116 lines
4.1 KiB
XML
116 lines
4.1 KiB
XML
<workflow-app name="Create Raw Graph Step 1: import Entities from aggregator to HDFS" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>reuseContent</name>
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<value>false</value>
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<description>should import content from the aggregator or reuse a previous version</description>
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</property>
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<property>
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<name>workingPath</name>
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<description>the working dir base path</description>
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</property>
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<property>
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<name>targetXMLPath</name>
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<description>the graph Raw base path</description>
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</property>
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<property>
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<name>targetEntityPath</name>
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<description>the graph Raw base path</description>
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</property>
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<property>
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<name>format</name>
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<description>the postgres URL to access to the database</description>
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</property>
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<property>
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<name>layout</name>
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<description>the user postgres</description>
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</property>
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<property>
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<name>interpretation</name>
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<description>the password postgres</description>
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</property>
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<property>
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<name>dbhost</name>
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<description>mongoDB url, example: mongodb://[username:password@]host[:port]</description>
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</property>
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<property>
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<name>dbName</name>
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<description>mongo database</description>
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</property>
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<property>
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<name>entity</name>
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<description>the entity type</description>
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</property>
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</parameters>
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<start to="ReuseContent"/>
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<decision name="ReuseContent">
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<switch>
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<case to="ResetWorkingPath">${wf:conf('reuseContent') eq false}</case>
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<case to="ResetTargetPath">${wf:conf('reuseContent') eq true}</case>
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<default to="ResetWorkingPath"/>
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</switch>
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</decision>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="ResetWorkingPath">
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<fs>
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<delete path='${workingPath}'/>
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<mkdir path='${workingPath}/input'/>
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</fs>
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<ok to="ImportEntitiesFromMongo"/>
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<error to="Kill"/>
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</action>
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<action name="ImportEntitiesFromMongo">
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<java>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<main-class>eu.dnetlib.dhp.sx.graph.ImportDataFromMongo</main-class>
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<arg>-t</arg><arg>${targetXMLPath}</arg>
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<arg>-n</arg><arg>${nameNode}</arg>
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<arg>-h</arg><arg>${dbhost}</arg>
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<arg>-p</arg><arg>27017</arg>
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<arg>-dn</arg><arg>${dbName}</arg>
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<arg>-f</arg><arg>${format}</arg>
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<arg>-l</arg><arg>${layout}</arg>
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<arg>-i</arg><arg>${interpretation}</arg>
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</java>
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<ok to="ResetTargetPath"/>
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<error to="Kill"/>
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</action>
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<action name="ResetTargetPath">
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<fs>
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<delete path='${targetEntityPath}'/>
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</fs>
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<ok to="ConvertXML2Entity"/>
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<error to="Kill"/>
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</action>
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<action name="ConvertXML2Entity">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<master>yarn-cluster</master>
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<mode>cluster</mode>
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<name>Import ${entity} and related entities</name>
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<class>eu.dnetlib.dhp.sx.graph.SparkScholexplorerGraphImporter</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>--executor-memory ${sparkExecutorMemory} --driver-memory=${sparkDriverMemory} ${sparkExtraOPT}</spark-opts>
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<arg>-mt</arg> <arg>yarn-cluster</arg>
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<arg>--sourcePath</arg><arg>${targetXMLPath}</arg>
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<arg>--targetPath</arg><arg>${targetEntityPath}</arg>
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<arg>--entity</arg><arg>${entity}</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |