1350 lines
131 KiB
XML
1350 lines
131 KiB
XML
<RESOURCE_PROFILE>
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<HEADER>
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<RESOURCE_IDENTIFIER value="4801c33c-66ca-4ab6-af64-aa812194ec61_V29ya2Zsb3dEU1Jlc291cmNlcy9Xb3JrZmxvd0RTUmVzb3VyY2VUeXBl"/>
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<RESOURCE_TYPE value="WorkflowDSResourceType"/>
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<RESOURCE_KIND value="WorkflowDSResources"/>
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<RESOURCE_URI value=""/>
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<DATE_OF_CREATION value="2022-01-11T20:04:48+00:00"/>
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</HEADER>
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<BODY>
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<WORKFLOW_NAME>Graph processing [EXPERIMENT]</WORKFLOW_NAME>
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<WORKFLOW_TYPE>Data Provision</WORKFLOW_TYPE>
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<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
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<CONFIGURATION start="manual">
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<NODE isStart="true" name="setUnresolvedEntityPath" type="SetEnvParameter">
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<DESCRIPTION>set the path of unresolved entities</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">unresolvedEntityPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/unresolved_BETA/content</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setNsPrefixBlacklistForBETA" type="SetEnvParameter">
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<DESCRIPTION>set blacklist of funder nsPrefixes from the beta aggregator</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">nsPrefixBlacklist_BETA</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">gsrt________,rcuk________</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setNsPrefixBlacklistForPROD" type="SetEnvParameter">
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<DESCRIPTION>set blacklist of funder nsPrefixes from the production aggregator</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">nsPrefixBlacklist_PROD</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">gsrt________,rcuk________,fct_________,nwo_________</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setIdMappingPath" type="SetEnvParameter">
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<DESCRIPTION>set the path of the map defining the relations id mappings</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">idMappingPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/data/maps/fct_map.json</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setIterationNumbers" type="SetEnvParameter">
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<DESCRIPTION>set the number of iteration in affiliation propagation</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">iterations</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">1</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setMergedGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the MERGED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">mergedGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/01_graph_merged</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setRawGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the RAW graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">rawGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/02_graph_raw</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setCleanedFirstGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the the consistent graph cleaned</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedFirstGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/03_graph_cleaned</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setResolvedGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">resolvedGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/04_graph_resolved</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setGroupedGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the GROUPED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">groupedGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/05_graph_grouped</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setInferredGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the INFERRED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">inferredGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/06_graph_inferred</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/07_graph_dedup</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setConsistentGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/08_graph_consistent</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setOrcidGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/09_graph_orcid</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setBulkTaggingGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/10_graph_bulktagging</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setAffiliationGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/11_graph_affiliation</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setAffiliationSemRelGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the AFFILIATION from SEMATIC RELATION graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationSemRelGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/12_graph_affiliationsr</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setCommunityOrganizationGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/13_graph_community_organization</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setFundingGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/14_graph_funding</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setCommunitySemRelGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/15_graph_community_sem_rel</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setCountryGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/16_graph_country</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setCleanedGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/17_graph_cleaned</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setBlacklistedGraphPath" type="SetEnvParameter">
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<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">blacklistedGraphPath</PARAM>
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<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/18_graph_blacklisted</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setBulkTaggingPathMap" type="SetEnvParameter">
