dnet-hadoop/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/XmlIndexingJob.java

package eu.dnetlib.dhp.oa.provision;

import com.lucidworks.spark.util.SolrSupport;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.oa.provision.model.SerializableSolrInputDocument;
import eu.dnetlib.dhp.oa.provision.utils.ISLookupClient;
import eu.dnetlib.dhp.oa.provision.utils.StreamingInputDocumentFactory;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.dhp.utils.saxon.SaxonTransformerFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.hadoop.io.Text;
import org.apache.solr.common.SolrInputDocument;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerException;
import javax.xml.transform.stream.StreamResult;
import javax.xml.transform.stream.StreamSource;
import java.io.IOException;
import java.io.StringReader;
import java.io.StringWriter;
import java.text.SimpleDateFormat;
import java.util.Date;
import java.util.Optional;

import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;

public class XmlIndexingJob {

	private static final Logger log = LoggerFactory.getLogger(XmlIndexingJob.class);

	private static final Integer DEFAULT_BATCH_SIZE = 1000;

	protected static final String DATE_FORMAT = "yyyy-MM-dd'T'hh:mm:ss'Z'";

	private String inputPath;

	private String format;

	private int batchSize;

	private String outputPath;

	private SparkSession spark;

	public static void main(String[] args) throws Exception {

		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
			IOUtils
				.toString(
					XmlIndexingJob.class
						.getResourceAsStream(
							"/eu/dnetlib/dhp/oa/provision/input_params_update_index.json")));
		parser.parseArgument(args);

		Boolean isSparkSessionManaged = Optional
			.ofNullable(parser.get("isSparkSessionManaged"))
			.map(Boolean::valueOf)
			.orElse(Boolean.TRUE);
		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);

		final String inputPath = parser.get("inputPath");
		log.info("inputPath: {}", inputPath);

		final String format = parser.get("format");
		log.info("format: {}", format);

		final String outputPath = Optional.ofNullable(parser.get("outputPath"))
				.orElse(null);
		log.info("outputPath: {}", outputPath);

		final Integer batchSize = parser.getObjectMap().containsKey("batchSize")
			? Integer.valueOf(parser.get("batchSize"))
			: DEFAULT_BATCH_SIZE;
		log.info("batchSize: {}", batchSize);

		final SparkConf conf = new SparkConf();
		conf.registerKryoClasses(new Class[] { SerializableSolrInputDocument.class });

		runWithSparkSession(
			conf,
			isSparkSessionManaged,
			spark -> {
				final String isLookupUrl = parser.get("isLookupUrl");
				log.info("isLookupUrl: {}", isLookupUrl);
				final ISLookupClient isLookup = new ISLookupClient(ISLookupClientFactory.getLookUpService(isLookupUrl));
				new XmlIndexingJob(spark, inputPath, format, batchSize, outputPath).run(isLookup);
			});
	}

	public XmlIndexingJob(SparkSession spark, String inputPath, String format, Integer batchSize, String outputPath) {
		this.spark = spark;
		this.inputPath = inputPath;
		this.format = format;
		this.batchSize = batchSize;
		this.outputPath = outputPath;
	}

	public void run(ISLookupClient isLookup) throws ISLookUpException, TransformerException {
		final String fields = isLookup.getLayoutSource(format);
		log.info("fields: {}", fields);

		final String xslt = isLookup.getLayoutTransformer();

		final String dsId = isLookup.getDsId(format);
		log.info("dsId: {}", dsId);

		final String zkHost = isLookup.getZkHost();
		log.info("zkHost: {}", zkHost);

		final String version = getRecordDatestamp();

		final String indexRecordXslt = getLayoutTransformer(format, fields, xslt);
		log.info("indexRecordTransformer {}", indexRecordXslt);

		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());

		JavaRDD<SolrInputDocument> docs = sc
				.sequenceFile(inputPath, Text.class, Text.class)
				.map(t -> t._2().toString())
				.map(s -> toIndexRecord(SaxonTransformerFactory.newInstance(indexRecordXslt), s))
				.map(s -> new StreamingInputDocumentFactory(version, dsId).parseDocument(s));

		if (StringUtils.isNotBlank(outputPath)) {
			spark.createDataset(
					docs.map(s -> new SerializableSolrInputDocument(s)).rdd(),
					Encoders.kryo(SerializableSolrInputDocument.class))
				.write()
				.mode(SaveMode.Overwrite)
				.parquet(outputPath);
		} else {
			final String collection = ProvisionConstants.getCollectionName(format);
			SolrSupport.indexDocs(zkHost, collection, batchSize, docs.rdd());
		}
	}

	protected static String toIndexRecord(Transformer tr, final String record) {
		final StreamResult res = new StreamResult(new StringWriter());
		try {
			tr.transform(new StreamSource(new StringReader(record)), res);
			return res.getWriter().toString();
		} catch (Throwable e) {
			log.error("XPathException on record: \n {}", record, e);
			throw new IllegalArgumentException(e);
		}
	}

	/**
	 * Creates the XSLT responsible for building the index xml records.
	 *
	 * @param format Metadata format name (DMF|TMF)
	 * @param xslt xslt for building the index record transformer
	 * @param fields the list of fields
	 * @return the javax.xml.transform.Transformer
	 * @throws ISLookUpException could happen
	 * @throws IOException could happen
	 * @throws TransformerException could happen
	 */
	protected static String getLayoutTransformer(String format, String fields, String xslt)
		throws TransformerException {

		final Transformer layoutTransformer = SaxonTransformerFactory.newInstance(xslt);
		final StreamResult layoutToXsltXslt = new StreamResult(new StringWriter());

		layoutTransformer.setParameter("format", format);
		layoutTransformer.transform(new StreamSource(new StringReader(fields)), layoutToXsltXslt);

		return layoutToXsltXslt.getWriter().toString();
	}

	/**
	 * method return a solr-compatible string representation of a date, used to mark all records as indexed today
	 *
	 * @return the parsed date
	 */
	public static String getRecordDatestamp() {
		return new SimpleDateFormat(DATE_FORMAT).format(new Date());
	}

}