those visible to everyone. The model of this dump differs from the one of the whole graph. - The differences are shown in the [Alternative Model Dump](./alternativedump) +Please refer [here](#alternative-sub-graph-data-model) for the data model of this dump. -## The dump of ScholeXplorer + --- - Dataset: https://doi.org/10.5281/zenodo.6338616 - - Schema (Scholix version 3): https://doi.org/10.5281/zenodo.1120275 - - Schema (Scholix version 4): https://doi.org/10.5281/zenodo.6351557 + ## Alternative sub-graph data model - This dataset is licensed under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. -The dataset contains the GZ-compressed dump of the Scholix links exposed by the OpenAIRE ScholeXplorer service. - + It should be noted that the dumps for research communities, infrastructures, and products related to projects do not strictly follow the main data model of the OpenAIRE Graph. In particular, they differ in the following: + + * only research products are dumped (no relations, and entities different from results) + * the dumped results are extended with information that can be inferred in the whole dump namely: + * funding information if present + * associated research community/infrastructure + * associated data sources + +So they have just one entity type, that is the [Extended Result](alternative-model/extendedresult.md). diff --git a/sidebars.js b/sidebars.js index 4ac07e2..aadca39 100644 --- a/sidebars.js +++ b/sidebars.js @@ -51,14 +51,19 @@ const sidebars = { href: "https://graph.openaire.eu/develop/overview.html" }, { - type: 'category', - label: 'Bulk downloads', - link: {type: 'doc', id: 'downloads/downloads'}, - items: [ - { type: 'doc', id: 'downloads/starter-kit' }, - { type: 'doc', id: 'downloads/subgraphs' }, - ] - }, + type: 'category', + label: "Downloads", + link: { + type: 'generated-index', + description: 'All resources, available for download, are listed below.' + }, + items: [ + { type: 'doc', id: 'downloads/full-graph'}, + { type: 'doc', id: 'downloads/beginners-kit' }, + { type: 'doc', id: 'downloads/subgraphs' }, + { type: 'doc', id: 'downloads/related-datasets' }, + ] + }, { type: 'category', label: "Data provision", From 6c283bde25df33865109c2bfeff2e1481465698f Mon Sep 17 00:00:00 2001 From: Serafeim Chatzopoulos Date: Tue, 6 Dec 2022 18:52:35 +0200 Subject: [PATCH 6/8] Minor fix on alternative sub-graph data model description --- docs/downloads/subgraphs.md | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/docs/downloads/subgraphs.md b/docs/downloads/subgraphs.md index 59ae4da..cf5aeb4 100644 --- a/docs/downloads/subgraphs.md +++ b/docs/downloads/subgraphs.md @@ -8,7 +8,6 @@ In order to facilitate users, different dumps are available under the Zenodo com This page lists all alternative dumps currently available. - ## The OpenAIRE COVID-19 dump Dataset: https://doi.org/10.5281/zenodo.6638745 @@ -18,7 +17,7 @@ This page lists all alternative dumps currently available. This dataset is licensed under a Creative Commons Attribution 4.0 International License. It contains metadata records of publications, research data, software and projects on the topic of Corona Virus and COVID-19. This dump is part of the activities of OpenAIRE to support the fight against COVID-19 together with the OpenAIRE COVID-19 Gateway. -The dump consists of a tar archive containing gzip files with one json per line. Please refer [here](#alternative-sub-graph-data-model) for the data model of this dump. +The dump consists of a tar archive containing gzip files with one json per line. Please refer [here](#alternative-sub-graph-data-model) for details on the data model of this dump. ## The dump of funded products @@ -30,7 +29,7 @@ The dump consists of a tar archive containing gzip files with one json per line. It contains metadata records of research products (research literature, data, software, other types of research products) with funding information available in the OpenAIRE Graph. Records are grouped by funder in a dedicated archive file. Each tar archive contains gzip files, each with one json record per line. The model of this dump differs from the one of the whole graph. -Please refer [here](#alternative-sub-graph-data-model) for the data model of this dump. +Please refer [here](#alternative-sub-graph-data-model) for details on the data model of this dump. ## The dump of delta projects @@ -52,7 +51,7 @@ Please refer [here](#alternative-sub-graph-data-model) for the data model of thi The dataset contains one file per community/initiative/infrastructure collaborating with OpenAIRE. Check out also their community gateways on CONNECT. Each file is a tar archive containing gzip files with one json per line. The only communities/research initiative/infrastructure we dump are those visible to everyone. The model of this dump differs from the one of the whole graph. -Please refer [here](#alternative-sub-graph-data-model) for the data model of this dump. +Please refer [here](#alternative-sub-graph-data-model) for details on the data model of this dump. --- From b4cd25b8db104722e3e8ad56146ac3361eff112f Mon Sep 17 00:00:00 2001 From: Serafeim Chatzopoulos Date: Thu, 8 Dec 2022 19:40:12 +0200 Subject: [PATCH 7/8] Add how to cite & badge in download page --- docs/assets/openaire-red-badge.png | Bin 0 -> 24201 bytes docs/downloads/full-graph.md | 16 +++++++-- .../bibtex/OpenAIRE_Research_Graph_dump.bib | 33 ++++++++++++++++++ 3 files changed, 47 insertions(+), 2 deletions(-) create mode 100644 docs/assets/openaire-red-badge.png create mode 100644 static/bibtex/OpenAIRE_Research_Graph_dump.bib diff --git a/docs/assets/openaire-red-badge.png b/docs/assets/openaire-red-badge.png new file mode 100644 index 0000000000000000000000000000000000000000..e346dca6b65d0b7274d02c8ddcf32fe59a6e7d49 GIT 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Commons Attribution 4.0 International It is composed of several files so that you can download the parts you are interested into. The files are named after the entity they store (i.e. publication, dataset). Each file is at most 10GB and it is a tar archive containing gz files, each with one json per line. +## How to acknowledge this work -:::note Tip! +Open Science services are open and transparent and survive thanks to your active support and to the visibility and reward they gather. If you use one of the [OpenAIRE Graph dumps](https://doi.org/10.5281/zenodo.3516917) for your research, please provide a proper citation following the recommendation that you find on the dump's Zenodo page or as provided below. -For a visual and interactive overview of the JSON schema, we suggest to use a JSON schema viewer like [jsonschemaviewer](https://navneethg.github.io/jsonschemaviewer/) (you just need to copy the schema and then you can easily navigate through the nodes). +:::note How to cite +Manghi P., Atzori C., Bardi A., Baglioni M., Schirrwagen J., Dimitropoulos H., La Bruzzo S., Foufoulas I., Mannocci A., Horst M., Czerniak A., Kiatropoulou K., Kokogiannaki A., De Bonis M., Artini M., Ottonello E., Lempesis A., Ioannidis A., Manola N., Principe P. (2022). "OpenAIRE Research Graph Dump", *Dataset*, Zenodo. [doi:10.5281/zenodo.3516917](https://doi.org/10.5281/zenodo.3516917) ([BibTex](/bibtex/OpenAIRE_Research_Graph_dump.bib)) ::: + +Please also consider citing [other relevant research products](/publications#relevant-research-products) that can be of interest. + +Also consider adding one of the following badges to your service with the appropriate link to [our website](https://graph.openaire.eu): + +

