105 lines
3.1 KiB
Java
105 lines
3.1 KiB
Java
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package eu.dnetlib.dhp.actionmanager.fosnodoi;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import org.apache.commons.io.FileUtils;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.LocalFileSystem;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.*;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.actionmanager.createunresolvedentities.GetFOSSparkJob;
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import eu.dnetlib.dhp.actionmanager.createunresolvedentities.PrepareTest;
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import eu.dnetlib.dhp.actionmanager.createunresolvedentities.ProduceTest;
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import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.FOSDataModel;
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/**
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* @author miriam.baglioni
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* @Date 13/02/23
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*/
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public class GetFosTest {
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private static final Logger log = LoggerFactory.getLogger(ProduceTest.class);
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private static Path workingDir;
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private static SparkSession spark;
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private static LocalFileSystem fs;
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(PrepareTest.class.getSimpleName());
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fs = FileSystem.getLocal(new Configuration());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(ProduceTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(PrepareTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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@Disabled
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void test3() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/actionmanager/fosnodoi/fosnodoi.csv")
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.getPath();
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final String outputPath = workingDir.toString() + "/fos.json";
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GetFOSSparkJob
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.main(
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new String[] {
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"--isSparkSessionManaged", Boolean.FALSE.toString(),
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"--sourcePath", sourcePath,
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"-outputPath", outputPath,
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"-delimiter", ","
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<FOSDataModel> tmp = sc
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.textFile(outputPath)
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.map(item -> OBJECT_MAPPER.readValue(item, FOSDataModel.class));
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tmp.foreach(t -> Assertions.assertTrue(t.getOaid() != null));
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tmp.foreach(t -> Assertions.assertTrue(t.getLevel1() != null));
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tmp.foreach(t -> Assertions.assertTrue(t.getLevel2() != null));
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tmp.foreach(t -> Assertions.assertTrue(t.getLevel3() != null));
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tmp.foreach(t -> System.out.println(new ObjectMapper().writeValueAsString(t)));
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}
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}
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