120 lines
7.0 KiB
XML
120 lines
7.0 KiB
XML
<?xml version='1.0' encoding='utf-8'?>
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<record xmlns:oaf="http://namespace.openaire.eu/oaf"
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xmlns:oai="http://www.openarchives.org/OAI/2.0/"
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xmlns:datacite="http://datacite.org/schema/kernel-3"
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xmlns:dr="http://www.driver-repository.eu/namespace/dr"
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xmlns:dri="http://www.driver-repository.eu/namespace/dri">>
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<header xmlns="http://www.openarchives.org/OAI/2.0/">
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<identifier>oai:zenodo.org:7351393</identifier>
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<datestamp>2020-01-20T16:45:20Z</datestamp>
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<setSpec>openaire</setSpec>
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<dri:objIdentifier>od______2659::db2bc6381545f80dc9feec808a173ec0</dri:objIdentifier>
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<dri:dateOfCollection>2022-11-25T01:08:31Z</dri:dateOfCollection>
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</header>
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<metadata>
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<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
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<identifier identifierType="DOI">10.5281/zenodo.7351393</identifier>
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<creators>
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<creator>
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<creatorName>Karki, Reagon</creatorName>
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<givenName>Reagon</givenName>
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<familyName>Karki</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-1815-0037</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</creator>
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<creator>
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<creatorName>Andrea, Zaliani</creatorName>
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<givenName>Zaliani</givenName>
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<familyName>Andrea</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-1740-8390</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</creator>
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<creator>
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<creatorName>Gadiya, Yojana</creatorName>
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<givenName>Yojana</givenName>
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<familyName>Gadiya</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7683-0452</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</creator>
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<creator>
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<creatorName>Gribbon, Philip</creatorName>
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<givenName>Philip</givenName>
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<familyName>Gribbon</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-7655-2459</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</creator>
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</creators>
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<titles>
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<title>Monkeypox Knowledge Graph: A semantic resource embedding biological and chemical entities</title>
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</titles>
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<publisher>Zenodo</publisher>
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<publicationYear>2022</publicationYear>
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<subjects>
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<subject classid="keyword" classname="keyword" schemeid="dnet:subject_classification_typologies" schemename="dnet:subject_classification_typologies" >knowledge graph</subject>
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<subject classid="keyword" classname="keyword" schemeid="dnet:subject_classification_typologies" schemename="dnet:subject_classification_typologies" >monkeypox</subject>
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<subject classid="keyword" classname="keyword" schemeid="dnet:subject_classification_typologies" schemename="dnet:subject_classification_typologies" >systems biology</subject>
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</subjects>
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<dates>
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<date dateType="Issued">2022-07-28</date>
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</dates>
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<resourceType resourceTypeGeneral="Software"/>
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<alternateIdentifiers>
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<alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/7351393</alternateIdentifier>
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</alternateIdentifiers>
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<relatedIdentifiers>
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<relatedIdentifier relatedIdentifierType="DOI" relationType="IsCitedBy" resourceTypeGeneral="Preprint">10.1101/2022.08.02.502453</relatedIdentifier>
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<relatedIdentifier relatedIdentifierType="URL" relationType="IsDerivedFrom" resourceTypeGeneral="Software">https://github.com/Fraunhofer-ITMP/mpox-kg/blob/main/graph.ipynb</relatedIdentifier>
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<relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.7351392</relatedIdentifier>
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</relatedIdentifiers>
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<version>v1.0.0</version>
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<rightsList>
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<rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
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</rightsList>
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<descriptions>
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<description descriptionType="Abstract"><p>The Monkeypox KG is built using viral and human proteins reported in different resources. Additionally, the KG represents chemicals tested against Monkeypox and their targets, associated biological processes, molecular functions, diseases and side effects.</p>
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<p><strong>KG status</strong></p>
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<p>Version 1 stats:</p>
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<ul>
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<li>Number of Nodes: 8235</li>
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<li>Number of Edges: 40422</li>
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</ul>
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<p>Version 2 stats (2nd September) :</p>
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<ul>
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<li>Number of Nodes: 9129</li>
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<li>Number of Edges: 44568</li>
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</ul>
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<p>Please check the graph.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in &#39;data\export&#39; folder.</p>
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<p>&nbsp;</p></description>
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<description descriptionType="Other">If you use this knowledge graph for your analysis, please cite it using this metadata.</description>
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</descriptions>
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<fundingReferences>
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<fundingReference>
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<funderName>European Commission</funderName>
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<funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100010661</funderIdentifier>
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<awardNumber awardURI="info:eu-repo/grantAgreement/EC/Horizon 2020 Framework Programme - Research and Innovation action/101017536/">101017536</awardNumber>
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<awardTitle>EOSC Future</awardTitle>
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</fundingReference>
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<fundingReference>
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<funderName>European Commission</funderName>
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<funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100018693</funderIdentifier>
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<awardNumber awardURI="info:eu-repo/grantAgreement/EC/Horizon Europe Framework Programme - HORIZON-RIA\HORIZON Action Grant Budget-Based/101046203/">101046203</awardNumber>
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<awardTitle>Beyond COVID</awardTitle>
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</fundingReference>
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</fundingReferences>
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</resource>
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<oaf:identifier identifierType="doi">10.5281/zenodo.7351393</oaf:identifier>
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<dr:CobjCategory type="software">0029</dr:CobjCategory>
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<oaf:accessrights>OPEN</oaf:accessrights>
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<oaf:hostedBy name="ZENODO" id="opendoar____::2659"/>
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<oaf:collectedFrom name="ZENODO" id="opendoar____::2659"/>
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</metadata>
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</record>
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