package eu.dnetlib.dhp.oa.provision; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.StringReader; import java.io.StringWriter; import java.text.SimpleDateFormat; import java.util.Date; import java.util.Optional; import javax.xml.transform.Transformer; import javax.xml.transform.TransformerException; import javax.xml.transform.stream.StreamResult; import javax.xml.transform.stream.StreamSource; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import org.apache.hadoop.io.Text; import org.apache.solr.common.SolrInputDocument; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.lucidworks.spark.util.SolrSupport; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.provision.model.SerializableSolrInputDocument; import eu.dnetlib.dhp.oa.provision.model.TupleWrapper; import eu.dnetlib.dhp.oa.provision.utils.ISLookupClient; import eu.dnetlib.dhp.oa.provision.utils.StreamingInputDocumentFactory; import eu.dnetlib.dhp.utils.ISLookupClientFactory; import eu.dnetlib.dhp.utils.saxon.SaxonTransformerFactory; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; import scala.Tuple2; public class XmlIndexingJob { private static final Logger log = LoggerFactory.getLogger(XmlIndexingJob.class); public enum OutputFormat { SOLR, HDFS } private static final Integer DEFAULT_BATCH_SIZE = 1000; protected static final String DATE_FORMAT = "yyyy-MM-dd'T'hh:mm:ss'Z'"; private final String inputPath; private final String format; private final int batchSize; private final OutputFormat outputFormat; private final String outputPath; private boolean shouldIndex; private final SparkSession spark; public static void main(String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( XmlIndexingJob.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/provision/input_params_update_index.json"))); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("inputPath"); log.info("inputPath: {}", inputPath); final String format = parser.get("format"); log.info("format: {}", format); final String outputPath = Optional .ofNullable(parser.get("outputPath")) .map(StringUtils::trim) .orElse(null); log.info("outputPath: {}", outputPath); final Integer batchSize = Optional .ofNullable(parser.get("batchSize")) .map(Integer::valueOf) .orElse(DEFAULT_BATCH_SIZE); log.info("batchSize: {}", batchSize); final OutputFormat outputFormat = Optional .ofNullable(parser.get("outputFormat")) .map(OutputFormat::valueOf) .orElse(OutputFormat.SOLR); log.info("outputFormat: {}", outputFormat); final boolean shouldIndex = Optional .ofNullable(parser.get("shouldIndex")) .map(Boolean::valueOf) .orElse(false); log.info("shouldIndex: {}", shouldIndex); final SparkConf conf = new SparkConf(); conf.registerKryoClasses(new Class[] { SerializableSolrInputDocument.class }); runWithSparkSession( conf, isSparkSessionManaged, spark -> { final String isLookupUrl = parser.get("isLookupUrl"); log.info("isLookupUrl: {}", isLookupUrl); final ISLookupClient isLookup = new ISLookupClient(ISLookupClientFactory.getLookUpService(isLookupUrl)); new XmlIndexingJob(spark, inputPath, format, batchSize, outputFormat, shouldIndex, outputPath) .run(isLookup); }); } public XmlIndexingJob(SparkSession spark, String inputPath, String format, Integer batchSize, OutputFormat outputFormat, boolean shouldIndex, String outputPath) { this.spark = spark; this.inputPath = inputPath; this.format = format; this.batchSize = batchSize; this.outputFormat = outputFormat; this.shouldIndex = shouldIndex; this.outputPath = outputPath; } public void run(ISLookupClient isLookup) throws ISLookUpException, TransformerException { final String fields = isLookup.getLayoutSource(format); log.info("fields: {}", fields); final String xslt = isLookup.getLayoutTransformer(); final String dsId = isLookup.getDsId(format); log.info("dsId: {}", dsId); final String zkHost = isLookup.getZkHost(); log.info("zkHost: {}", zkHost); final String indexRecordXslt = getLayoutTransformer(format, fields, xslt); log.info("indexRecordTransformer {}", indexRecordXslt); final Encoder encoder = Encoders.bean(TupleWrapper.class); final Dataset records = spark .read() .schema(encoder.schema()) .json(inputPath) .as(encoder) .map( (MapFunction) t -> new TupleWrapper( toIndexRecord(SaxonTransformerFactory.newInstance(indexRecordXslt), t.getXml()), t.getJson()), Encoders.bean(TupleWrapper.class)); switch (outputFormat) { case SOLR: if (shouldIndex) { final String collection = ProvisionConstants.getCollectionName(format); // SparkSolr >= 4 // com.lucidworks.spark.BatchSizeType bt = com.lucidworks.spark.BatchSizeType.NUM_DOCS; // SolrSupport.indexDocs(zkHost, collection, batchSize, bt, docs.rdd()); // SparkSolr < 4 JavaRDD docs = records .javaRDD() .map( t -> new StreamingInputDocumentFactory().parseDocument(t.getXml(), t.getJson())); SolrSupport.indexDocs(zkHost, collection, batchSize, docs.rdd()); } break; case HDFS: records .map( (MapFunction) t -> { SolrInputDocument s = new StreamingInputDocumentFactory() .parseDocument(t.getXml(), t.getJson()); return new SerializableSolrInputDocument(s); }, Encoders.kryo(SerializableSolrInputDocument.class)) .write() .mode(SaveMode.Overwrite) .parquet(outputPath); break; default: throw new IllegalArgumentException("invalid outputFormat: " + outputFormat); } } protected static String toIndexRecord(Transformer tr, final String xmlRecord) { final StreamResult res = new StreamResult(new StringWriter()); try { tr.transform(new StreamSource(new StringReader(xmlRecord)), res); return res.getWriter().toString(); } catch (TransformerException e) { throw new IllegalArgumentException("XPathException on record: \n" + xmlRecord, e); } } /** * Creates the XSLT responsible for building the index xml records. * * @param format Metadata format name (DMF|TMF) * @param xslt xslt for building the index record transformer * @param fields the list of fields * @return the javax.xml.transform.Transformer * @throws TransformerException could happen */ protected static String getLayoutTransformer(String format, String fields, String xslt) throws TransformerException { final Transformer layoutTransformer = SaxonTransformerFactory.newInstance(xslt); final StreamResult layoutToXsltXslt = new StreamResult(new StringWriter()); layoutTransformer.setParameter("format", format); layoutTransformer.transform(new StreamSource(new StringReader(fields)), layoutToXsltXslt); return layoutToXsltXslt.getWriter().toString(); } /** * method return a solr-compatible string representation of a date, used to mark all records as indexed today * * @return the parsed date */ public static String getRecordDatestamp() { return new SimpleDateFormat(DATE_FORMAT).format(new Date()); } }