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<DESCRIPTION>Set the map of paths for the Bulk Tagging</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingPathMap</PARAM>
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<PARAM managedBy="system" name="parameterValue" required="true" type="string">{"author" : "$['author'][*]['fullname']", "title" : "$['title'][*]['value']", "orcid" : "$['author'][*]['pid'][*][?(@['key']=='ORCID')]['value']", "contributor" : "$['contributor'][*]['value']", "description" : "$['description'][*]['value']"}</PARAM>
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</PARAMETERS>
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<ARCS>
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<ARC to="waitConfig"/>
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</ARCS>
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</NODE>
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<NODE isStart="true" name="setPropagationOrganizationCommunityMap" type="SetEnvParameter">
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<DESCRIPTION>Set the map of associations organization, community list for the propagation of community to result through organization</DESCRIPTION>
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<PARAMETERS>
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<PARAM managedBy="system" name="parameterName" required="true" type="string">propagationOrganizationCommunityMap</PARAM>
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<PARAM managedBy="system" name="parameterValue" required="true" type="string">{"20|corda__h2020::3fb05a9524c3f790391261347852f638":["mes","euromarine"], "20|corda__h2020::e8dbe14cca9bf6fce09d468872f813f8":["mes","euromarine"], "20|snsf________::9b253f265e3bef5cae6d881fdf61aceb":["mes","euromarine"],"20|rcuk________::e054eea0a47665af8c3656b5785ccf76":["mes","euromarine"],"20|corda__h2020::edc18d67c9b11fb616ca9f6e1db1b151":["mes","euromarine"],"20|rcuk________::d5736d9da90521ddcdc7828a05a85e9a":["mes","euromarine"],"20|corda__h2020::f5d418d3aa1cf817ddefcc3fdc039f27":["mes","euromarine"],"20|snsf________::8fa091f8f25a846779acb4ea97b50aef":["mes","euromarine"],"20|corda__h2020::81e020977211c2c40fae2e1a50bffd71":["mes","euromarine"],"20|corda_______::81e020977211c2c40fae2e1a50bffd71":["mes","euromarine"],"20|snsf________::31d0a100e54e3cdb3c6f52d91e638c78":["mes","euromarine"],"20|corda__h2020::ea379ef91b8cc86f9ac5edc4169292db":["mes","euromarine"],"20|corda__h2020::f75ee2ee48e5cb0ec8c8d30aaa8fef70":["mes","euromarine"],"20|rcuk________::e16010089551a1a9182a94604fc0ea59":["mes","euromarine"],"20|corda__h2020::38531a2cce7c5c347ffc439b07c1f43b":["mes","euromarine"],"20|corda_______::38531a2cce7c5c347ffc439b07c1f43b":["mes","euromarine"],"20|grid________::b2cbbf5eadbbf87d534b022bad3191d7":["mes","euromarine"],"20|snsf________::74730ef1439d7f7636a8be58a6b471b8":["mes","euromarine"],"20|nsf_________::ad72e19043a5a467e35f9b444d11563e":["mes","euromarine"],"20|rcuk________::0fc3e92500290902a2d38ec2445e74c3":["mes","euromarine"],"20|grid________::ad2c29905da0eb3c06b3fa80cacd89ea":["mes","euromarine"],"20|corda__h2020::30b53e4d63d3724f00acb9cbaca40860":["mes","euromarine"],"20|corda__h2020::f60f84bee14ad93f0db0e49af1d5c317":["mes","euromarine"], "20|corda__h2020::7bf251ac3765b5e89d82270a1763d09f":["mes","euromarine"], "20|corda__h2020::65531bd11be9935948c7f2f4db1c1832":["mes","euromarine"], "20|corda__h2020::e0e98f86bbc76638bbb72a8fe2302946":["mes","euromarine"], "20|snsf________::3eb43582ac27601459a8d8b3e195724b":["mes","euromarine"], "20|corda__h2020::af2481dab65d06c8ea0ae02b5517b9b6":["mes","euromarine"], "20|corda__h2020::c19d05cfde69a50d3ebc89bd0ee49929":["mes","euromarine"], "20|corda__h2020::af0bfd9fc09f80d9488f56d71a9832f0":["mes","euromarine"], "20|rcuk________::f33c02afb0dc66c49d0ed97ca5dd5cb0":["beopen"],
|
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"20|grid________::a867f78acdc5041b34acfe4f9a349157":["beopen"], "20|grid________::7bb116a1a9f95ab812bf9d2dea2be1ff":["beopen"], "20|corda__h2020::6ab0e0739dbe625b99a2ae45842164ad":["beopen"], "20|corda__h2020::8ba50792bc5f4d51d79fca47d860c602":["beopen"], "20|corda_______::8ba50792bc5f4d51d79fca47d860c602":["beopen"], "20|corda__h2020::e70e9114979e963eef24666657b807c3":["beopen"], "20|corda_______::e70e9114979e963eef24666657b807c3":["beopen"], "20|corda_______::15911e01e9744d57205825d77c218737":["beopen"], "20|opendoar____::056a41e24e2a9a67215e87bbee6a80ab":["beopen"], "20|opendoar____::7f67f2e6c6fbb0628f8160fcd3d92ae3":["beopen"], "20|grid________::a8ecfd7c084e561168bcbe6bf0daf3e3":["beopen"], "20|corda_______::7bbe6cc5d8ec1864739a04b0d020c9e9":["beopen"], "20|corda_______::3ff558e30c2e434d688539548300b050":["beopen"], "20|corda__h2020::5ffee5b3b83b33a8cf0e046877bd3a39":["beopen"], "20|corda__h2020::5187217e2e806a6df3579c46f82401bc":["beopen"], "20|grid________::5fa7e2709bcd945e26bfa18689adeec1":["beopen"], "20|corda_______::d8696683c53027438031a96ad27c3c07":["beopen"], "20|corda__h2020::d8696683c53027438031a96ad27c3c07":["beopen"], "20|rcuk________::23a79ebdfa59790864e4a485881568c1":["beopen"], "20|corda__h2020::b76cf8fe49590a966953c37e18608af9":["beopen"], "20|grid________::d2f0204126ee709244a488a4cd3b91c2":["beopen"], "20|corda__h2020::05aba9d2ed17533d15221e5655ac11e6":["beopen"], "20|grid________::802401579481dc32062bdee69f5e6a34":["beopen"], "20|corda__h2020::3f6d9d54cac975a517ba6b252c81582d":["beopen"]}
|
|
</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isStart="true" name="setDedupConfig" type="SetEnvParameter">
|
|
<DESCRIPTION>Set the dedup orchestrator name</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupConfig</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">dedup-similarity-result-decisiontree-v2</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isStart="true" name="actionSetsRaw" type="SetEnvParameter">
|
|
<DESCRIPTION>declares the ActionSet ids to promote in the RAW graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">actionSetIdsRawGraph</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">doiboost,orcidworks-no-doi,opencitations,h2020classification</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isStart="true" name="actionSetsIIS" type="SetEnvParameter">
|
|
