58 lines
2.3 KiB
XML
58 lines
2.3 KiB
XML
<workflow-app name="Download_Transform_Pubmed_Workflow" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>baselineWorkingPath</name>
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<description>the Baseline Working Path</description>
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</property>
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<property>
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<name>isLookupUrl</name>
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<description>The IS lookUp service endopoint</description>
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</property>
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<property>
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<name>targetPath</name>
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<description>The target path</description>
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</property>
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<property>
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<name>skipUpdate</name>
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<value>false</value>
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<description>The request block size</description>
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</property>
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</parameters>
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<start to="ConvertDataset"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="ConvertDataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Convert Baseline to OAF Dataset</name>
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<class>eu.dnetllib.dhp.sx.bio.ebi.SparkCreateBaselineDataFrame</class>
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<jar>dhp-aggregation-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.shuffle.partitions=2000
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--workingPath</arg><arg>${baselineWorkingPath}</arg>
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<arg>--targetPath</arg><arg>${targetPath}</arg>
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<arg>--master</arg><arg>yarn</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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<arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
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<arg>--skipUpdate</arg><arg>${skipUpdate}</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |