159 lines
7.0 KiB
XML
159 lines
7.0 KiB
XML
<workflow-app name="Create Scholix final Graph" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>sourcePath</name>
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<description>the working dir base path</description>
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</property>
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<property>
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<name>targetPath</name>
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<description>the final graph path</description>
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</property>
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</parameters>
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<start to="ImportDatasetEntities"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="ImportDatasetEntities">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Import JSONRDD to Dataset kryo</name>
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<class>eu.dnetlib.dhp.sx.graph.SparkConvertRDDtoDataset</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.shuffle.partitions=3000
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--targetPath</arg><arg>${targetPath}</arg>
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</spark>
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<ok to="CreateSummaries"/>
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<error to="Kill"/>
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</action>
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<action name="CreateSummaries">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Convert Entities to summaries</name>
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<class>eu.dnetlib.dhp.sx.graph.SparkCreateSummaryObject</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.shuffle.partitions=5000
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--sourcePath</arg><arg>${targetPath}/entities</arg>
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<arg>--targetPath</arg><arg>${targetPath}/provision/summaries</arg>
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</spark>
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<ok to="CreateScholix"/>
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<error to="Kill"/>
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</action>
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<action name="CreateScholix">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Generate Scholix Dataset</name>
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<class>eu.dnetlib.dhp.sx.graph.SparkCreateScholix</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.shuffle.partitions=6000
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--summaryPath</arg><arg>${targetPath}/provision/summaries</arg>
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<arg>--targetPath</arg><arg>${targetPath}/provision/scholix</arg>
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<arg>--relationPath</arg><arg>${targetPath}/relation</arg>
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</spark>
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<ok to="DropJSONPath"/>
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<error to="Kill"/>
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</action>
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<action name="DropJSONPath">
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<fs>
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<delete path='${targetPath}/index'/>
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<mkdir path='${targetPath}/index/'/>
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</fs>
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<ok to="SerializeScholix"/>
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<error to="Kill"/>
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</action>
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<action name="SerializeScholix">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Serialize scholix to JSON</name>
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<class>eu.dnetlib.dhp.sx.graph.SparkConvertObjectToJson</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.shuffle.partitions=6000
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--sourcePath</arg><arg>${targetPath}/provision/scholix/scholix</arg>
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<arg>--targetPath</arg><arg>${targetPath}/index/scholix_json</arg>
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<arg>--objectType</arg><arg>scholix</arg>
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</spark>
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<ok to="SerializeSummary"/>
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<error to="Kill"/>
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</action>
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<action name="SerializeSummary">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Serialize summary to JSON</name>
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<class>eu.dnetlib.dhp.sx.graph.SparkConvertObjectToJson</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.shuffle.partitions=6000
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--sourcePath</arg><arg>${targetPath}/provision/summaries_filtered</arg>
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<arg>--targetPath</arg><arg>${targetPath}/index/summaries_json</arg>
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<arg>--objectType</arg><arg>summary</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |