dnet-hadoop/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/hostedbymap/DownloadCSV2.java

85 lines
2.4 KiB
Java

package eu.dnetlib.dhp.oa.graph.hostedbymap;
import java.io.*;
import java.util.Objects;
import java.util.Optional;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileSystem;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.collection.GetCSV;
import eu.dnetlib.dhp.common.collection.HttpConnector2;
public class DownloadCSV2 {
private static final Logger log = LoggerFactory.getLogger(DownloadCSV2.class);
public static final char DEFAULT_DELIMITER = ';';
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
Objects
.requireNonNull(
DownloadCSV2.class
.getResourceAsStream(
"/eu/dnetlib/dhp/oa/graph/hostedbymap/download_csv_parameters.json"))));
parser.parseArgument(args);
final String fileURL = parser.get("fileURL");
log.info("fileURL {}", fileURL);
final String tmpFile = parser.get("tmpFile");
log.info("tmpFile {}", tmpFile);
final String outputFile = parser.get("outputFile");
log.info("outputFile {}", outputFile);
final String hdfsNameNode = parser.get("hdfsNameNode");
log.info("hdfsNameNode {}", hdfsNameNode);
final String classForName = parser.get("classForName");
log.info("classForName {}", classForName);
final char delimiter = Optional
.ofNullable(parser.get("delimiter"))
.map(s -> s.charAt(0))
.orElse(DEFAULT_DELIMITER);
log.info("delimiter {}", delimiter);
HttpConnector2 connector2 = new HttpConnector2();
try (BufferedReader in = new BufferedReader(
new InputStreamReader(connector2.getInputSourceAsStream(fileURL)))) {
try (PrintWriter writer = new PrintWriter(new BufferedWriter(new FileWriter(tmpFile)))) {
String line;
while ((line = in.readLine()) != null) {
writer.println(line.replace("\\\"", "\""));
}
}
}
try (BufferedReader in = new BufferedReader(new FileReader(tmpFile))) {
Configuration conf = new Configuration();
conf.set("fs.defaultFS", hdfsNameNode);
FileSystem fileSystem = FileSystem.get(conf);
GetCSV.getCsv(fileSystem, in, outputFile, classForName, delimiter);
} finally {
FileUtils.deleteQuietly(new File(tmpFile));
}
}
}