package eu.dnetlib.dhp.oa.graph.dump.funderresult; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.oa.graph.dump.DumpJobTest; import eu.dnetlib.dhp.oa.graph.dump.SplitForCommunityTest; import eu.dnetlib.dhp.oa.graph.dump.community.CommunitySplit; import eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkDumpFunderResults; import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult; public class SplitPerFunderTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory.getLogger(SplitPerFunderTest.class); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files.createTempDirectory(SplitPerFunderTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(SplitPerFunderTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(SplitPerFunderTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void test1() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump") .getPath(); SparkDumpFunderResults.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/split", "-sourcePath", sourcePath, "-relationPath", sourcePath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); // FP7 3 JavaRDD tmp = sc .textFile(workingDir.toString() + "/split/EC_FP7") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class)); Assertions.assertEquals(3, verificationDataset.count()); Assertions .assertEquals( 1, verificationDataset.filter("id = '50|dedup_wf_001::0d16b1714ab3077df73893a8ea57d776'").count()); // CIHR 2 tmp = sc .textFile(workingDir.toString() + "/split/CIHR") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(2, tmp.count()); // NWO 1 tmp = sc .textFile(workingDir.toString() + "/split/NWO") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(1, tmp.count()); // NIH 3 tmp = sc .textFile(workingDir.toString() + "/split/NIH") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(2, tmp.count()); // NSF 1 tmp = sc .textFile(workingDir.toString() + "/split/NSF") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(1, tmp.count()); // SNSF 1 tmp = sc .textFile(workingDir.toString() + "/split/SNSF") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(1, tmp.count()); // NHMRC 1 tmp = sc .textFile(workingDir.toString() + "/split/NHMRC") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(1, tmp.count()); // H2020 3 tmp = sc .textFile(workingDir.toString() + "/split/EC_H2020") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); Assertions.assertEquals(3, tmp.count()); } }