<DESCRIPTION>declares the ActionSet ids to promote in the INFERRED graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">actionSetIdsIISGraph</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">iis-researchinitiative,iis-document-citations,iis-document-citations-relations,iis-document-affiliation,iis-document-classes,iis-document-similarities,iis-referenced-datasets-main,iis-referenced-projects-main,iis-referenceextraction-pdb,document_software_url,iis-extracted-metadata,iis-communities,iis-referenced-patents,iis-covid-19,iis-entities-software,iis-entities-patent</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isStart="true" name="setIsLookUpUrl" type="SetEnvParameter">
|
|
<DESCRIPTION>Set the IS lookup service address</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">isLookUpUrl</PARAM>
|
|
<PARAM managedBy="system" name="parameterValue" required="true" type="string">http://beta.services.openaire.eu:8280/is/services/isLookUp?wsdl</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isJoin="true" name="waitConfig">
|
|
<DESCRIPTION>wait configurations</DESCRIPTION>
|
|
<PARAMETERS/>
|
|
<ARCS>
|
|
<ARC to="reuseODFClaims_PROD"/>
|
|
<ARC to="reuseODFClaims_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseODFClaims_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached ODF claims from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseODFClaims_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseODF_hdfs_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseODF_hdfs_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached ODF records on HDFS from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseODFhdfs_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseOAFClaims_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseOAFClaims_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OAF claims from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseOAFClaims_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseOAF_hdfs_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseOAF_hdfs_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OAF records on HDFS from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseOAFhdfs_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseDB_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseDB_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached DB content from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseDB_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseDBOpenorgs_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseDBOpenorgs_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OpenOrgs content from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseDBOpenorgs_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseODF_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseODF_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached ODF content from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseODF_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseOAF_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseOAF_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OAF content from the PROD aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseOAF_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="patchRelations_PROD"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="patchRelations_PROD" type="SetEnvParameter">
|
|
<DESCRIPTION>should apply the relations id patching based on the provided idMapping on PROD?</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">shouldPatchRelations_PROD</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">false</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="contentPathProd"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="contentPathProd" type="SetEnvParameter">
|
|
<DESCRIPTION>set the PROD aggregator content path</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">prodContentPath</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_aggregator_for_beta</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="prodAggregatorGraphPath"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="prodAggregatorGraphPath" type="SetEnvParameter">
|
|
<DESCRIPTION>Set the path containing the PROD AGGREGATOR graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">prodAggregatorGraphPath</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/00_prod_graph_aggregator</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig2"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseODFClaims_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached ODF claims from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseODFClaims_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseODF_hdfs_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseODF_hdfs_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached ODF records on HDFS from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseODFhdfs_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseOAFClaims_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseOAFClaims_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OAF claims from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseOAFClaims_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseOAF_hdfs_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseOAF_hdfs_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OAF records on HDFS from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseOAFhdfs_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseDB_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseDB_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached DB content from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseDB_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseDBOpenorgs_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseDBOpenorgs_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OpenOrgs content from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseDBOpenorgs_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseODF_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseODF_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached ODF content from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseODF_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="reuseOAF_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="reuseOAF_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>reuse cached OAF content from the BETA aggregation system</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseOAF_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="patchRelations_BETA"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="patchRelations_BETA" type="SetEnvParameter">
|
|
<DESCRIPTION>should apply the relations id patching based on the provided idMapping on BETA?</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">shouldPatchRelations_BETA</PARAM>
|
|
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="contentPathBeta"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="contentPathBeta" type="SetEnvParameter">
|
|
<DESCRIPTION>set the BETA aggregator content path</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">betaContentPath</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_aggregator</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="betaAggregatorGraphPath"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="betaAggregatorGraphPath" type="SetEnvParameter">
|
|
<DESCRIPTION>Set the path containing the BETA AGGREGATOR graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="parameterName" required="true" type="string">betaAggregatorGraphPath</PARAM>
|
|
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_experiment/graph/00_beta_graph_aggregator</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitConfig2"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isJoin="true" name="waitConfig2">
|
|
<DESCRIPTION>wait configurations</DESCRIPTION>
|
|
<PARAMETERS/>
|
|
<ARCS>
|
|
<ARC to="betaAggregatorGraph"/>
|
|
<ARC to="prodAggregatorGraph"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="betaAggregatorGraph" type="SubmitHadoopJob">
|
|
<DESCRIPTION>create the BETA AGGREGATOR graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphOutputPath' : 'betaAggregatorGraphPath',
|
|
'isLookupUrl' : 'isLookUpUrl',
|
|
'reuseODFClaims' : 'reuseODFClaims_BETA',
|
|
'reuseOAFClaims' : 'reuseOAFClaims_BETA',
|
|
'reuseDB' : 'reuseDB_BETA',
|
|
'reuseDBOpenorgs' : 'reuseDBOpenorgs_BETA',
|
|
'reuseODF' : 'reuseODF_BETA',
|
|
'reuseODF_hdfs' : 'reuseODFhdfs_BETA',
|
|
'reuseOAF' : 'reuseOAF_BETA',
|
|
'reuseOAF_hdfs' : 'reuseOAFhdfs_BETA',
|
|
'contentPath' : 'betaContentPath',
|
|
'nsPrefixBlacklist' : 'nsPrefixBlacklist_BETA',
|
|
'shouldPatchRelations' : 'shouldPatchRelations_BETA',
|
|
'idMappingPath' : 'idMappingPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/raw_all/oozie_app',
|
|
'mongoURL' : 'mongodb://beta.services.openaire.eu',
|
|
'mongoDb' : 'mdstore',
|
|
'mdstoreManagerUrl' : 'https://beta.services.openaire.eu/mdstoremanager',
|
|
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
|
|
'postgresUser' : '',
|
|
'postgresPassword' : '',
|
|
'postgresOpenOrgsURL' : 'jdbc:postgresql://10.19.65.40:5432/oa_organizations',
|
|
'postgresOpenOrgsUser' : '',
|
|
'postgresOpenOrgsPassword' : '',
|
|
'shouldHashId' : 'true',
|
|
'importOpenorgs' : 'false',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/beta_aggregator'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitAggregatorGraph"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="prodAggregatorGraph" type="SubmitHadoopJob">
|
|
<DESCRIPTION>create the PROD AGGREGATOR graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphOutputPath' : 'prodAggregatorGraphPath',
|
|
'isLookupUrl' : 'isLookUpUrl',
|
|
'reuseODFClaims' : 'reuseODFClaims_PROD',
|
|
'reuseOAFClaims' : 'reuseOAFClaims_PROD',
|
|
'reuseDB' : 'reuseDB_PROD',
|
|
'reuseDBOpenorgs' : 'reuseDBOpenorgs_PROD',
|
|
'reuseODF' : 'reuseODF_PROD',
|
|
'reuseODF_hdfs' : 'reuseODFhdfs_PROD',
|
|
'reuseOAF' : 'reuseOAF_PROD',
|
|
'reuseOAF_hdfs' : 'reuseOAFhdfs_PROD',
|
|
'contentPath' : 'prodContentPath',
|
|
'nsPrefixBlacklist' : 'nsPrefixBlacklist_PROD',
|
|
'shouldPatchRelations' : 'shouldPatchRelations_PROD',
|
|
'idMappingPath' : 'idMappingPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/raw_all/oozie_app',
|
|
'mongoURL' : 'mongodb://services.openaire.eu',
|
|
'mongoDb' : 'mdstore',
|
|
'mdstoreManagerUrl' : 'https://services.openaire.eu/mdstoremanager',
|
|
'postgresURL' : 'jdbc:postgresql://postgresql.services.openaire.eu:5432/dnet_openaireplus',
|
|
'postgresUser' : '',
|
|
'postgresPassword' : '',
|
|
'postgresOpenOrgsURL' : 'jdbc:postgresql://10.19.65.39:5432/oa_organizations',
|
|
'postgresOpenOrgsUser' : '',
|
|
'postgresOpenOrgsPassword' : '',
|
|
'shouldHashId' : 'true',
|
|
'importOpenorgs' : 'true',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/prod_aggregator'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="waitAggregatorGraph"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE isJoin="true" name="waitAggregatorGraph">
|
|
<DESCRIPTION>wait configurations</DESCRIPTION>
|
|
<PARAMETERS/>
|
|
<ARCS>
|
|
<ARC to="mergeAggregatorGraphs"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="mergeAggregatorGraphs" type="SubmitHadoopJob">
|
|
<DESCRIPTION>create the AGGREGATOR graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'betaInputGraphPath' : 'betaAggregatorGraphPath',
|
|
'prodInputGraphPath' : 'prodAggregatorGraphPath',
|
|
'graphOutputPath' : 'mergedGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/merge/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/merge_graph',
|
|
'priority' : 'BETA'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="promoteActionsRaw"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="promoteActionsRaw" type="SubmitHadoopJob">
|
|
<DESCRIPTION>create the RAW graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'inputActionSetIds' : 'actionSetIdsRawGraph',
|
|
'inputGraphRootPath' : 'mergedGraphPath',
|
|
'outputGraphRootPath' : 'rawGraphPath',
|
|
'isLookupUrl' : 'isLookUpUrl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/actionmanager/wf/main/oozie_app',
|
|
'sparkExecutorCores' : '3',
|
|
'sparkExecutorMemory' : '10G',
|
|
'activePromoteDatasetActionPayload' : 'true',
|
|
'activePromoteDatasourceActionPayload' : 'true',
|
|
'activePromoteOrganizationActionPayload' : 'true',
|
|
'activePromoteOtherResearchProductActionPayload' : 'true',
|
|
'activePromoteProjectActionPayload' : 'true',
|
|
'activePromotePublicationActionPayload' : 'true',
|
|
'activePromoteRelationActionPayload' : 'true',
|
|
'activePromoteResultActionPayload' : 'true',
|
|
'activePromoteSoftwareActionPayload' : 'true',
|
|
'mergeAndGetStrategy' : 'MERGE_FROM_AND_GET',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/promoteActionsRaw'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="graphCleaningFirst"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="graphCleaningFirst" type="SubmitHadoopJob">
|
|
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphInputPath' : 'rawGraphPath',
|
|
'graphOutputPath': 'cleanedFirstGraphPath',
|
|
'isLookupUrl': 'isLookUpUrl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/clean/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/clean'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="patchHostedBy"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="patchHostedBy" type="SubmitHadoopJob">
|
|
<DESCRIPTION>updates publication's hostedby info according to the ISSNs available from DOAJ and UNIBI</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'cleanedFirstGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'resumeFrom' : 'produceHBM',
