237 lines
9.7 KiB
XML
237 lines
9.7 KiB
XML
<workflow-app name="hosted_by_map" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>sourcePath</name>
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<description>the source path</description>
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</property>
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<property>
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<name>outputPath</name>
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<description>the output path</description>
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</property>
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<property>
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<name>hostedByMapPath</name>
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<description>the output path</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="resume_from"/>
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<decision name="resume_from">
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<switch>
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<case to="remove_hbmpath">${wf:conf('resumeFrom') eq 'ProduceHBM'}</case>
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<default to="prepareInfo"/>
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</switch>
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</decision>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="remove_hbmpath">
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<fs>
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<delete path="${hostedByMapPath}"/>
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<!-- <mkdir path="${hostedByMapPath}"/>-->
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</fs>
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<ok to="fork_downloads_csv"/>
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<error to="Kill"/>
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</action>
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<fork name="fork_downloads_csv">
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<path start="download_gold"/>
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<path start="download_doaj"/>
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</fork>
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<action name="download_gold">
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<java>
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<main-class>eu.dnetlib.dhp.oa.graph.hostedbymap.DownloadCSV</main-class>
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<arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
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<arg>--fileURL</arg><arg>${unibiFileURL}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/unibi_gold</arg>
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<arg>--outputFile</arg><arg>${workingDir}/unibi_gold.json</arg>
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<arg>--classForName</arg><arg>eu.dnetlib.dhp.oa.graph.hostedbymap.model.UnibiGoldModel</arg>
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</java>
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<ok to="join_download"/>
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<error to="Kill"/>
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</action>
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<action name="download_doaj">
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<java>
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<main-class>eu.dnetlib.dhp.oa.graph.hostedbymap.DownloadCSV</main-class>
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<arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
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<arg>--fileURL</arg><arg>${doajFileURL}</arg>
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<arg>--workingPath</arg><arg>${workingDir}/doaj</arg>
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<arg>--outputFile</arg><arg>${workingDir}/doaj.json</arg>
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<arg>--classForName</arg><arg>eu.dnetlib.dhp.oa.graph.hostedbymap.model.DOAJModel</arg>
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</java>
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<ok to="join_download"/>
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<error to="Kill"/>
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</action>
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<join name="join_download" to="produceHBM"/>
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<action name="produceHBM">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<name>Produce the new HostedByMap</name>
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<class>eu.dnetlib.dhp.oa.graph.hostedbymap.SparkProduceHostedByMap</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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</spark-opts>
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<arg>--datasourcePath</arg><arg>${sourcePath}/datasource</arg>
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<arg>--workingPath</arg><arg>${workingDir}</arg>
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<arg>--outputPath</arg><arg>${hostedByMapPath}</arg>
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<arg>--master</arg><arg>yarn-cluster</arg>
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</spark>
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<ok to="prepareInfo"/>
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<error to="Kill"/>
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</action>
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<action name="prepareInfo">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<name>Prepare info to apply the hbm</name>
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<class>eu.dnetlib.dhp.oa.graph.hostedbymap.SparkPrepareHostedByInfoToApply</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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</spark-opts>
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<arg>--hostedByMapPath</arg><arg>${hostedByMapPath}</arg>
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<arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
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<arg>--graphPath</arg><arg>${sourcePath}</arg>
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<arg>--master</arg><arg>yarn-cluster</arg>
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</spark>
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<ok to="fork_apply"/>
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<error to="Kill"/>
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</action>
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<fork name="fork_apply">
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<path start="apply_result"/>
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<path start="apply_datasource"/>
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</fork>
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<action name="apply_result">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<name>Apply hbm to result</name>
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<class>eu.dnetlib.dhp.oa.graph.hostedbymap.SparkApplyHostedByMapToResult</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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</spark-opts>
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<arg>--outputPath</arg><arg>${outputPath}/publication</arg>
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<arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
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<arg>--graphPath</arg><arg>${sourcePath}</arg>
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<arg>--master</arg><arg>yarn-cluster</arg>
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</spark>
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<ok to="join_apply"/>
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<error to="Kill"/>
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</action>
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<action name="apply_datasource">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn-cluster</master>
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<name>Apply hbm to datasource</name>
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<class>eu.dnetlib.dhp.oa.graph.hostedbymap.SparkApplyHostedByMapToDatasource</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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</spark-opts>
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<arg>--outputPath</arg><arg>${outputPath}/datasource</arg>
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<arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
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<arg>--graphPath</arg><arg>${sourcePath}</arg>
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<arg>--master</arg><arg>yarn-cluster</arg>
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</spark>
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<ok to="join_apply"/>
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<error to="Kill"/>
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</action>
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<join name="join_apply" to="End"/>
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<end name="End"/>
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</workflow-app> |