+ + Openaire badge + +

diff --git a/static/bibtex/OpenAIRE_Research_Graph_dump.bib b/static/bibtex/OpenAIRE_Research_Graph_dump.bib new file mode 100644 index 0000000..2bd491d --- /dev/null +++ b/static/bibtex/OpenAIRE_Research_Graph_dump.bib @@ -0,0 +1,33 @@ +@dataset{manghi_paolo_2022_6616871, + author = {Manghi, Paolo and + Atzori, Claudio and + Bardi, Alessia and + Baglioni, Miriam and + Schirrwagen, Jochen and + Dimitropoulos, Harry and + La Bruzzo, Sandro and + Foufoulas, Ioannis and + Mannocci, Andrea and + Horst, Marek and + Czerniak, Andreas and + Kiatropoulou, Katerina and + Kokogiannaki, Argiro and + De Bonis, Michele and + Artini, Michele and + Ottonello, Enrico and + Lempesis, Antonis and + Ioannidis, Alexandros and + Manola, Natalia and + Principe, Pedro}, + title = {OpenAIRE Research Graph Dump}, + month = jun, + year = 2022, + note = {{A new version of this dataset is published every 6 + months. The content available on the OpenAIRE + EXPLORE and CONNECT portals might be more up-to- + date with respect to the data you find here.}}, + publisher = {Zenodo}, + version = {4.1}, + doi = {10.5281/zenodo.6616871}, + url = {https://doi.org/10.5281/zenodo.6616871} +} \ No newline at end of file From 83f28816b855f854fce108854cab987355ffe02c Mon Sep 17 00:00:00 2001 From: Serafeim Chatzopoulos Date: Thu, 8 Dec 2022 20:26:24 +0200 Subject: [PATCH 8/8] Fix link to downloads --- docs/data-model/data-model.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/data-model/data-model.md b/docs/data-model/data-model.md index ae9d453..50a6a52 100644 --- a/docs/data-model/data-model.md +++ b/docs/data-model/data-model.md @@ -2,7 +2,7 @@ The OpenAIRE Graph comprises several types of [entities](../category/entities) and [relationships](./relationships) among them. -The latest version of the JSON schema can be found on [Bulk downloads](../download). +The latest version of the JSON schema can be found on the [Downloads](../downloads/full-graph) section.

Data model