package eu.dnetlib.dhp.oa.graph.dump.pid; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.io.StringReader; import java.util.ArrayList; import java.util.List; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FlatMapFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.dom4j.Document; import org.dom4j.DocumentException; import org.dom4j.io.SAXReader; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.google.gson.Gson; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.schema.dump.pidgraph.Entity; import eu.dnetlib.dhp.schema.oaf.Organization; import eu.dnetlib.dhp.schema.oaf.Project; public class SparkDumpProject implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkDumpOrganization.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkDumpOrganization.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump_pid/input_dump_project.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); dumpProjects(spark, inputPath, outputPath); }); } private static void dumpProjects(SparkSession spark, String inputPath, String outputPath) { Dataset projectDataset = Utils.readPath(spark, inputPath, Project.class); projectDataset.flatMap((FlatMapFunction) project -> { List projs = new ArrayList<>(); project.getFundingtree().forEach(fund -> { try { projs.add(Utils.getEntity(fund.getValue(), project.getCode().getValue())); } catch (DocumentException e) { e.printStackTrace(); } }); return projs.iterator(); }, Encoders.bean(Entity.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath + "/project"); } }