105 lines
4.1 KiB
XML
105 lines
4.1 KiB
XML
<workflow-app name="Enrich_graph_with_ORCID_Workflow" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>orcidPath</name>
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<description>the path of the orcid Table generated by the dump</description>
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</property>
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<property>
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<name>graphPath</name>
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<description>the path of the graph we want to apply enrichment</description>
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</property>
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<property>
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<name>targetPath</name>
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<description>the output path of the graph enriched</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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</parameters>
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<start to="EnrichGraph"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="EnrichGraph">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Enrich Graph with ORCID</name>
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<class>eu.dnetlib.dhp.enrich.orcid.SparkEnrichGraphWithOrcidAuthors</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.executor.memoryOverhead=${sparkExecutorMemory}
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--conf spark.sql.shuffle.partitions=5000
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--orcidPath</arg><arg>${orcidPath}</arg>
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<arg>--targetPath</arg><arg>${targetPath}</arg>
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<arg>--graphPath</arg><arg>${graphPath}</arg>
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<arg>--master</arg><arg>yarn</arg>
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</spark>
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<ok to="reset_outputpath"/>
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<error to="Kill"/>
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</action>
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<action name="reset_outputpath">
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<fs>
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<delete path="${targetPath}/datasource"/>
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<delete path="${targetPath}/organization"/>
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<delete path="${targetPath}/project"/>
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<delete path="${targetPath}/relation"/>
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</fs>
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<ok to="copy_datasource"/>
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<error to="Kill"/>
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</action>
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<action name="copy_datasource">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<arg>${nameNode}/${graphPath}/datasource</arg>
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<arg>${nameNode}/${targetPath}/datasource</arg>
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</distcp>
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<ok to="copy_organization"/>
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<error to="Kill"/>
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</action>
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<action name="copy_organization">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<arg>${nameNode}/${graphPath}/organization</arg>
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<arg>${nameNode}/${targetPath}/organization</arg>
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</distcp>
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<ok to="copy_project"/>
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<error to="Kill"/>
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</action>
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<action name="copy_project">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<arg>${nameNode}/${graphPath}/project</arg>
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<arg>${nameNode}/${targetPath}/project</arg>
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</distcp>
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<ok to="copy_relation"/>
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<error to="Kill"/>
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</action>
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<action name="copy_relation">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<arg>${nameNode}/${graphPath}/relation</arg>
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<arg>${nameNode}/${targetPath}/relation</arg>
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</distcp>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |