217 lines
11 KiB
XML
217 lines
11 KiB
XML
<workflow-app name="affiliation_from_instrepo_propagation" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>sourcePath</name>
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<description>the source path</description>
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</property>
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<property>
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<name>blacklist</name>
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<description>The list of institutional repositories that should not be used for the propagation</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="reset_outputpath"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="reset_outputpath">
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<fs>
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<delete path="${workingDir}"/>
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<mkdir path="${workingDir}"/>
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</fs>
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<ok to="prepare_result_organization_association"/>
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<error to="Kill"/>
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</action>
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<action name="prepare_result_organization_association">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>PrepareResultOrganizationAssociation</name>
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<class>eu.dnetlib.dhp.resulttoorganizationfrominstrepo.PrepareResultInstRepoAssociation</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/affiliationInstRepo</arg>
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<arg>--blacklist</arg><arg>${blacklist}</arg>
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<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
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</spark>
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<ok to="fork_join_apply_resulttoorganization_propagation"/>
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<error to="Kill"/>
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</action>
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<fork name="fork_join_apply_resulttoorganization_propagation">
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<path start="join_propagation_publication"/>
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<path start="join_propagation_dataset"/>
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<path start="join_propagation_otherresearchproduct"/>
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<path start="join_propagation_software"/>
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</fork>
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<action name="join_propagation_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>resultToOrganizationFromInstRepoPropagationForPublications</name>
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<class>eu.dnetlib.dhp.resulttoorganizationfrominstrepo.SparkResultToOrganizationFromIstRepoJob</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}/publication</arg>
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<arg>--outputPath</arg><arg>${workingDir}/affiliationInstRepo/publication/relation</arg>
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<arg>--datasourceOrganizationPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/datasourceOrganization</arg>
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<arg>--alreadyLinkedPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/alreadyLinked</arg>
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<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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</spark>
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<ok to="wait2"/>
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<error to="Kill"/>
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</action>
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<action name="join_propagation_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>resultToOrganizationFromInstRepoPropagationForDataset</name>
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<class>eu.dnetlib.dhp.resulttoorganizationfrominstrepo.SparkResultToOrganizationFromIstRepoJob</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}/dataset</arg>
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<arg>--outputPath</arg><arg>${workingDir}/affiliationInstRepo/dataset/relation</arg>
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<arg>--datasourceOrganizationPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/datasourceOrganization</arg>
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<arg>--alreadyLinkedPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/alreadyLinked</arg>
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<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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</spark>
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<ok to="wait2"/>
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<error to="Kill"/>
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</action>
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<action name="join_propagation_otherresearchproduct">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>resultToOrganizationFromInstRepoPropagationForORP</name>
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<class>eu.dnetlib.dhp.resulttoorganizationfrominstrepo.SparkResultToOrganizationFromIstRepoJob</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}/otherresearchproduct</arg>
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<arg>--outputPath</arg><arg>${workingDir}/affiliationInstRepo/otherresearchproduct/relation</arg>
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<arg>--datasourceOrganizationPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/datasourceOrganization</arg>
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<arg>--alreadyLinkedPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/alreadyLinked</arg>
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<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
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</spark>
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<ok to="wait2"/>
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<error to="Kill"/>
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</action>
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<action name="join_propagation_software">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>resultToOrganizationFromInstRepoPropagationForSoftware</name>
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<class>eu.dnetlib.dhp.resulttoorganizationfrominstrepo.SparkResultToOrganizationFromIstRepoJob</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}/software</arg>
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<arg>--outputPath</arg><arg>${workingDir}/affiliationInstRepo/software/relation</arg>
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<arg>--datasourceOrganizationPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/datasourceOrganization</arg>
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<arg>--alreadyLinkedPath</arg><arg>${workingDir}/affiliationInstRepo/preparedInfo/alreadyLinked</arg>
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<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
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<arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
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</spark>
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<ok to="wait2"/>
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<error to="Kill"/>
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</action>
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<join name="wait2" to="append_new_relations"/>
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<action name="append_new_relations">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>append new relations</name>
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<class>eu.dnetlib.dhp.resulttoorganizationfrominstrepo.AppendNewRelations</class>
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<jar>dhp-enrichment-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.dynamicAllocation.enabled=true
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--conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
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</spark-opts>
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<arg>--outputPath</arg><arg>${sourcePath}/relation</arg>
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<arg>--sourcePath</arg><arg>${workingDir}/affiliationInstRepo/</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |