package eu.dnetlib.dhp.resulttoorganizationfromsemrel; import static eu.dnetlib.dhp.PropagationConstant.isSparkSessionManaged; import static eu.dnetlib.dhp.PropagationConstant.readPath; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.ForeachFunction; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.KeyValueSet; import eu.dnetlib.dhp.PropagationConstant; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Relation; public class SparkJobTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory.getLogger(SparkJobTest.class); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files.createTempDirectory(StepActionsTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(PrepareInfoJobTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(PrepareInfoJobTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void completeExecution() throws Exception { final String graphPath = getClass() .getResource("/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep") .getPath(); final String leavesPath = getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/") .getPath(); final String childParentPath = getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/") .getPath(); final String resultOrgPath = getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/") .getPath(); readPath(spark, leavesPath, Leaves.class) .write() .option("compression", "gzip") .json(workingDir.toString() + "/leavesInput"); readPath(spark, resultOrgPath, KeyValueSet.class) .write() .option("compression", "gzip") .json(workingDir.toString() + "/orgsInput"); SparkResultToOrganizationFromSemRel .main( new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-relationPath", graphPath, "-hive_metastore_uris", "", "-outputPath", workingDir.toString() + "/finalrelation", "-leavesPath", workingDir.toString() + "/leavesInput", "-resultOrgPath", workingDir.toString() + "/orgsInput", "-childParentPath", childParentPath, "-workingDir", workingDir.toString() }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/finalrelation") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); tmp.foreach(r -> System.out.println(OBJECT_MAPPER.writeValueAsString(r))); Assertions.assertEquals(18, tmp.count()); tmp.foreach(r -> Assertions.assertEquals(ModelConstants.AFFILIATION, r.getSubRelType())); tmp.foreach(r -> Assertions.assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType())); tmp .foreach( r -> Assertions .assertEquals( PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance())); tmp .foreach( r -> Assertions .assertEquals( PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID, r.getDataInfo().getProvenanceaction().getClassid())); tmp .foreach( r -> Assertions .assertEquals( PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME, r.getDataInfo().getProvenanceaction().getClassname())); tmp .foreach( r -> Assertions .assertEquals( "0.85", r.getDataInfo().getTrust())); Assertions.assertEquals(9, tmp.filter(r -> r.getSource().substring(0, 3).equals("50|")).count()); tmp .filter(r -> r.getSource().substring(0, 3).equals("50|")) .foreach(r -> Assertions.assertEquals(ModelConstants.HAS_AUTHOR_INSTITUTION, r.getRelClass())); Assertions .assertEquals( 2, tmp.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count()); Assertions .assertEquals( 3, tmp.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count()); Assertions .assertEquals( 2, tmp.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count()); Assertions .assertEquals( 1, tmp.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")).count()); Assertions .assertEquals( 1, tmp.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")).count()); Assertions.assertEquals(9, tmp.filter(r -> r.getSource().substring(0, 3).equals("20|")).count()); tmp .filter(r -> r.getSource().substring(0, 3).equals("20|")) .foreach(r -> Assertions.assertEquals(ModelConstants.IS_AUTHOR_INSTITUTION_OF, r.getRelClass())); Assertions .assertEquals( 1, tmp.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count()); Assertions .assertEquals( 1, tmp.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count()); Assertions .assertEquals( 2, tmp.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count()); Assertions .assertEquals( 2, tmp.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count()); Assertions .assertEquals( 3, tmp.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count()); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .map(r -> r.getTarget()) .collect() .contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .map(r -> r.getTarget()) .collect() .contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .map(r -> r.getTarget()) .collect() .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .map(r -> r.getTarget()) .collect() .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .map(r -> r.getTarget()) .collect() .contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .map(r -> r.getTarget()) .collect() .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .map(r -> r.getTarget()) .collect() .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")) .map(r -> r.getTarget()) .collect() .contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")) .map(r -> r.getTarget()) .collect() .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")) .map(r -> r.getTarget()) .collect() .contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")) .map(r -> r.getTarget()) .collect() .contains("50|openaire____::ec653e804967133b9436fdd30d3ff51d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .map(r -> r.getTarget()) .collect() .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .map(r -> r.getTarget()) .collect() .contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")) .map(r -> r.getTarget()) .collect() .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")) .map(r -> r.getTarget()) .collect() .contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")) .map(r -> r.getTarget()) .collect() .contains("50|doajarticles::03748bcb5d754c951efec9700e18a56d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .map(r -> r.getTarget()) .collect() .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .map(r -> r.getTarget()) .collect() .contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")); } }