package eu.dnetlib.dhp.oa.provision; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.ArrayList; import java.util.List; import java.util.Optional; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapGroupsFunction; import org.apache.spark.sql.*; import org.apache.spark.sql.expressions.Aggregator; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.common.HdfsSupport; import eu.dnetlib.dhp.oa.provision.model.*; import scala.Tuple2; import scala.collection.JavaConverters; import scala.collection.Seq; /** * AdjacencyListBuilderJob: given the tuple (S - R - T) we need to group by S.id -> List [ R - T ], mapping the * result as JoinedEntity */ public class AdjacencyListBuilderJob { private static final Logger log = LoggerFactory.getLogger(AdjacencyListBuilderJob.class); public static final int MAX_LINKS = 100; public static void main(String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( AdjacencyListBuilderJob.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/provision/input_params_build_adjacency_lists.json"))); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String inputPath = parser.get("inputPath"); log.info("inputPath: {}", inputPath); String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer"); conf.registerKryoClasses(ProvisionModelSupport.getModelClasses()); runWithSparkSession( conf, isSparkSessionManaged, spark -> { removeOutputDir(spark, outputPath); createAdjacencyListsKryo(spark, inputPath, outputPath); }); } private static void createAdjacencyListsKryo( SparkSession spark, String inputPath, String outputPath) { log.info("Reading joined entities from: {}", inputPath); final List paths = HdfsSupport .listFiles(inputPath, spark.sparkContext().hadoopConfiguration()); log.info("Found paths: {}", String.join(",", paths)); } private static Seq toSeq(List list) { return JavaConverters.asScalaIteratorConverter(list.iterator()).asScala().toSeq(); } private static void removeOutputDir(SparkSession spark, String path) { HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration()); } }