37 lines
934 B
Scala
37 lines
934 B
Scala
package eu.dnetlib.dhp.sx.bio
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import eu.dnetlib.dhp.schema.common.ModelConstants
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import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils
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import eu.dnetlib.dhp.schema.oaf.{DataInfo, Dataset, Oaf}
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import org.json4s.DefaultFormats
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import org.json4s.jackson.JsonMethods.parse
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import scala.collection.JavaConverters._
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object PDBToOAF {
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val dataInfo: DataInfo = OafMapperUtils.dataInfo(false, null, false, false, ModelConstants.PROVENANCE_ACTION_SET_QUALIFIER, "0.9")
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def convert(input:String):List[Oaf]= {
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implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
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lazy val json = parse(input)
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val pdb = (json \ "pdb").extract[String]
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if (pdb.isEmpty)
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return List()
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val d = new Dataset
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d.setPid(
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List(
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OafMapperUtils.structuredProperty(pdb, "pdb", "pdb", ModelConstants.DNET_PID_TYPES, ModelConstants.DNET_PID_TYPES,dataInfo)
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).asJava
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)
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List(d)
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}
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}
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