package eu.dnetlib.dhp.oa.provision; import static org.junit.jupiter.api.Assertions.*; import java.io.IOException; import java.io.StringReader; import java.net.URI; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.solr.client.solrj.SolrQuery; import org.apache.solr.client.solrj.response.QueryResponse; import org.apache.solr.common.SolrInputField; import org.apache.solr.common.params.CommonParams; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.dom4j.io.SAXReader; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.Test; import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.Mock; import org.mockito.Mockito; import org.mockito.junit.jupiter.MockitoExtension; import eu.dnetlib.dhp.oa.provision.model.SerializableSolrInputDocument; import eu.dnetlib.dhp.oa.provision.model.TupleWrapper; import eu.dnetlib.dhp.oa.provision.utils.ISLookupClient; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; @ExtendWith(MockitoExtension.class) public class XmlIndexingJobTest extends SolrTest { protected static SparkSession spark; private static final Integer batchSize = 100; @Mock private ISLookUpService isLookUpService; @Mock private ISLookupClient isLookupClient; @BeforeEach public void prepareMocks() throws ISLookUpException, IOException { isLookupClient.setIsLookup(isLookUpService); int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort(); Mockito .when(isLookupClient.getDsId(Mockito.anyString())) .thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl"); Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort)); Mockito .when(isLookupClient.getLayoutSource(Mockito.anyString())) .thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml"))); Mockito .when(isLookupClient.getLayoutTransformer()) .thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl"))); } @BeforeAll public static void before() { SparkConf conf = new SparkConf(); conf.setAppName(XmlIndexingJobTest.class.getSimpleName()); conf.registerKryoClasses(new Class[] { SerializableSolrInputDocument.class }); conf.setMaster("local[1]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString()); spark = SparkSession .builder() .appName(XmlIndexingJobTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void tearDown() { spark.stop(); } @Test void testXmlIndexingJob_onSolr() throws Exception { String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml"; Dataset records = spark .read() .schema(Encoders.bean(TupleWrapper.class).schema()) .json(inputPath) .as(Encoders.bean(TupleWrapper.class)); long nRecord = records.count(); new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, true, null) .run(isLookupClient); assertEquals(0, miniCluster.getSolrClient().commit().getStatus()); QueryResponse rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "*:*")); assertEquals( nRecord, rsp.getResults().getNumFound(), "the number of indexed records should be equal to the number of input records"); rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "isgreen:true")); assertEquals( 0, rsp.getResults().getNumFound(), "the number of indexed records having isgreen = true"); rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "openaccesscolor:bronze")); assertEquals( 0, rsp.getResults().getNumFound(), "the number of indexed records having openaccesscolor = bronze"); rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "isindiamondjournal:true")); assertEquals( 0, rsp.getResults().getNumFound(), "the number of indexed records having isindiamondjournal = true"); rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "publiclyfunded:true")); assertEquals( 0, rsp.getResults().getNumFound(), "the number of indexed records having publiclyfunded = true"); rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "peerreviewed:true")); assertEquals( 0, rsp.getResults().getNumFound(), "the number of indexed records having peerreviewed = true"); rsp = miniCluster .getSolrClient() .query( new SolrQuery() .add(CommonParams.Q, "objidentifier:\"iddesignpres::ae77e56e84ad058d9e7f19fa2f7325db\"") .add(CommonParams.FL, "__json")); assertEquals( 1, rsp.getResults().getNumFound(), "the number of indexed records having the given identifier"); Optional json = rsp .getResults() .stream() .map(d -> d.getFieldValues("__json")) .flatMap(d -> d.stream()) .findFirst(); assertTrue(json.isPresent()); log.info((String) json.get()); } @Test void testXmlIndexingJob_saveOnHDFS() throws Exception { final String ID_XPATH = "//*[local-name()='header']/*[local-name()='objIdentifier']"; String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml"; // String inputPath = "/Users/claudio/workspace/data/index"; Dataset records = spark .read() .schema(Encoders.bean(TupleWrapper.class).schema()) .json(inputPath) .as(Encoders.bean(TupleWrapper.class)); records.printSchema(); long nRecord = records.count(); log.info("found {} records", nRecord); final Dataset ids = records .map((MapFunction) TupleWrapper::getXml, Encoders.STRING()) .map( (MapFunction) s -> new SAXReader().read(new StringReader(s)).valueOf(ID_XPATH), Encoders.STRING()); log.info("found {} ids", ids.count()); long xmlIdUnique = ids .distinct() .count(); log.info("found {} unique ids", xmlIdUnique); assertEquals(nRecord, xmlIdUnique, "IDs should be unique among input records"); final String outputPath = workingDir.resolve("outputPath").toAbsolutePath().toString(); new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.HDFS, false, outputPath) .run(isLookupClient); final Dataset solrDocs = spark .read() .load(outputPath) .as(Encoders.kryo(SerializableSolrInputDocument.class)); solrDocs.foreach(doc -> { assertNotNull(doc.get("__result")); assertNotNull(doc.get("__json")); }); long docIdUnique = solrDocs.map((MapFunction) doc -> { final SolrInputField id = doc.getField("__indexrecordidentifier"); return id.getFirstValue().toString(); }, Encoders.STRING()) .distinct() .count(); assertEquals(xmlIdUnique, docIdUnique, "IDs should be unique among the output XML records"); long jsonUnique = solrDocs .map( (MapFunction) je -> (String) je.getField("__json").getValue(), Encoders.STRING()) .distinct() .count(); assertEquals(jsonUnique, docIdUnique, "IDs should be unique among the output JSON records"); } }