package eu.dnetlib.dhp.collection.plugin.base; import java.io.IOException; import java.io.StringWriter; import java.util.Iterator; import java.util.Optional; import java.util.Spliterator; import java.util.Spliterators; import java.util.stream.Stream; import java.util.stream.StreamSupport; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; import org.dom4j.Document; import org.dom4j.io.OutputFormat; import org.dom4j.io.XMLWriter; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.collection.ApiDescriptor; import eu.dnetlib.dhp.collection.plugin.CollectorPlugin; import eu.dnetlib.dhp.collection.plugin.file.AbstractSplittedRecordPlugin; import eu.dnetlib.dhp.common.aggregation.AggregatorReport; import eu.dnetlib.dhp.common.collection.CollectorException; public class BaseCollectorPlugin implements CollectorPlugin { private final FileSystem fs; private static final Logger log = LoggerFactory.getLogger(AbstractSplittedRecordPlugin.class); // MAPPING AND FILTERING ARE DEFINED HERE: // https://docs.google.com/document/d/1Aj-ZAV11b44MCrAAUCPiS2TUlXb6PnJEu1utCMAcCOU/edit public BaseCollectorPlugin(final FileSystem fs) { this.fs = fs; } @Override public Stream collect(final ApiDescriptor api, final AggregatorReport report) throws CollectorException { // get path to file final Path filePath = Optional .ofNullable(api.getBaseUrl()) .map(Path::new) .orElseThrow(() -> new CollectorException("missing baseUrl")); log.info("baseUrl: {}", filePath); try { if (!this.fs.exists(filePath)) { throw new CollectorException("path does not exist: " + filePath); } } catch (final Throwable e) { throw new CollectorException(e); } final Iterator iterator = new BaseCollectorIterator(this.fs, filePath, report); final Spliterator spliterator = Spliterators.spliteratorUnknownSize(iterator, Spliterator.ORDERED); return StreamSupport .stream(spliterator, false) .filter(doc -> filterXml(doc, report)) .map(doc -> xmlToString(doc, report)); } private boolean filterXml(final Document doc, final AggregatorReport report) { // TODO Auto-generated method stub // HERE THE FILTERS ACCORDING TO THE DOCUMENTATION return true; } private String xmlToString(final Document doc, final AggregatorReport report) { try (final StringWriter sw = new StringWriter()) { final XMLWriter writer = new XMLWriter(sw, OutputFormat.createPrettyPrint()); writer.write(doc); return writer.toString(); } catch (final IOException e) { report.put(e.getClass().getName(), e.getMessage()); throw new RuntimeException("Error indenting XML record", e); } } }