package eu.dnetlib.dhp.oa.graph.dump.funderresults; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.List; import java.util.Objects; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult; import eu.dnetlib.dhp.schema.dump.oaf.community.Project; /** * Splits the dumped results by funder and stores them in a folder named as the funder nsp (for all the funders, but the EC * for the EC it specifies also the fundingStream (FP7 or H2020) */ public class SparkDumpFunderResults implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkDumpFunderResults.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkDumpFunderResults.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String graphPath = parser.get("graphPath"); log.info("relationPath: {}", graphPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); writeResultProjectList(spark, inputPath, outputPath, graphPath); }); } private static void writeResultProjectList(SparkSession spark, String inputPath, String outputPath, String graphPath) { Dataset project = Utils .readPath(spark, graphPath + "/project", eu.dnetlib.dhp.schema.oaf.Project.class); Dataset result = Utils .readPath(spark, inputPath + "/publication", CommunityResult.class) .union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class)) .union(Utils.readPath(spark, inputPath + "/orp", CommunityResult.class)) .union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class)); List funderList = project .select("id") .map((MapFunction) value -> value.getString(0).substring(0, 15), Encoders.STRING()) .distinct() .collectAsList(); funderList.forEach(funder -> { String fundernsp = funder.substring(3); String funderdump; if (fundernsp.startsWith("corda")) { funderdump = "EC_"; if (fundernsp.endsWith("h2020")) { funderdump += "H2020"; } else { funderdump += "FP7"; } } else { funderdump = fundernsp.substring(0, fundernsp.indexOf("_")).toUpperCase(); } writeFunderResult(funder, result, outputPath, funderdump); }); } private static void dumpResults(String nsp, Dataset results, String outputPath, String funderName) { results.map((MapFunction) r -> { if (!Optional.ofNullable(r.getProjects()).isPresent()) { return null; } for (Project p : r.getProjects()) { if (p.getId().startsWith(nsp)) { if (nsp.startsWith("40|irb")) { if (p.getFunder().getShortName().equals(funderName)) return r; else return null; } return r; } } return null; }, Encoders.bean(CommunityResult.class)) .filter(Objects::nonNull) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath + "/" + funderName); } private static void writeFunderResult(String funder, Dataset results, String outputPath, String funderDump) { if (funder.startsWith("40|irb")) { dumpResults(funder, results, outputPath, "HRZZ"); dumpResults(funder, results, outputPath, "MZOS"); } else dumpResults(funder, results, outputPath, funderDump); } }