package eu.dnetlib.dhp.actionmanager.fosnodoi; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.IOException; import java.io.Serializable; import java.util.*; import org.apache.commons.cli.ParseException; import org.apache.commons.io.IOUtils; import org.apache.hadoop.io.Text; import org.apache.hadoop.io.compress.GzipCodec; import org.apache.hadoop.mapred.SequenceFileOutputFormat; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaPairRDD; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.FlatMapFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.actionmanager.opencitations.model.COCI; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.action.AtomicAction; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Relation; import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.utils.*; import scala.Tuple2; public class CreateActionSetSparkJob implements Serializable { private static final Logger log = LoggerFactory.getLogger(CreateActionSetSparkJob.class); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); public static void main(final String[] args) throws IOException, ParseException { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( Objects .requireNonNull( CreateActionSetSparkJob.class .getResourceAsStream( "/eu/dnetlib/dhp/actionmanager/fosnodoi/as_parameters.json")))); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> createActionSet(spark, inputPath, outputPath)); } private static void createActionSet(SparkSession spark, String inputPath, String outputPath) { spark .read() .textFile(inputPath) .map( (MapFunction) value -> OBJECT_MAPPER.readValue(value, Result.class), Encoders.bean(Result.class)) .toJavaRDD() .map(p -> new AtomicAction(p.getClass(), p)) .mapToPair( aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()), new Text(OBJECT_MAPPER.writeValueAsString(aa)))) .saveAsHadoopFile( outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, GzipCodec.class); } }