|
|
'hostedByMapPath' : '/user/dnet.beta/data/hostedByMap',
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/hostedbymap/oozie_app',
|
|
'sparkExecutorCores' : '2',
|
|
'sparkExecutorMemory' : '12G',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/hostedbymap',
|
|
'outputPath' : '/tmp/beta_experiment/working_dir/hostedbymap'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="graphResolution"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="graphResolution" type="SubmitHadoopJob">
|
|
<DESCRIPTION>Resolve Relation</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphBasePath':'cleanedFirstGraphPath',
|
|
'unresolvedPath' :'unresolvedEntityPath',
|
|
'targetPath':'resolvedGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/resolution/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/relation_resolution',
|
|
'sparkExecutorCores' : '2',
|
|
'sparkExecutorMemory' : '12G'
|
|
}
|
|
</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="graphEntityGrouping"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="graphEntityGrouping" type="SubmitHadoopJob">
|
|
<DESCRIPTION>Resolve Relation</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphBasePath':'resolvedGraphPath',
|
|
'targetPath':'groupedGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/group/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/grouping',
|
|
'sparkExecutorCores' : '4',
|
|
'sparkExecutorMemory' : '7G'
|
|
}
|
|
</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="prepareIISActionSets"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="prepareIISActionSets" type="PrepareActionSets">
|
|
<DESCRIPTION>prepare IIS action sets</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="sets" required="true" type="string">
|
|
[
|
|
{
|
|
'set' : 'iis-document-affiliation',
|
|
'jobProperty' : 'export_action_set_id_matched_doc_organizations',
|
|
'enablingProperty' : 'active_document_affiliation',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-referenced-projects-main',
|
|
'jobProperty' : 'export_action_set_id_document_referencedProjects',
|
|
'enablingProperty' : 'active_referenceextraction_project',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-referenced-datasets-main',
|
|
'jobProperty' : 'export_action_set_id_document_referencedDatasets',
|
|
'enablingProperty' : 'active_referenceextraction_dataset',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-researchinitiative',
|
|
'jobProperty' : 'export_action_set_id_document_research_initiative',
|
|
'enablingProperty' : 'active_referenceextraction_researchinitiative',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-document-similarities',
|
|
'jobProperty' : 'export_action_set_id_document_similarities_standard',
|
|
'enablingProperty' : 'active_documentssimilarity',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-document-classes',
|
|
'jobProperty' : 'export_action_set_id_document_classes',
|
|
'enablingProperty' : 'active_documentsclassification',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-document-citations',
|
|
'jobProperty' : 'export_action_set_id_document_referencedDocuments',
|
|
'enablingProperty' : 'active_citationmatching',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-document-citations-relations',
|
|
'jobProperty' : 'export_action_set_id_citation_relations',
|
|
'enablingProperty' : 'active_citationmatching_relations',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-referenceextraction-pdb',
|
|
'jobProperty' : 'export_action_set_id_document_pdb',
|
|
'enablingProperty' : 'active_referenceextraction_pdb',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'document_software_url',
|
|
'jobProperty' : 'export_action_set_id_document_software_url',
|
|
'enablingProperty' : 'active_referenceextraction_software_url',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-entities-software',
|
|
'jobProperty' : 'export_action_set_id_entity_software',
|
|
'enablingProperty' : 'active_referenceextraction_software_url',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-communities',
|
|
'jobProperty' : 'export_action_set_id_document_community',
|
|
'enablingProperty' : 'active_referenceextraction_community',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-referenced-patents',
|
|
'jobProperty' : 'export_action_set_id_document_patent',
|
|
'enablingProperty' : 'active_referenceextraction_patent',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-entities-patent',
|
|
'jobProperty' : 'export_action_set_id_entity_patent',
|
|
'enablingProperty' : 'active_referenceextraction_patent',
|
|
'enabled' : 'true'
|
|
},
|
|
{
|
|
'set' : 'iis-covid-19',
|
|
'jobProperty' : 'export_action_set_id_document_covid19',
|
|
'enablingProperty' : 'active_referenceextraction_covid19',
|
|
'enabled' : 'true'
|
|
}
|
|
]
|
|
</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="prepareIISParameters"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="prepareIISParameters" type="PrepareIisMainParamsV2">
|
|
<DESCRIPTION>prepare IIS parameters</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="islookupLocationParam" required="true" type="string">import_islookup_service_location</PARAM>
|
|
<PARAM managedBy="system" name="objectStoreParam" required="true" type="string">import_content_objectstores_csv</PARAM>
|
|
<PARAM managedBy="system" name="objectStoreLocationParam" required="true" type="string">import_content_object_store_location</PARAM>
|
|
<PARAM managedBy="system" name="mdStoreStoreLocationParam" required="true" type="string">import_mdstore_service_location</PARAM>
|
|
<PARAM managedBy="system" name="mdStoreDatasetParam" required="true" type="string">import_dataset_mdstore_ids_csv</PARAM>
|
|
<PARAM managedBy="system" name="oozieWfAppPathParam" required="true" type="string">oozie.wf.application.path</PARAM>
|
|
<PARAM managedBy="user" name="oozieWfAppPath" required="true" type="string">/lib/iis/primary/snapshots/2021-12-09</PARAM>
|
|
<PARAM function="validValues(['IIS','DM'])" managedBy="user" name="clusterName" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="user" name="importHbaseDumpLocation" required="true" type="string">deprecated - not used</PARAM>
|
|
<PARAM managedBy="system" name="importHbaseDumpLocationParam" required="true" type="string">import_infospace_graph_location</PARAM>
|
|
<PARAM managedBy="user" name="objectStoreBlacklistCSV" required="false" type="string"/>
|
|
<PARAM managedBy="system" name="importProjectConceptsContextCSVParam" required="true" type="string">import_project_concepts_context_ids_csv</PARAM>
|
|
<PARAM managedBy="user" name="importProjectConceptsContextCSV" required="true" type="string">aginfra,beopen,citizen-science,clarin,covid-19,dariah,dh-ch,oa-pg,egi,elixir-gr,embrc,enermaps,epos,euromarine,fet-fp7,fet-h2020,fam,galaxy,gotriple,ifremer,inspired-ris,instruct,mes,neanias-underwater,ni,rda,science-innovation-policy,risis,rural-digital-europe,sdsn-gr,sobigdata</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="IIS_main"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="IIS_main" type="SubmitHadoopJob">
|
|
<DESCRIPTION>IIS main</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">iisMainJobV3</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'cluster' : 'cluster',
|
|
'oozie.wf.application.path' : 'oozie.wf.application.path',
|
|
|
|
'active_document_affiliation' : 'active_document_affiliation',
|
|
'active_referenceextraction_project' : 'active_referenceextraction_project',
|
|
'active_referenceextraction_dataset' : 'active_referenceextraction_dataset',
|
|
'active_referenceextraction_researchinitiative' : 'active_referenceextraction_researchinitiative',
|
|
'active_documentsclassification' : 'active_documentsclassification',
|
|
'active_documentssimilarity' : 'active_documentssimilarity',
|
|
'active_citationmatching' : 'active_citationmatching',
|
|
'active_citationmatching_relations' : 'active_citationmatching_relations',
|
|
'active_referenceextraction_pdb' : 'active_referenceextraction_pdb',
|
|
'active_referenceextraction_software_url' : 'active_referenceextraction_software_url',
|
|
'active_referenceextraction_community' : 'active_referenceextraction_community',
|
|
'active_referenceextraction_patent' : 'active_referenceextraction_patent',
|
|
'active_referenceextraction_covid19' : 'active_referenceextraction_covid19',
|
|
|
|
'import_content_objectstores_csv' : 'import_content_objectstores_csv',
|
|
'import_content_object_store_location' : 'import_content_object_store_location',
|
|
'import_mdstore_service_location' : 'import_mdstore_service_location',
|
|
'import_islookup_service_location' : 'import_islookup_service_location',
|
|
'import_project_concepts_context_ids_csv' : 'import_project_concepts_context_ids_csv',
|
|
'import_dataset_mdstore_ids_csv' : 'import_dataset_mdstore_ids_csv',
|
|
'import_infospace_graph_location' : 'groupedGraphPath',
|
|
|
|
'export_action_set_id_matched_doc_organizations' : 'export_action_set_id_matched_doc_organizations',
|
|
'export_action_set_id_document_referencedDatasets' : 'export_action_set_id_document_referencedDatasets',
|
|
'export_action_set_id_document_referencedProjects' : 'export_action_set_id_document_referencedProjects',
|
|
'export_action_set_id_document_research_initiative' : 'export_action_set_id_document_research_initiative',
|
|
'export_action_set_id_document_similarities_standard' : 'export_action_set_id_document_similarities_standard',
|
|
|
|
'export_action_set_id_document_referencedDocuments' : 'export_action_set_id_document_referencedDocuments',
|
|
'export_action_set_id_citation_relations' : 'export_action_set_id_citation_relations',
|
|
'export_action_set_id_document_pdb' : 'export_action_set_id_document_pdb',
|
|
'export_action_set_id_document_software_url' : 'export_action_set_id_document_software_url',
|
|
'export_action_set_id_entity_software' : 'export_action_set_id_entity_software',
|
|
'export_action_set_id_document_community' : 'export_action_set_id_document_community',
|
|
'export_action_set_id_document_patent' : 'export_action_set_id_document_patent',
|
|
'export_action_set_id_entity_patent' : 'export_action_set_id_entity_patent',
|
|
'export_action_set_id_document_covid19' : 'export_action_set_id_document_covid19',
|
|
'export_action_set_id_document_classes' : 'export_action_set_id_document_classes'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'import_mdstore_service_location' : 'http://services.openaire.eu:8280/is/services/mdStore',
|
|
'import_content_object_store_location' : 'http://services.openaire.eu:8280/is/services/objectStore',
|
|
'import_islookup_service_location' : 'http://services.openaire.eu:8280/is/services/isLookUp',
|
|
'import_content_objectstores_csv': 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146-9002-d225ffdb25aa_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,9b1acfe1-28e1-4d8d-935d-f99d1cd23c8b_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,d2d82597-b8a5-4ee7-a3e2-16df33095de9_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,81174703-1336-408b-b740-1566e032df53_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,747cece6-1b2b-47b6-850a-143b92b034ea_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,b5f5c68d-d68d-4b53-8c2c-8daa765dc252_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,d74fbcd9-6662-49c5-a809-9d892ae17c37_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,d19bdb3a-07eb-497b-af16-0700a2ac0bad_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,2ff2d259-85ca-4227-a581-4270d1e2188f_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,153fdbf9-5594-4425-a05c-5e804c01ecfb_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,d23e27c8-4696-4c59-9db4-e670acc8b922_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,76b04d5f-68c8-41d1-91f5-bd5e683c69b8_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,fcc406ac-80a4-436c-af81-da5659b0ba65_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,14c0d716-4b07-4861-8108-8a98ee259f5c_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,8b81d43a-88c4-47dd-af1f-a31795429ffb_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,03bdbb2f-95d8-40c2-be26-06b3153849a1_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,25828ad6-ce19-4869-ab00-f50c8af89912_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,f043d6bf-1e27-4700-a099-bd6e1718bfc3_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,ed98162b-984d-48b5-9069-4e4676c220dd_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,74cf3342-d8ff-44c4-9b6c-82f32804fbb5_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,06857595-9a09-4ba9-b520-03962f211782_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,a98cfd91-a351-49cf-a901-2b731aed3d17_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,e2d0c4bf-c496-4637-9b36-c9989a8b26e0_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,ddbd3cb5-b244-425a-a975-94fb8eba5a85_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,a710a888-42f2-4885-bfe7-dfb95b62494e_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,e7cba260-b7dc-43b8-922f-5686a7daa57a_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,7b3ce677-ce27-4a26-b08a-361054209447_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,be4040a8-1ab6-4e07-bfe6-b054fe1e26d3_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,e33a1a7e-9a38-451a-b1b7-a7677059e691_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,a855a42c-f254-4749-a2e5-1053d5518ea9_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,f6af618a-c667-4b57-b67f-947b0f0e5956_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,f68904d3-50f9-424f-a6a8-d643886d01f4_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,28ea697d-8e0c-417d-bd46-f0088c160bf0_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,6d74a029-4569-44ec-9e70-68d78cb7386c_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,2d8a6b94-7bd2-4f80-b60c-5a9f4aafda2c_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,62f6b1f4-e06b-4106-bf34-fbaa637b5edd_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,cefb2ed0-5f56-4884-9444-5343e6ff248c_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,3da72380-7057-489e-88a9-77160abc124d_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,2bc98bbc-66e3-4d7d-b113-619cc4ff6ff7_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,af213802-4a8f-44d8-8a9a-db80e39ecb74_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,e43c85ac-14e8-4a08-b575-ce9220cd448a_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,9279d3f2-270b-4d23-a653-02573d4a1e85_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,ARCS3PDF-0e73-473b-8502-71793ea55769_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,2dca6fc4-fdfb-42f6-a18c-bfa6b1101ad6_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,4a4cf004-7f89-4362-869c-2b3fbb0c5266_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,18857150-a6f4-4315-8296-bd15ee8b0445_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,646d810f-4100-45da-96b6-47be0c3258ce_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,3239c2d2-7efe-43bd-8c5f-29e3c5f0b81f_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,b8ff4cbc-a503-427d-bd4f-9ddf74210440_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,681407d2-10e2-41ce-87aa-d96c55c41743_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,82007298-16a8-41a0-876c-a018e24c40b0_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,e558703f-7d1c-45b4-b322-79fa83fc6b19_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,01d78f0a-4f3c-4c14-b47e-8a602640e04f_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,915a35fb-8be9-47d9-92b0-130d7303df59_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,c449e02d-cc9a-4737-b20c-fb5f8ba0fbfc_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl,62d58ec0-78bf-408b-b6a3-8f0a1477e2a8_T2JqZWN0U3RvcmVEU1Jlc291cmNlcy9PYmplY3RTdG9yZURTUmVzb3VyY2VUeXBl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="user" name="simulation" required="true" type="boolean">false</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="updateIISActionSets"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="updateIISActionSets" type="UpdateActionSets">
|
|
<DESCRIPTION>update IIS action sets</DESCRIPTION>
|
|
<PARAMETERS/>
|
|
<ARCS>
|
|
<ARC to="promoteActionsIIS"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="promoteActionsIIS" type="SubmitHadoopJob">
|
|
<DESCRIPTION>create the INFERRED graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'inputActionSetIds' : 'actionSetIdsIISGraph',
|
|
'inputGraphRootPath' : 'groupedGraphPath',
|
|
'outputGraphRootPath' : 'inferredGraphPath',
|
|
'isLookupUrl' : 'isLookUpUrl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/actionmanager/wf/main/oozie_app',
|
|
'sparkExecutorCores' : '3',
|
|
'sparkExecutorMemory' : '10G',
|
|
'activePromoteDatasetActionPayload' : 'true',
|
|
'activePromoteDatasourceActionPayload' : 'true',
|
|
'activePromoteOrganizationActionPayload' : 'true',
|
|
'activePromoteOtherResearchProductActionPayload' : 'true',
|
|
'activePromoteProjectActionPayload' : 'true',
|
|
'activePromotePublicationActionPayload' : 'true',
|
|
'activePromoteRelationActionPayload' : 'true',
|
|
'activePromoteResultActionPayload' : 'true',
|
|
'activePromoteSoftwareActionPayload' : 'true',
|
|
'mergeAndGetStrategy' : 'MERGE_FROM_AND_GET',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/promoteActionsIIS'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="duplicateScan"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="duplicateScan" type="SubmitHadoopJob">
|
|
<DESCRIPTION>search for duplicates in the raw graph</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'actionSetId' : 'dedupConfig',
|
|
'graphBasePath' : 'inferredGraphPath',
|
|
'dedupGraphPath': 'dedupGraphPath',
|
|
'isLookUpUrl' : 'isLookUpUrl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/dedup/scan/oozie_app',
|
|
'actionSetIdOpenorgs' : 'dedup-similarity-organization-simple',
|
|
'workingPath' : '/tmp/beta_experiment/working_dir/dedup',
|
|
'whiteListPath' : '/data/dedup/whitelist_beta',
|
|
'sparkExecutorCores' : '4',
|
|
'sparkExecutorMemory' : '7G',
|
|
'sparkDriverMemory' : '6G'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="dedupConsistency"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="dedupConsistency" type="SubmitHadoopJob">
|
|
<DESCRIPTION>mark duplicates as deleted and redistribute the relationships</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphBasePath' : 'dedupGraphPath',
|
|
'graphOutputPath': 'consistentGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/dedup/consistency/oozie_app',
|
|
'workingPath' : '/tmp/beta_experiment/working_dir/dedup'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="orcidPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="orcidPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>propagates ORCID among results linked by allowedsemrels semantic relationships</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'consistentGraphPath',
|
|
'outputPath': 'orcidGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/orcidtoresultfromsemrel/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/orcid',
|
|
'allowedsemrels' : 'IsSupplementedBy;IsSupplementTo;isSupplementedBy;isSupplementTo',
|
|
'saveGraph' : 'true',
|
|
'sparkExecutorCores' : '3',
|
|
'sparkExecutorMemory' : '10G'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="bulkTagging"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="bulkTagging" type="SubmitHadoopJob">
|
|
<DESCRIPTION>mark results respecting some rules as belonging to communities</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'orcidGraphPath',
|
|
'outputPath': 'bulkTaggingGraphPath',
|
|
'isLookUpUrl' : 'isLookUpUrl',
|
|
'pathMap' : 'bulkTaggingPathMap'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/bulktag/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/bulktag'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="affiliationPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="affiliationPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>creates relashionships between results and organizations when the organizations are associated to institutional repositories</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'bulkTaggingGraphPath',
