118 lines
6.8 KiB
XML
118 lines
6.8 KiB
XML
<?xml version='1.0' encoding='utf-8'?>
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<record xmlns:oaf="http://namespace.openaire.eu/oaf"
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xmlns:oai="http://www.openarchives.org/OAI/2.0/"
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xmlns:datacite="http://datacite.org/schema/kernel-3"
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xmlns:dr="http://www.driver-repository.eu/namespace/dr"
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xmlns:dri="http://www.driver-repository.eu/namespace/dri">>
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<header xmlns="http://www.openarchives.org/OAI/2.0/">
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<identifier>oai:zenodo.org:7351221</identifier>
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<datestamp>2020-01-20T16:45:20Z</datestamp>
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<setSpec>openaire</setSpec>
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<dri:objIdentifier>od______2659::040cee965a4544e343a2ba149783c3fc</dri:objIdentifier>
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<dri:dateOfCollection>2022-11-25T01:08:31Z</dri:dateOfCollection>
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</header>
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<metadata>
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<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
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<identifier identifierType="DOI">10.5281/zenodo.7351221</identifier>
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<creators>
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<creator>
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<creatorName>Karki, Reagon</creatorName>
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<givenName>Reagon</givenName>
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<familyName>Karki</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-1815-0037</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</creator>
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</creators>
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<titles>
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<title>COVID-19 Knowledge Graph: A semantic resource embedding biological and chemical entities</title>
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</titles>
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<publisher>Zenodo</publisher>
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<publicationYear>2022</publicationYear>
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<contributors>
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<contributor contributorType="ContactPerson">
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<contributorName>Zaliani, Andrea</contributorName>
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<givenName>Andrea</givenName>
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<familyName>Zaliani</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-1740-8390</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</contributor>
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<contributor contributorType="ContactPerson">
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<contributorName>Gadiya, Yojana</contributorName>
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<givenName>Yojana</givenName>
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<familyName>Gadiya</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7683-0452</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</contributor>
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<contributor contributorType="ProjectLeader">
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<contributorName>Gribbon, Philip</contributorName>
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<givenName>Philip</givenName>
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<familyName>Gribbon</familyName>
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<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-7655-2459</nameIdentifier>
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<affiliation>Fraunhofer Institute of Translation Medicine and Pharmacology</affiliation>
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</contributor>
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</contributors>
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<dates>
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<date dateType="Issued">2022-11-23</date>
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</dates>
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<resourceType resourceTypeGeneral="Software"/>
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<alternateIdentifiers>
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<alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/7351221</alternateIdentifier>
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</alternateIdentifiers>
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<relatedIdentifiers>
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<relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo" resourceTypeGeneral="Software">https://github.com/Fraunhofer-ITMP/BY-COVID-KG</relatedIdentifier>
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<relatedIdentifier relatedIdentifierType="URL" relationType="IsDerivedFrom" resourceTypeGeneral="Software">https://github.com/Fraunhofer-ITMP/BY-COVID-KG/blob/main/BY_COVID_update_August.ipynb</relatedIdentifier>
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<relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.7351220</relatedIdentifier>
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<relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/covid-19</relatedIdentifier>
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</relatedIdentifiers>
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<version>v1.0.0</version>
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<rightsList>
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<rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
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</rightsList>
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<descriptions>
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<description descriptionType="Abstract"><p>A Knowledge graph representation of compounds and associated biological entities in the BY-COVID and EOSC Future project.</p>
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<p><strong>Current status</strong></p>
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<ul>
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<li>Number of Nodes: 35952</li>
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<li>Number of Edges: 279462</li>
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<li>Human Proteins: 1347</li>
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<li>Assay: 15835</li>
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<li>Chemical/Compound: 4096</li>
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<li>Mechanism of Action: 739</li>
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<li>Pathway: 1513</li>
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<li>Disease: 1585</li>
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<li>SideEffect: 7420</li>
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<li>Biological Process: 2085</li>
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<li>Molecular Function: 1332</li>
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</ul>
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<p>Please check the BY_COVID_update_August.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in &#39;data\export&#39; folder.</p>
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<p>&nbsp;</p></description>
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</descriptions>
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<fundingReferences>
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<fundingReference>
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<funderName>European Commission</funderName>
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<funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100010661</funderIdentifier>
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<awardNumber awardURI="info:eu-repo/grantAgreement/EC/Horizon 2020 Framework Programme - Research and Innovation action/101017536/">101017536</awardNumber>
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<awardTitle>EOSC Future</awardTitle>
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</fundingReference>
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<fundingReference>
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<funderName>European Commission</funderName>
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<funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100018693</funderIdentifier>
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<awardNumber awardURI="info:eu-repo/grantAgreement/EC/Horizon Europe Framework Programme - HORIZON-RIA\HORIZON Action Grant Budget-Based/101046203/">101046203</awardNumber>
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<awardTitle>Beyond COVID</awardTitle>
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</fundingReference>
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</fundingReferences>
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</resource>
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<oaf:identifier identifierType="doi">10.5281/zenodo.7351221</oaf:identifier>
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<dr:CobjCategory type="software">0029</dr:CobjCategory>
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<oaf:accessrights>OPEN</oaf:accessrights>
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<oaf:hostedBy name="ZENODO" id="opendoar____::2659"/>
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<oaf:collectedFrom name="ZENODO" id="opendoar____::2659"/>
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</metadata>
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</record> |