90 lines
2.5 KiB
Scala
90 lines
2.5 KiB
Scala
package eu.dnetlib.doiboost.orcid
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import eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactory
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import eu.dnetlib.dhp.schema.oaf.{Author, Publication}
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import eu.dnetlib.doiboost.DoiBoostMappingUtil
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import eu.dnetlib.doiboost.DoiBoostMappingUtil.{ORCID, PID_TYPES, createSP, generateDataInfo, generateIdentifier}
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import org.apache.commons.lang.StringUtils
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import org.codehaus.jackson.map.ObjectMapper
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import org.slf4j.{Logger, LoggerFactory}
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import scala.collection.JavaConverters._
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case class ORCIDItem(oid:String,name:String,surname:String,creditName:String,errorCode:String){}
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case class ORCIDElement(doi:String, authors:List[ORCIDItem]) {}
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object ORCIDToOAF {
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val logger: Logger = LoggerFactory.getLogger(ORCIDToOAF.getClass)
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val mapper = new ObjectMapper
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def isJsonValid(inputStr: String): Boolean = {
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import java.io.IOException
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try {
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mapper.readTree(inputStr)
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true
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} catch {
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case e: IOException =>
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false
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}
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}
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def extractValueFromInputString(input: String): (String, String) = {
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val i = input.indexOf('[')
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if (i <5) {
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return null
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}
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val orcidList = input.substring(i, input.length - 1)
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val doi = input.substring(1, i - 1)
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if (isJsonValid(orcidList)) {
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(doi, orcidList)
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} else null
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}
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def convertTOOAF(input:ORCIDElement) :Publication = {
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val doi = input.doi
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val pub:Publication = new Publication
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pub.setPid(List(createSP(doi, "doi", PID_TYPES)).asJava)
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pub.setDataInfo(generateDataInfo())
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//IMPORTANT
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//The old method pub.setId(IdentifierFactory.createIdentifier(pub))
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//will be replaced using IdentifierFactory
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pub.setId(generateIdentifier(pub, doi.toLowerCase))
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pub.setId(IdentifierFactory.createIdentifier(pub))
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try{
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pub.setAuthor(input.authors.map(a=> {
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generateAuthor(a.name, a.surname, a.creditName, a.oid)
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}).asJava)
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pub.setCollectedfrom(List(DoiBoostMappingUtil.createORIDCollectedFrom()).asJava)
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pub.setDataInfo(DoiBoostMappingUtil.generateDataInfo())
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pub
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} catch {
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case e: Throwable =>
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logger.info(s"ERROR ON GENERATE Publication from $input")
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null
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}
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}
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def generateAuthor(given: String, family: String, fullName:String, orcid: String): Author = {
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val a = new Author
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a.setName(given)
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a.setSurname(family)
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if (fullName!= null && fullName.nonEmpty)
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a.setFullname(fullName)
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else
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a.setFullname(s"$given $family")
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if (StringUtils.isNotBlank(orcid))
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a.setPid(List(createSP(orcid, ORCID, PID_TYPES)).asJava)
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a
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}
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}
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