dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/hostedbymap/GetCSV.java

76 lines
2.0 KiB
Java

package eu.dnetlib.dhp.oa.graph.hostedbymap;
import java.io.*;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileSystem;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.collection.HttpConnector2;
public class GetCSV {
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
GetCSV.class
.getResourceAsStream(
"/eu/dnetlib/dhp/oa/graph/hostedbymap/download_csv_parameters.json")));
parser.parseArgument(args);
final String fileURL = parser.get("fileURL");
final String hdfsPath = parser.get("workingPath");
final String hdfsNameNode = parser.get("hdfsNameNode");
final String classForName = parser.get("classForName");
final String delimiter = Optional
.ofNullable(parser.get("delimiter"))
.orElse(null);
final Boolean shouldReplace = Optional
.ofNullable((parser.get("replace")))
.map(Boolean::valueOf)
.orElse(false);
char del = ';';
if (delimiter != null) {
del = delimiter.charAt(0);
}
HttpConnector2 connector2 = new HttpConnector2();
BufferedReader in = new BufferedReader(
new InputStreamReader(connector2.getInputSourceAsStream(fileURL)));
if (Boolean.TRUE.equals(shouldReplace)) {
try (PrintWriter writer = new PrintWriter(new BufferedWriter(new FileWriter("/tmp/replaced.csv")))) {
String line;
while ((line = in.readLine()) != null) {
writer.println(line.replace("\\\"", "\""));
}
}
in.close();
in = new BufferedReader(new FileReader("/tmp/replaced.csv"));
}
Configuration conf = new Configuration();
conf.set("fs.defaultFS", hdfsNameNode);
FileSystem fileSystem = FileSystem.get(conf);
eu.dnetlib.dhp.common.collection.GetCSV.getCsv(fileSystem, in, hdfsPath, classForName, del);
in.close();
if (Boolean.TRUE.equals(shouldReplace)) {
File f = new File("/tmp/DOAJ.csv");
f.delete();
}
}
}