package eu.dnetlib.dhp.oa.graph.dump.complete; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation; public class ExtractRelationFromEntityTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory .getLogger(ExtractRelationFromEntityTest.class); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(ExtractRelationFromEntityTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(ExtractRelationFromEntityTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(ExtractRelationFromEntityTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void test1() { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/singelRecord_pub.json") .getPath(); final String communityMapPath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json") .getPath(); Extractor ex = new Extractor(); ex .run( false, sourcePath, workingDir.toString() + "/relation", // eu.dnetlib.dhp.schema.oaf.Publication.class, communityMapPath); eu.dnetlib.dhp.schema.oaf.Publication.class, communityMapPath); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/relation") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(Relation.class)); Assertions .assertEquals( 9, verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daeab3685c3'").count()); Assertions .assertEquals( 9, verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daxab3685c3'").count()); } }