package eu.dnetlib.dhp.actionmanager.createunresolvedentities; import static eu.dnetlib.dhp.actionmanager.Constants.DEFAULT_DELIMITER; import static eu.dnetlib.dhp.actionmanager.Constants.isSparkSessionManaged; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.FOSDataModel; import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.SDGDataModel; import eu.dnetlib.dhp.application.ArgumentApplicationParser; public class GetSDGSparkJob implements Serializable { private static final Logger log = LoggerFactory.getLogger(GetSDGSparkJob.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( GetSDGSparkJob.class .getResourceAsStream( "/eu/dnetlib/dhp/actionmanager/createunresolvedentities/get_input_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); // the path where the original fos csv file is stored final String sourcePath = parser.get("sourcePath"); log.info("sourcePath {}", sourcePath); // the path where to put the file as json final String outputPath = parser.get("outputPath"); log.info("outputPath {}", outputPath); final String delimiter = Optional .ofNullable(parser.get("delimiter")) .orElse(DEFAULT_DELIMITER); SparkConf sconf = new SparkConf(); runWithSparkSession( sconf, isSparkSessionManaged, spark -> { getSDG( spark, sourcePath, outputPath, delimiter); }); } private static void getSDG(SparkSession spark, String sourcePath, String outputPath, String delimiter) { Dataset sdgData = spark .read() .format("csv") .option("sep", delimiter) .option("quotes", "\"") .load(sourcePath); sdgData.map((MapFunction) r -> { SDGDataModel sdgDataModel = new SDGDataModel(); sdgDataModel.setDoi(r.getString(0).toLowerCase()); sdgDataModel.setSbj(r.getString(1)); return sdgDataModel; }, Encoders.bean(SDGDataModel.class)) .filter((FilterFunction) sdg -> sdg.getSbj() != null) .write() .mode(SaveMode.Overwrite) .json(outputPath); } }