188 lines
6.1 KiB
XML
188 lines
6.1 KiB
XML
<workflow-app name="dump_graph" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>sourcePath</name>
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<description>the source path</description>
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</property>
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<property>
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<name>allowedsemrels</name>
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<description>the semantic relationships allowed for propagation</description>
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</property>
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<property>
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<name>outputPath</name>
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<description>the output path</description>
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</property>
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<property>
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<name>isLookUpUrl</name>
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<description>the isLookup service endpoint</description>
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</property>
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<property>
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<name>pathMap</name>
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<description>the json path associated to each selection field</description>
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</property>
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<property>
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<name>hiveDbName</name>
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<description>the target hive database name</description>
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</property>
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<property>
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<name>hiveJdbcUrl</name>
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<description>hive server jdbc url</description>
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</property>
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<property>
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<name>hiveMetastoreUris</name>
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<description>hive server metastore URIs</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="resumeFrom"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<decision name="resumeFrom">
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<switch>
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<case to="send_zenodo">${wf:conf('onlyUpload') eq true}</case>
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<default to="orcid_propagation"/>
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</switch>
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</decision>
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<action name="orcid_propagation">
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<sub-workflow>
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<app-path>${wf:appPath()}/orcid_propagation
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</app-path>
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<propagate-configuration/>
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<configuration>
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<property>
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<name>sourcePath</name>
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<value>${sourcePath}</value>
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</property>
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<property>
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<name>allowedsemrels</name>
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<value>${allowedsemrels}</value>
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</property>
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<property>
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<name>outputPath</name>
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<value>${outputPath}</value>
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</property>
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</configuration>
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</sub-workflow>
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<ok to="bulk_tagging" />
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<error to="Kill" />
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</action>
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<action name="bulk_tagging">
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<sub-workflow>
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<app-path>${wf:appPath()}/bulk_tagging
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</app-path>
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<propagate-configuration/>
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<configuration>
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<property>
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<name>sourcePath</name>
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<value>${outputPath}</value>
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</property>
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<property>
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<name>isLookUpUrl</name>
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<value>${isLookUpUrl}</value>
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</property>
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<property>
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<name>pathMap</name>
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<value>${pathMap}</value>
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</property>
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<property>
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<name>outputPath</name>
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<value>${workingDir}/results</value>
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</property>
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</configuration>
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</sub-workflow>
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<ok to="affiliation_inst_repo" />
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<error to="Kill" />
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</action>
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<action name="affiliation_inst_repo">
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<sub-workflow>
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<app-path>${wf:appPath()}/bulk_tagging
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</app-path>
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<propagate-configuration/>
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<configuration>
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<property>
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<name>sourcePath</name>
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<value>${outputPath}</value>
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</property>
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<property>
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<name>outputPath</name>
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<value>${workingDir}/relations</value>
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</property>
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<property>
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<name>blacklist</name>
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<value>${blacklist}</value>
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</property>
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</configuration>
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</sub-workflow>
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<ok to="bulk_tagging" />
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<error to="Kill" />
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</action>
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<end name="End"/>
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</workflow-app>
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