|
|
'outputPath': 'affiliationGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/affiliation/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/affiliation',
|
|
'saveGraph' : 'true',
|
|
'blacklist' : 'empty'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="affiliationSemRelPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="affiliationSemRelPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>creates relashionships between results and organizations when the organizations are in parent/child relationships. The childs to the parents</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'affiliationGraphPath',
|
|
'outputPath': 'affiliationSemRelGraphPath',
|
|
'iterations':'iterations'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/affiliation_semrel/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/affiliationsemrel'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="communityOrganizationPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="communityOrganizationPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>marks as belonging to communities the result collected from datasources related to the organizations specified in the organizationCommunityMap</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'affiliationSemRelGraphPath',
|
|
'outputPath': 'communityOrganizationGraphPath',
|
|
'organizationtoresultcommunitymap': 'propagationOrganizationCommunityMap'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/community_organization/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/community_organization',
|
|
'saveGraph' : 'true'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="resultProjectPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="resultProjectPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>created relation between projects and results linked to other results trough allowedsemrel semantic relations linked to projects</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'communityOrganizationGraphPath',
|
|
'outputPath': 'fundingGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/funding/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/funding',
|
|
'allowedsemrels' : 'IsSupplementedBy;IsSupplementTo',
|
|
'saveGraph' : 'true'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="communitySemrelPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="communitySemrelPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>tag as belonging to communitites result in in allowedsemrels relation with other result already linked to communities </DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'fundingGraphPath',
|
|
'outputPath': 'communitySemRelGraphPath',
|
|
'isLookUpUrl' : 'isLookUpUrl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/community_semrel/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/community_semrel',
|
|
'allowedsemrels' : 'IsSupplementedBy;IsSupplementTo',
|
|
'saveGraph' : 'true'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="countryPropagation"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="countryPropagation" type="SubmitHadoopJob">
|
|
<DESCRIPTION>associated to results colleced from allowedtypes and those in the whithelist the country of the organization(s) handling the datasource it is collected from </DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'communitySemRelGraphPath',
|
|
'outputPath': 'countryGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/country/oozie_app',
|
|
'sparkExecutorCores' : '3',
|
|
'sparkExecutorMemory' : '10G',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/country',
|
|
'allowedtypes' : 'pubsrepository::institutional',
|
|
'whitelist':'10|opendoar____::16e6a3326dd7d868cbc926602a61e4d0;10|eurocrisdris::fe4903425d9040f680d8610d9079ea14;10|openaire____::5b76240cc27a58c6f7ceef7d8c36660e;10|openaire____::172bbccecf8fca44ab6a6653e84cb92a;10|openaire____::149c6590f8a06b46314eed77bfca693f;10|eurocrisdris::a6026877c1a174d60f81fd71f62df1c1;10|openaire____::4692342f0992d91f9e705c26959f09e0;10|openaire____::8d529dbb05ec0284662b391789e8ae2a;10|openaire____::345c9d171ef3c5d706d08041d506428c;10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0;10|opendoar____::7a614fd06c325499f1680b9896beedeb;10|opendoar____::1ee3dfcd8a0645a25a35977997223d22;10|opendoar____::d296c101daa88a51f6ca8cfc1ac79b50;10|opendoar____::798ed7d4ee7138d49b8828958048130a;10|openaire____::c9d2209ecc4d45ba7b4ca7597acb88a2;10|eurocrisdris::c49e0fe4b9ba7b7fab717d1f0f0a674d;10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539;10|eurocrisdris::432ca599953ff50cd4eeffe22faf3e48',
|
|
'saveGraph' : 'true'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="graphCleaning"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="graphCleaning" type="SubmitHadoopJob">
|
|
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'graphInputPath' : 'countryGraphPath',
|
|
'graphOutputPath': 'cleanedGraphPath',
|
|
'isLookupUrl': 'isLookUpUrl'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/graph/clean/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/clean'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="blacklistRelations"/>
|
|
</ARCS>
|
|
</NODE>
|
|
<NODE name="blacklistRelations" type="SubmitHadoopJob">
|
|
<DESCRIPTION>removes blacklisted relations </DESCRIPTION>
|
|
<PARAMETERS>
|
|
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
|
|
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
|
|
<PARAM managedBy="system" name="envParams" required="true" type="string">
|
|
{
|
|
'sourcePath' : 'cleanedGraphPath',
|
|
'outputPath': 'blacklistedGraphPath'
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="params" required="true" type="string">
|
|
{
|
|
'oozie.wf.application.path' : '/lib/dnet/BETA/oa/enrichment/blacklist/oozie_app',
|
|
'workingDir' : '/tmp/beta_experiment/working_dir/blacklist',
|
|
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
|
|
'postgresUser' : '',
|
|
'postgresPassword' : ''
|
|
}
|
|
</PARAM>
|
|
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
|
|
</PARAMETERS>
|
|
<ARCS>
|
|
<ARC to="success"/>
|
|
</ARCS>
|
|
</NODE>
|
|
</CONFIGURATION>
|
|
<STATUS>
|
|
<LAST_EXECUTION_ID>wf_20220111_200505_785</LAST_EXECUTION_ID>
|
|
<LAST_EXECUTION_DATE>2022-01-11T20:08:53+00:00</LAST_EXECUTION_DATE>
|
|
<LAST_EXECUTION_STATUS></LAST_EXECUTION_STATUS>
|
|
<LAST_EXECUTION_ERROR></LAST_EXECUTION_ERROR>
|
|
</STATUS>
|
|
</BODY>
|
|
</RESOURCE_PROFILE> |